Dbfetch
ID JQ948069; SV 1; circular; genomic DNA; STD; VRL; 2807 BP. XX AC JQ948069; XX DT 26-AUG-2012 (Rel. 113, Created) DT 14-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Paspalum striate mosaic virus isolate AU-3011-2011, complete genome. XX KW . XX OS Paspalum striate mosaic virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2807 RX DOI; 10.1016/j.virusres.2012.07.018. RX PUBMED; 22841490. RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D., RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A., RA Martin D.P., Varsani A.; RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa"; RL Virus Res. 169(1):127-136(2012). XX RN [2] RP 1-2807 RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J., RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.; RT ; RL Submitted (17-APR-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; a4bb43b369632c40088a8133afa5afcf. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.9 CC Coverage :: 100 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2807 FT /organism="Paspalum striate mosaic virus" FT /host="Paspalum dilatatum" FT /isolate="AU-3011-2011" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="28.32 S 153.49 E" FT /collection_date="2011" FT /note="genotype: PSMV-B1" FT /db_xref="taxon:1072672" FT CDS 1..333 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:J7FGW3" FT /db_xref="UniProtKB/TrEMBL:J7FGW3" FT /protein_id="AFN80599.1" FT /translation="MAEYPQSAFVVTGAIPQRSQDVSFASSLKVTALSLFAAFIAACVL FT SFIYKTCIADFITQFRISGLSSVTSSGFGRTAEVPPPVHRTGPEISIPVREAVSAPPLV FT SSSVGV" FT CDS 339..1058 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:J7FG01" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:J7FG01" FT /protein_id="AFN80600.1" FT /translation="MAASSKRKRGSTSGTKRRKKARYTKWTSTRSSNRDALQVQTFTWG FT EDQAFNAGGRALLLTAFTRGSAENQRKSQETITYKVSINLGISASATVLKYCCKSQPVC FT WLVYDKSPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFTLSCNGST FT FQKDYTNLPVCNTDNLVSVTRFAKGLGVRTEWKDSTTAEASDIKGGALYLVMAPANGLV FT FTARGVIKVYFKSVGNQ" FT CDS complement(join(1264..1674,1761..2456)) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7FH98" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FH98" FT /protein_id="AFN80601.1" FT /translation="MSSPVSERVYSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT FT YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCSKYVRTTSAKFF FT DVGEFHPNVQNPRMPKKALAYCKKSPISDAEYGVFQEIKRPRKKKVDAPSTKDAKMADI FT IKSSTNKEDYLSMVKKSFPFDWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHPVI FT GAWLRDELYTDRSPAERRRSLYICGPIRTGKTSWARSLGSHNYWQHSVDFLHVVQNAKY FT NVIDDIPFKFVPCWKGLVGSQKDITVNPKYGKKRLLSNGIPCIILVNEDEDWLQQMQPN FT QAEWFNANAVVHYMYSGESFFEAGPATA" FT CDS complement(1545..2456) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:J7FGF0" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FGF0" FT /protein_id="AFN80602.1" FT /translation="MSSPVSERVYSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT FT YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCSKYVRTTSAKFF FT DVGEFHPNVQNPRMPKKALAYCKKSPISDAEYGVFQEIKRPRKKKVDAPSTKDAKMADI FT IKSSTNKEDYLSMVKKSFPFDWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHPVI FT GAWLRDELYTVSPYVYSIHNGVSEEQAKLDLQWMSELSRTEVQLNEDVPSISADQFVPV FT RPLGQEVLEVTITGNTPWTSST" XX SQ Sequence 2807 BP; 642 A; 717 C; 698 G; 750 T; 0 other; atggcggagt accctcagtc tgctttcgtt gttacgggtg cgattccaca gcgaagccag 60 gacgtgagct ttgcttcgtc tttgaaggtc actgctttat ctttgttcgc agcatttatt 120 gctgcttgtg tcttgtcatt catttacaag acctgcattg cggatttcat tacgcaattc 180 cggatatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgc tgaggtcccg 240 ccacctgtcc ataggactgg tcccgagatt tcaatacccg taagggaggc tgtttctgcg 300 ccccctttgg tttcttcatc tgttggtgtt tagatttgat ggcagcttcg tcgaagagga 360 agcgtgggag tacatccggc accaagcgcc gcaagaaggc gcggtacacg aagtggacct 420 ctacccgcag ctctaacaga gatgcgttgc aagtgcaaac cttcacctgg ggtgaagacc 480 aggcgttcaa cgccggcggc cgtgcgctac tgctcacggc cttcacacgt ggttccgccg 540 agaaccaacg taaatcccag gagaccataa cctataaggt tagcattaat ctgggcatct 600 ccgcatccgc taccgtactc aagtactgct gcaagagcca gccagtgtgc tggctcgtct 660 acgataagtc cccgactggg ataacggacc tgaccccgtc agacatcttc gatgtgccct 720 cggggttaca gaactggcct tcgacctgga aggtcaagag agaagcgtct catcgcttcg 780 tcgtaaaacg gcgttggccg ttcaccctgt cttgtaacgg cagtacgttc cagaaggact 840 acaccaacct ccctgtctgt aacacagaca accttgtctc tgtaactcgg ttcgccaagg 900 gacttggtgt gcgcaccgag tggaaggaca gtacgacggc ggaggcgtcg gacattaagg 960 gcggagccct gtatcttgtt atggcccccg ctaacgggct tgtgtttact gctcgcggtg 1020 taatcaaggt gtactttaag tcagtgggca accagtagcc catttgtaat gagcccatcg 1080 ggcgaactaa tgaaataaaa tgtgccattt tattcatcgc actacgatgc atgcgtagca 1140 ttaatgaaaa ttacataatt ggttttgtgg gtcgcgaggg ggaacccgga gcacgcaccc 1200 caaaacaccc aacaaacaaa cccaaaatac aatctatgaa atatgcccgg cgcgtgccga 1260 tagtcacgct gtagctgggc ctgcttcgaa gaagctttca cctgagtaca tgtaatgtac 1320 gactgcgtta gcattgaacc actcagcctg attaggctgc atttgttgaa gccagtcttc 1380 atcctcgttc acgaggatta tgcatggaat gccatttgat agcagccgtt tcttgccata 1440 cttcggattt actgtaatat ccttctggct tccgacaagc cctttccaac atggaacaaa 1500 tttaaatgga atgtcatcta ttacattgta ttttgcattt tgaactacgt ggaggaagtc 1560 cacggagtgt tgccagtaat tgtgacttcc aagacttctt gcccaagagg tcttaccggt 1620 acgaattggt ccgcagatat agagggaacg tcttcgttca gctggacttc tgtcctgctc 1680 aattcagaca tccattggag gtcaagcttt gcttgttcct ccgaaacacc gttgtgtatg 1740 gaatagacat aaggacttac agtgtacaat tcgtctcgga gccacgctcc gataacagga 1800 tgttcatcct gtgatggcat cccgaaggga tccacatacg gtggaggagt ggaagggaac 1860 agcgattcag ctgaatactg aaactgctgc aacctcgttg cccagtcgaa tgggaatgat 1920 ttcttgacca tcgagagata gtcctccttg tttgtggaac ttttaatgat atccgccatt 1980 ttggcgtcct tcgtagaagg agcgtccacc ttcttcttcc ttggacgctt gatttcttga 2040 aataccccat attccgcatc ggaaattggg gatttcttgc agtatgctaa tgccttctta 2100 ggcatccttg gattttgaac attgggatga aattctccga cgtcgaagaa ttttgcactt 2160 gtagtgcgta cgtatttgga gcattgtatt atacaatgca gatggtgaga gccatcttta 2220 tgtgcctctt gtgccacgta gatatacgtg ggacagtatt tcttcaataa cgaagaaatg 2280 tattccagaa ggaatacagc tgtgaggttg cacttactgt atgtgaggaa caggttcctc 2340 gctctcacct tgaagcatga agaggagggg gcgtcgatag actgcccacc ccttcctggg 2400 ctctccattt gactgcccac ttcactgtag actctctcac tgacaggtga ggacatctcg 2460 tcagaagcta tcgtggatag cttcagagcc cttagatctt ctttgagatc cgaggttttg 2520 aaaaactctc ttcctagacc gctgccgact gccgagttct ccccccgacg cccttcttat 2580 agggccgggg ggcattgctt tccctgtggg ccggcccggt aaagaggcag cgcaataata 2640 ttaccgctgc cctctttacc cgagggcccc atgctcaacg gggaccgagg cccgcgccca 2700 ctcagcccac taagggctgt ttcccgcaat ctgatttcgg ttttttgctt tgactgacat 2760 ttatgctttg gctgcggctt taaatagccg catcgcacta ctgcgcc 2807 //