ID   JQ948068; SV 1; circular; genomic DNA; STD; VRL; 2817 BP.
XX
AC   JQ948068;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   14-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Paspalum striate mosaic virus isolate AU-1657-2004, complete genome.
XX
KW   .
XX
OS   Paspalum striate mosaic virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2817
RX   DOI; 10.1016/j.virusres.2012.07.018.
RX   PUBMED; 22841490.
RA   Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA   Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA   Martin D.P., Varsani A.;
RT   "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL   Virus Res. 169(1):127-136(2012).
XX
RN   [2]
RP   1-2817
RA   Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA   Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT   ;
RL   Submitted (17-APR-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; d95dea093222a90813467659520cdba3.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Coverage              :: 100
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2817
FT                   /organism="Paspalum striate mosaic virus"
FT                   /host="Paspalum dilatatum"
FT                   /isolate="AU-1657-2004"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="28 S 152.68 E"
FT                   /collection_date="2004"
FT                   /note="genotype: PSMV-A6"
FT                   /db_xref="taxon:1072672"
FT   CDS             1..336
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:J7FFZ8"
FT                   /db_xref="UniProtKB/TrEMBL:J7FFZ8"
FT                   /protein_id="AFN80595.1"
FT                   /translation="MAEYPQSALIVSGAIPRRSQDEGFASSLKVTALSLFAAFIAACVL
FT                   SFIYKTCIADFITQFRLSGLSSVNSSGFGRTVEVPPAVPTRTASEVSIPVREAVSAPPL
FT                   VSSVVGV"
FT   CDS             342..1061
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:J7FH97"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:J7FH97"
FT                   /protein_id="AFN80596.1"
FT                   /translation="MAASSKRKRGSTSATKRRKKPRYTKWTSTRSSNRDALQVQTFTWG
FT                   EDQAFNAAGRAILLTAFTRGSAENQRKSQETITYKVSINLGVSASATVLKYCCKSQPLC
FT                   WLVYDKSPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFTLSCNGST
FT                   FQKDYTNLPVCNTDNLVSVTRFAKGLGVRTEWKDTTTAEASDIKGGALYLVVAPANGLV
FT                   FTARGVIKVYFKSVGNQ"
FT   CDS             complement(join(1277..1675,1762..2457))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:J7FGE8"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGE8"
FT                   /protein_id="AFN80597.1"
FT                   /translation="MSSLVSETSYSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT
FT                   YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAYKDGSHHLHCIIQCSKYVRTTSAKFF
FT                   DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQKIKRPRKKKADAPSTKDAKMSEI
FT                   IKSSTNKEDYLSMVRKTFPFDWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHSVI
FT                   GAWLRDELYTDRSPTERRRSLYICGPTRTGKTSWARSLGSHNYWQHSVDFLHVIQNAKY
FT                   NVIDDIPFKFVPCWKGLVGSQKDITVNPKYGKKRLLSNGIPCIILVNEDEDWLQQMQPS
FT                   QAAWFNANAVVHYMYSGESFFEAL"
FT   CDS             complement(1546..2457)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:J7FHK5"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHK5"
FT                   /protein_id="AFN80598.1"
FT                   /translation="MSSLVSETSYSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT
FT                   YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAYKDGSHHLHCIIQCSKYVRTTSAKFF
FT                   DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQKIKRPRKKKADAPSTKDAKMSEI
FT                   IKSSTNKEDYLSMVRKTFPFDWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHSVI
FT                   GAWLRDELYTVSPYAYSIHIGVSEEQAKLDLQWMSDLSRTEVLLNEDVPSTSVVQQEQE
FT                   RLLGQEVSEVIITGNIPWTSST"
XX
SQ   Sequence 2817 BP; 667 A; 693 C; 693 G; 764 T; 0 other;
     atggcggagt accctcagtc tgctttgatt gtttctggtg cgattccacg gcgaagccag        60
     gacgagggct ttgcctcgtc tttgaaggtc actgctttat ctttgtttgc agcatttatt       120
     gctgcttgtg tcttgtcatt catttacaag acctgcattg cggatttcat tacgcaattc       180
     cgtttatccg gtttaagcag tgtaaattca tctggctttg ggcggaccgt tgaggttccg       240
     ccagctgtcc ctacaaggac agcgtctgag gtttcaattc ccgtaaggga agctgtttct       300
     gctcctccat tggtttcttc cgtggttggt gtttagtttc catggcagct tcgtcgaaga       360
     ggaagcgcgg gagtacttcc gcaaccaagc ggcgaaagaa gccgcggtac acgaagtgga       420
     cctctacccg cagctctaac agagatgcgc tgcaggtaca gaccttcacc tggggtgaag       480
     atcaggcgtt caacgccgca ggacgtgcga tacttctcac ggcctttacg cgtggttctg       540
     ccgagaacca acgcaaatcc caggagacca ttacttacaa ggttagtatt aaccttggtg       600
     tgtcagcatc tgctaccgtc ctcaagtact gctgcaagag ccagccatta tgctggctcg       660
     tatacgataa gtccccgact gggattactg acctgacccc atcagacatc ttcgatgtgc       720
     cctcggggtt acagaactgg ccttccacct ggaaggtcaa acgagaagcg tctcaccgct       780
     tcgtcgtcaa acggcgttgg ccgttcacgt tatcatgcaa cgggagtacg ttccagaagg       840
     actacacaaa cctgcctgtc tgtaacacag acaacctggt gtctgtaacg aggttcgcca       900
     agggacttgg agtgcgaacg gagtggaagg acacaacgac agcggaagcg tcggacatca       960
     agggcggagc cctctacctt gtggtagccc ccgctaacgg gcttgtgttc acagcccgtg      1020
     gtgtaatcaa ggtgtacttt aagtcagtgg gcaaccagta gcccacttgt aatgagccca      1080
     tggggcgaac ttatgaaata aaatcttgca ttttattcat cgcattaaga tgcatgcgta      1140
     gcagcaaagc aaattacata actggttttg tgggtcgcga gggggaaccc ggagcacgca      1200
     cccaaaacac taaatgaaac acacccaact aatctatctg aaaatgccgg acgaggactc      1260
     gcgaaggagt ccgagattac aaagcttcga agaagctttc acccgagtac atgtaatgta      1320
     cgactgcgtt agcattgaac caagcagcct gactaggctg catttgttga agccaatctt      1380
     catcctcgtt cacgaggatt atgcatggaa tgccatttga tagcagccgt ttcttgccat      1440
     acttcggatt tactgtaata tccttctggc ttcctacaag ccctttccaa catggaacaa      1500
     atttaaacgg aatatcatca atgacattat atttggcatt ttgaattacg tggaggaagt      1560
     ccacggaatg ttgccagtaa ttatgacttc cgagacttct tgcccaagaa gtctttcctg      1620
     ttcttgttgg accacagatg tagagggaac gtcttcgttc agtaggactt cggtcctgct      1680
     tagatcagac atccattgga ggtcaagctt tgcttgttcc tccgaaacac cgatgtgtat      1740
     ggaatacgca taaggactta cagtgtataa ttcatctcgg agccatgctc cgataacaga      1800
     gtgttcatcc tgtgatggca tcccgaaggg atccacatac ggtggaggag tggaagggaa      1860
     cagcgattca gctgagtact gaaactgctg caaccttgtt gcccagtcga atgggaaggt      1920
     tttccttacc atcgagagat agtcctcctt gtttgtggaa cttttaatga tttccgacat      1980
     tttggcatct ttcgtagaag gtgcgtccgc cttcttcttc ctcggacgct tgattttctg      2040
     aaatacccca tattccgctt cggaaattgg ggatttcttg cagtatgcca atgccttctt      2100
     aggcattctt ggattttgaa catttggatg aaattctccg acatcgaaga attttgcact      2160
     tgtagtgcgc acgtattttg agcattgtat tatacaatgc agatggtgag agccatcttt      2220
     atatgcttct tgtgccacgt agatatacgt gggacagtat ttcttcaata aagaagaaat      2280
     gtattccaaa aggaatacag cagtgaggtt gcacttactg tatgtgagga acaggtttct      2340
     cgctctcacc ttgaagcatg aagaggaggg ggcgtcgata gactgcccac cccttcctgg      2400
     gctctccatt tgactgccca cttcactgta gcttgtctca ctgacaagtg aggacatctc      2460
     gtcagaagct atcgtggata gcttcagagc ccttagatct tctttgagat ccgaggtttt      2520
     gaaaaactct cttcctagac cgctgccgac tgccgagttc tccccccgat agcccttcgt      2580
     atagggccgg ggggcattgc tttccctgtg ggccggcccg gtaaagaggc agcgcaataa      2640
     tattaccgct gccctcttta cccgagggcc ccatgctcaa cggggaccga ggtggctttg      2700
     cccgggcctt atcagcccac taagggctgt ttcccgcaat ctgatttcga ttttttgctt      2760
     tgactgacat ttctgctttg gatgcggctt taaatagacg catcgcacta cttcgcc         2817
//