ID   JQ948066; SV 1; circular; genomic DNA; STD; VRL; 2817 BP.
XX
AC   JQ948066;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   14-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Paspalum striate mosaic virus isolate AU-QG12-2011, complete genome.
XX
KW   .
XX
OS   Paspalum striate mosaic virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2817
RX   DOI; 10.1016/j.virusres.2012.07.018.
RX   PUBMED; 22841490.
RA   Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA   Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA   Martin D.P., Varsani A.;
RT   "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL   Virus Res. 169(1):127-136(2012).
XX
RN   [2]
RP   1-2817
RA   Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA   Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT   ;
RL   Submitted (17-APR-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 71e758d20462c6f38ed99ef589998426.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Coverage              :: 100
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2817
FT                   /organism="Paspalum striate mosaic virus"
FT                   /host="Paspalum dilatatum"
FT                   /isolate="AU-QG12-2011"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="27.55 S 152.98 E"
FT                   /collection_date="2011"
FT                   /note="genotype: PSMV-A6"
FT                   /db_xref="taxon:1072672"
FT   CDS             1..336
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:J7FGE5"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGE5"
FT                   /protein_id="AFN80587.1"
FT                   /translation="MAEYPQSALIVSGAIPRRSQDESFASSLKVTALSLFAAFIAACVL
FT                   SFIYKTCVADFITQFRLSGLSSVTSSGFGRTVEVPPAVPPRTASEVSIPVREAVSAPPL
FT                   VSSVVGV"
FT   CDS             342..1061
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:J7FHK3"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHK3"
FT                   /protein_id="AFN80588.1"
FT                   /translation="MAASSKRKRGSTSATKRRKKPRYTKWTSTRSSNRDALQVQTFTWG
FT                   EDQAFNAGGRAILLTAFTRGSAENQRKSQETITYKVSINLGVSASATVLKYCCKSQPLC
FT                   WLVYDKSPTGITDLTPSDIFDVPSGLQNWPCTWKVKREASHRFVVKRRWPFTLSCNGST
FT                   FQKDYTNLPVCNTDNLVSVTRFAKGLGVRTEWKDTTTAEASDIKGGALYLVVAPANGLV
FT                   FTARGVMKVYFKSVGNQ"
FT   CDS             complement(join(1277..1675,1762..2457))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:J7FGW1"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGW1"
FT                   /protein_id="AFN80589.1"
FT                   /translation="MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT
FT                   YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGTHHLHCIIQCSKYVRTTSAKFF
FT                   DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMTEI
FT                   IKSSTNKEDYLSMVRKTFPFDWATRLQQFQYSAESLFPSTPQPYVDPFGMPSQDEHSVI
FT                   GAWLRDELYTDRSPAERRRSLYICGPTRTGKTSWARSLGSHNYWQHSVDFLHVIQNAKY
FT                   NVIDDIPFKFVPCWKGLVGSQKDITVNPKYGKKRLLSNGIPCIILVNEDEDWLQQMQPS
FT                   QAAWFNANAVVHYMYSGESFFEAL"
FT   CDS             complement(1546..2457)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:J7FFZ5"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FFZ5"
FT                   /protein_id="AFN80590.1"
FT                   /translation="MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT
FT                   YSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGTHHLHCIIQCSKYVRTTSAKFF
FT                   DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMTEI
FT                   IKSSTNKEDYLSMVRKTFPFDWATRLQQFQYSAESLFPSTPQPYVDPFGMPSQDEHSVI
FT                   GAWLRDELYTVSPYAYSIHIGVSEEQAKLDLQWMSDLSRTEVLLNEDVHSTSVVQQEQE
FT                   RLLGQEVSEVIITGNIPWTSST"
XX
SQ   Sequence 2817 BP; 655 A; 699 C; 697 G; 766 T; 0 other;
     atggcggagt accctcagtc tgctttgatt gtttctggtg cgattccacg gcgaagccag        60
     gacgagagct ttgcctcgtc tttgaaggtc actgctttat ctttgtttgc agcatttatt       120
     gctgcttgtg tcttgtcatt catttacaag acctgcgttg cggatttcat tacgcaattc       180
     cgtttatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgt tgaggttccg       240
     ccagctgtcc ctccaaggac agcgtctgag gtttcaattc ccgtaaggga agctgtttct       300
     gctcctcctt tggtttcttc cgtggttggt gtttagtttc catggcagct tcgtcgaaga       360
     ggaagcgcgg gagtacttcc gcaaccaagc ggcgcaagaa gccgcggtac acgaagtgga       420
     cctctacccg cagctctaac agagatgcgt tgcaggtaca gaccttcacc tggggtgaag       480
     atcaggcgtt caacgccgga ggacgtgcga tacttctcac ggcctttacg cgtggttctg       540
     ccgagaacca acgcaaatcc caggagacca ttacatacaa ggttagtatt aaccttggtg       600
     tgtcagcatc tgctaccgtc ctcaagtact gctgcaagag ccagccatta tgctggctcg       660
     tatacgataa gtccccgact gggattactg acctgacccc atcagacatc ttcgatgtgc       720
     cctcggggtt acagaactgg ccttgcacct ggaaggtcaa acgagaagcg tctcaccgct       780
     tcgtcgtcaa acggcgttgg ccgttcacgt tatcatgcaa cgggagtacg ttccagaagg       840
     actacacaaa cctgcctgtc tgtaacacag acaacctggt gtctgtaacg aggttcgcca       900
     agggacttgg agtgcgaacg gagtggaagg acacaacgac agcggaagcg tcggacatca       960
     agggcggggc cctctacctt gtggtagccc ccgctaacgg gcttgtgttc acagcccgtg      1020
     gtgtaatgaa ggtgtacttt aagtcagtgg gcaaccagta gcccacttgt aatgagccca      1080
     tggggcgaac ttatgaaata aaatcttgca ttttattcat cgcattaaga tgcatgcgta      1140
     gcagcaaagc aaattacata actggttttg tgggtcgcga gggggaaccc ggagcacgca      1200
     cccaaaacac taaatgaaac acacccaact aatctatctg aaaatgccgg acgaggactc      1260
     gcgaaggagt ccgagattac aaagcttcga agaagctttc acccgagtac atgtaatgta      1320
     cgactgcgtt agcattgaac caagcagcct gactaggctg catttgttga agccagtctt      1380
     catcctcgtt cacgaggatt atgcatggaa tgccatttga tagcagccgt ttcttgccat      1440
     acttcggatt tactgtaatg tccttctggc ttccgacaag ccctttccaa catggaacaa      1500
     atttaaacgg aatgtcatct atgacattat atttggcatt ttgaattacg tggaggaagt      1560
     ccacggaatg ttgccagtaa ttatgacttc cgagacttct tgcccaagaa gtctttcctg      1620
     ttcttgttgg accacagatg tagagtgaac gtcttcgttc agcaggactt cggtcctgct      1680
     tagatcagac atccattgga ggtcaagctt tgcttgttcc tccgaaacac cgatgtgtat      1740
     ggaatacgca taaggactta cagtgtataa ttcatctcgg agccatgctc cgataacaga      1800
     gtgttcatcc tgtgatggca tcccgaaggg atccacatac ggttgaggag tggaagggaa      1860
     cagcgattca gctgaatact gaaactgctg caaccttgtt gcccagtcga atgggaaggt      1920
     tttccttacc atcgagagat agtcctcctt gtttgtggaa cttttaatga tttccgtcat      1980
     tttggcatcc ttcgtagaag gtgcgtccgc cttcttcttc ctcggacgct tgatttcctg      2040
     aaatacccca tattccgcct cggaaattgg ggatttcttg cagtatgcca atgccttctt      2100
     aggcattctt ggattttgaa catttggatg aaattctccg acatcgaaga attttgcact      2160
     tgtagtgcgc acgtattttg agcattgtat tatacaatgc agatggtgag ttccatcttt      2220
     atgtgcctct tgtgccacgt agatatacgt gggacagtat ttcttcaata aagaagaaat      2280
     gtattccaaa aggaatacag cagtgaggtt gcacttactg tatgtgagga acaggttcct      2340
     cgctctcacc ttgaagcatg aagaggaggg ggcgtcgata gactgcccac cccttcctgg      2400
     gctctccatt tgactgccca cttcactgtt gcttgtctca ctgacaagtg aggacatctc      2460
     gtcagaagct atcgtggata gcttcagagc ccttagatct tctttgagat ccgaggtttt      2520
     gaaaaactct cttcctagac cgctgccgac tgccgagttc tccccccgat agcccttctt      2580
     atagggccgg ggggcattgc tttccctgtg ggccggcccg gtaaagaggc agcgcaataa      2640
     tattaccgct gccctcttta cccgagggcc ccatgctcaa cggggaccga ggtggctttg      2700
     cccgggcctt atcagcccac taagggctgt ttcccgcaat ccgatttcga ttttttgctt      2760
     tgactgacat ttctgctttg gatgcggctt taaatagacg catcgcactt cttcgcc         2817
//