ID JQ948063; SV 1; circular; genomic DNA; STD; VRL; 2815 BP. XX AC JQ948063; XX DT 26-AUG-2012 (Rel. 113, Created) DT 14-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Paspalum striate mosaic virus isolate AU-1659-2004, complete genome. XX KW . XX OS Paspalum striate mosaic virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2815 RX DOI; 10.1016/j.virusres.2012.07.018. RX PUBMED; 22841490. RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D., RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A., RA Martin D.P., Varsani A.; RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa"; RL Virus Res. 169(1):127-136(2012). XX RN [2] RP 1-2815 RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J., RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.; RT ; RL Submitted (17-APR-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; 3c7cb92e4e129825b02e88d6ec8d9849. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.9 CC Coverage :: 100 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2815 FT /organism="Paspalum striate mosaic virus" FT /host="Paspalum dilatatum" FT /isolate="AU-1659-2004" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="27.46 S 152.65 E" FT /collection_date="2004" FT /note="genotype: PSMV-A1" FT /db_xref="taxon:1072672" FT CDS 1..333 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:J7FFY8" FT /db_xref="UniProtKB/TrEMBL:J7FFY8" FT /protein_id="AFN80575.1" FT /translation="MAEYPQSAFIVSGAVPRRSQDESFASSLKVTALSLFAAFIAACVL FT SFIYKTCIAEFITQFRLSGLSSVTSSGFGRTGEVPPAVPRTASEVSIPVREAVSAPPLV FT SSVVGV" FT CDS 339..1058 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:J7FH89" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:J7FH89" FT /protein_id="AFN80576.1" FT /translation="MAASSKRKRGSTSATKRRKKPRYTKWTSARISNRDALQVQTFTWG FT EDHAFNAGGRAILLTAFTRGSAENQRKSQETITYKVSINLGVSASATVLKYCCKSQPLC FT WLVYDKCPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFTLSCNGST FT FQKDYTNLPVCNTDNLVSVTRFAKGLGVRTEWKDTTTAEASDIKGGALYLVVAPANGLV FT FTARGVIKVYFKSVGNQ" FT CDS complement(join(1274..1672,1759..2454)) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7FGE3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:J7FGE3" FT /protein_id="AFN80577.1" FT /translation="MSSLVSETNYSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT FT YSKCNLTAVFVLEYISSFLKKYCPTYIYVAQEAHKDGSHHLHCIIQCTKYVRTTSAKFF FT DIGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMEEI FT IKSSTNKEDYLSMVRKAFPFEWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHSVI FT GAWLREELYTDRSPAERRRSLYICGPTRTGKTSWARSLGSHNYWQHSVDFLHVVQNAKY FT NVIDDIPFKFVPCWKGLVGSQKDITVNPKYGKKRLLSNGIPCIILVNEDEDWLQQMQPS FT QADWFKANAVVHYMYSGESFFEAL" FT CDS complement(1543..2454) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:J7FHK1" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FHK1" FT /protein_id="AFN80578.1" FT /translation="MSSLVSETNYSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLT FT YSKCNLTAVFVLEYISSFLKKYCPTYIYVAQEAHKDGSHHLHCIIQCTKYVRTTSAKFF FT DIGEFHPNVQNPRMPKKALAYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMEEI FT IKSSTNKEDYLSMVRKAFPFEWATRLQQFQYSAESLFPSTPPPYVDPFGMPSQDEHSVI FT GAWLREELYTVSPYAYSIHNGVSEEQAKLDLQWMSQLSRTEVLLNEDVPSTYADQQEQE FT RLLGQEVLEVITTGNTPWTSST" XX SQ Sequence 2815 BP; 643 A; 687 C; 698 G; 787 T; 0 other; atggcggagt accctcagtc tgctttcatc gtaagtggtg cggttccacg gcgaagccag 60 gacgagagct ttgcctcgtc tttgaaggtc actgctttat ctttgtttgc cgcatttatt 120 gctgcttgtg tcttgtcatt catttacaag acctgcattg cggaattcat tacgcaattc 180 cgtttatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgg tgaggttccg 240 ccagctgtcc ctcggacagc ttctgaggtt tcaattcccg taagggaagc tgtttctgct 300 cctcctttgg tttcttccgt ggttggtgtt tagtttccat ggcagcttcg tcgaagagga 360 agcgcgggag tacttccgct accaagcggc gcaagaagcc gcggtacacg aagtggacct 420 ctgcccgcat ctctaacaga gatgcgttgc aggtacagac cttcacctgg ggtgaagatc 480 acgcgttcaa cgccggagga cgtgcgatac ttctcacggc ctttacgcgt ggttctgccg 540 agaaccaacg caaatcccag gagaccatta catacaaggt tagtattaac cttggtgtgt 600 cagcatctgc taccgtcctc aagtattgct gcaagagcca gccattatgc tggctcgtgt 660 atgataagtg ccctactggg attactgacc tgaccccatc agacatcttc gatgtgccct 720 cggggttaca gaactggcct tccacctgga aggtcaaacg agaagcgtcc catcgcttcg 780 tcgtcaaacg gcgttggccg ttcacgttat catgcaacgg gagtacgttc cagaaggatt 840 acacaaacct gcctgtctgt aacacagaca acttggtgtc tgtaacgagg ttcgccaagg 900 gacttggagt gcgaacggag tggaaggaca caacgacagc ggaagcgtcg gacattaagg 960 gcggagccct ctaccttgtg gtagcccctg ctaacgggct tgtgtttaca gcccgcggtg 1020 taatcaaggt gtactttaag tcagtgggca atcagtagcc cacttgtaat gagcccattg 1080 ggcgaactta tgaaataaaa tcttggattt tattcatcgc attaagatgc atgcgtagca 1140 gcaaagcaaa ttacataact ggttttgtgg gtcgcgaggg ggaacccgga gcacgcaccc 1200 aaaacactaa atgaaacata cccaactgat ctatctgaaa atgccggacg aggactcgcg 1260 aaggagtccg agattacaaa gcttcgaaga agctttcacc cgagtacatg taatgtacga 1320 ctgcgttagc tttgaaccag tcagcctgac taggctgcat ttgttgaagc cagtcttcat 1380 cctcgtttac gaggattata catggaatgc catttgatag cagccgtttc ttgccatact 1440 tcggatttac tgtaatgtcc ttctggcttc caactaaccc tttccaacat ggaacgaatt 1500 taaatggaat gtcatctatt acattgtatt ttgcattttg aactacgtgg aggaagtcca 1560 cggagtgttg ccagtagtta tgacttccaa gacttcttgc ccaagaagtc tttcctgttc 1620 ttgttggtcc gcatatgtag agggaacgtc ttcgttcagc aggacttctg tcctgctcaa 1680 ttgagacatc cattggaggt caagctttgc ttgttcctcc gaaacaccgt tgtgtatgga 1740 ataggcataa ggacttacag tgtataattc ttctcggagc cacgctccga taacagaatg 1800 ttcatcctgt gatggcatcc cgaagggatc cacatacggt ggaggagtgg aagggaacag 1860 cgattcagct gagtactgaa attgctgcaa ccttgttgcc cattcgaatg ggaaggcttt 1920 ccttaccatc gagagatagt cctccttgtt tgtggaactt ttaatgattt cctccatttt 1980 ggcgtccttc gtagaaggag cgtccgcctt cttctttctt ggacgcttga tttcttgaaa 2040 taccccatat tccgcctcgg atattgggga tttcttgcag tatgcaagag ccttcttagg 2100 cattcttgga ttttggacat ttggatgaaa ttctccgata tcgaagaatt ttgcacttgt 2160 agtgcgcacg tattttgtgc attgtattat gcaatgcaga tggtgagagc catctttatg 2220 tgcctcttgt gccacgtaga tatacgtggg acagtatttc ttcaaaaaag aagaaatgta 2280 ttcgagaacg aatacagccg tgaggttgca cttactgtat gtgaggaata ggttcctcgc 2340 tctcaccttg aagcacgaag aggagggggc gtcgatagac tgcccacccc ttcctgggct 2400 ctccatttga ctgcccactt cactgtagtt tgtctcactg acaagtgagg acatctcgtc 2460 agaagctatc gtggatagct tcagagccct tagatcttct ttgagatccg aggttttgaa 2520 aaacttcctg tctagaccgc tgccgactgc cgagttctcc ccccgatagc ccttcttaat 2580 gggccggggg gcattgcttt ccctgtgggc cggcccggta aagaggcagc gcactaatat 2640 taccgctgcc ctctttaccc gagggcccca tgctcaacgg ggaccgaggt gctttcatgc 2700 cgggccctat cagcccacta agggctgttt cccgcaatct gatttcgatt ttttgttttg 2760 actgacattt ctgcttttga tgcggcttta aatagccgca tcgcactact tcgct 2815 //