ID JQ948065; SV 1; circular; genomic DNA; STD; VRL; 2818 BP. XX AC JQ948065; XX DT 26-AUG-2012 (Rel. 113, Created) DT 14-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Paspalum striate mosaic virus isolate AU-1654-2004, complete genome. XX KW . XX OS Paspalum striate mosaic virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2818 RX DOI; 10.1016/j.virusres.2012.07.018. RX PUBMED; 22841490. RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D., RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A., RA Martin D.P., Varsani A.; RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa"; RL Virus Res. 169(1):127-136(2012). XX RN [2] RP 1-2818 RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J., RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.; RT ; RL Submitted (17-APR-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; cfd0f2c164340521bf421b3bdf8d9330. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.9 CC Coverage :: 100 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2818 FT /organism="Paspalum striate mosaic virus" FT /host="Paspalum dilatatum" FT /isolate="AU-1654-2004" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="27.77 S 153.02 E" FT /collection_date="2004" FT /note="genotype: PSMV-A3" FT /db_xref="taxon:1072672" FT CDS 1..333 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:J7FHK2" FT /db_xref="UniProtKB/TrEMBL:J7FHK2" FT /protein_id="AFN80583.1" FT /translation="MAEYPQSALIVSGAIPRRSQDESFASSLKVTALSLFAAFIAACVL FT SFIYKTCIADFITQFRLSGLSSVTSSGFGRTGEVPPAVPRTASEVSIPVREAVSAPPLV FT SSVVGV" FT CDS 339..1058 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:J7FGW0" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:J7FGW0" FT /protein_id="AFN80584.1" FT /translation="MAASSKRKRGSTSATKRRKKPRYTKWTSARSSNRDALQVQTFTWG FT EDQAFNAGGRAILLTAFTRGSAENQRKSQETITYKVSINLGVSASATVLKYCCKSQPLC FT WLVYDKSPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFTLSCNGST FT FQKDYTNLPVCNTDNLVSVTRFAKGLGVRTEWKDTTTAEASDIKGGALYLVVAPANGLV FT FTARGVIKVYFKSVGNQ" FT CDS complement(join(1277..1675,1762..2457)) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7FFZ2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:J7FFZ2" FT /protein_id="AFN80585.1" FT /translation="MSSLVSETSNSEVGSQMENPGRGGQSIDAPSSSCFKVRARNLFLT FT YSKCNLTAVFLLEYISSLLKKYCLTYIYVAQEAHKDGSHHLHCIIQCAKYVRTTSAKFF FT DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMADI FT IKSSTNKEDYLSMVRKTFPFDWATRLQQFHYSAESLFPSTPPPYVDPFGMPSQDEHPVI FT GAWLRDELYTDRSPAERRRSLYICGPTRTGKTSWARSLGSHNYWQHSVDFLHVVQNAKY FT NVIDDIPFKFVPCWKGIVGSQKDITVNPKYGKKRLLSNGIPCIILVNEDEDWLQQMQPN FT QAEWFNANAVVHYMYSGESFFEAL" FT CDS complement(1546..2457) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:J7FH93" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FH93" FT /protein_id="AFN80586.1" FT /translation="MSSLVSETSNSEVGSQMENPGRGGQSIDAPSSSCFKVRARNLFLT FT YSKCNLTAVFLLEYISSLLKKYCLTYIYVAQEAHKDGSHHLHCIIQCAKYVRTTSAKFF FT DVGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMADI FT IKSSTNKEDYLSMVRKTFPFDWATRLQQFHYSAESLFPSTPPPYVDPFGMPSQDEHPVI FT GAWLRDELYTVSPYAYSIHNGVSEEQAKLDLQWMSELSRTEVLLNEDVPYTSAVQQEQE FT RLLGQEVLEVITTGNTPWTSST" XX SQ Sequence 2818 BP; 650 A; 696 C; 694 G; 778 T; 0 other; atggcggagt accctcagtc tgctttgatt gtttctggtg cgattccacg gcgaagccag 60 gacgagagct ttgcctcgtc tttgaaggtc actgctttat ctttgtttgc agcatttatt 120 gctgcttgtg tcttgtcgtt catttacaag acctgcattg cggatttcat tacgcaattc 180 cgtttatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgg tgaggttccg 240 ccagctgtcc cccggacagc gtctgaggtt tcaattcccg taagggaagc tgtttctgct 300 cctcctttgg tttcttccgt ggttggtgtt tagtttacat ggcagcttcg tcgaagagga 360 agcgcgggag tacttccgca accaagcggc gcaaaaagcc gcggtacacg aagtggacct 420 ctgcccgcag ctctaacaga gatgcgttac aggtacagac cttcacctgg ggtgaagatc 480 aggcgttcaa cgccggtgga cgtgcgatac ttctcacggc ctttacgcgt ggttctgccg 540 agaaccaacg caaatcccag gagaccatta catacaaggt tagtattaac cttggtgtgt 600 cagcatctgc taccgtcctc aagtactgct gcaagagcca gccattatgc tggctcgtat 660 acgataagtc cccgactggg attacagacc tgaccccatc agacatcttc gatgtgccct 720 cggggttaca gaactggcct tccacctgga aggtcaaacg agaagcgtct catcgcttcg 780 tcgtcaaacg gcgttggccg ttcacgttat catgcaacgg gagtacgttc cagaaggact 840 acacaaacct gcctgtctgt aacacagaca accttgtctc tgtaacgagg ttcgccaagg 900 gacttggagt gcgaacggag tggaaggaca caacgacagc ggaagcgtcg gacatcaagg 960 gcggagccct ctaccttgtg gtagcccccg ctaacgggct agtgttcaca gcccgtggtg 1020 taatcaaggt gtactttaag tctgtgggca accagtaagc ccacttgtaa ttgagctcag 1080 ttgagcgaac taatgaaata aaatgtctca ttttattcat cgctgtgcga tgcatgcgta 1140 gcataagaga aaattacata actggttttg tgggtcgcga gggggaaccc ggagcacgca 1200 cccaaaacac taaatgaaac acacccaact aatctatctg aaaatgccgg acgaggactc 1260 gcgaaggagt ccgagattac aaagcttcga agaagctttc acccgagtac atgtaatgta 1320 cgactgcgtt agcattgaac cattcagcct gattaggctg catttgttga agccagtctt 1380 catcctcgtt cacgaggatt atgcatggaa taccatttga tagcagccgt ttcttgccat 1440 acttcggatt tactgtaatg tccttttggc ttccaactat ccctttccaa catggaacaa 1500 atttaaacgg aatgtcatct atgacattat attttgcatt ttgaactacg tggaggaagt 1560 ccacggagtg ttgccagtag ttatgacttc caagacttct tgcccaagaa gtctttcctg 1620 ttcttgttgg accgcagatg tatagggaac gtcttcgttc agcaggactt ctgtcctgct 1680 caattcagac atccattgga ggtcaagctt tgcttgttcc tccgaaacac cgttgtgtat 1740 ggaatacgca taaggactta cagtgtataa ttcatctcgg agccatgctc cgatgacagg 1800 atgttcatcc tgtgatggca tcccgaaggg atccacatac ggtggaggag ttgaagggaa 1860 cagcgattca gctgagtaat gaaactgctg caaccttgtt gcccagtcga atgggaaggt 1920 tttccttacc atcgagagat agtcctcctt gtttgtggaa cttttaatga tatccgccat 1980 tttggcgtcc ttcgtagaag gagcgtctgc cttcttcttc cttggacgct tgatttcctg 2040 aaatacccca tattccgctt cggaaatcgg ggatttcttg cagtatgcta atgccttctt 2100 gggcattctt ggattttgga catttggatg aaattctccg acatcgaaga attttgcact 2160 tgtagtgcgc acgtattttg cgcattgtat tatacaatgc agatggtgag agccatcttt 2220 atgtgcctct tgtgccacgt agatatacgt gagacagtat ttcttcaata aggaagaaat 2280 gtattccaga aggaatacag ccgtgaggtt gcacttactg tatgtgagga acaggttcct 2340 cgctctcacc ttgaagcatg aagaggaggg ggcgtcgata gactgcccac cccttcctgg 2400 gttctccatt tgactgccca cttcactgtt gcttgtctca ctgacaagtg aggacatctc 2460 gtcagaagct atcgtggata gcttcagagc ccttagatct tctttgagat ccgaggtttt 2520 gaaaaactct cttcctagac cgctgccgac tgccgagttc tccccccgat agcccttctt 2580 atagggccgg ggggcattgc tttctctgtg ggccggcccg gtaaagaggc agcgcaataa 2640 tattaccgct gccctcttta cccgagggcc ccatgctcaa cggggaccga ggtgctttca 2700 tgccgggccc tatctgccca ctaagggctg tttcccgcaa tctgatttcg attttttgct 2760 ttgactgaca tttctgcttt ggatgcggct ttaaatagcc gcatcgcact acttcgcc 2818 //