ID JQ948061; SV 1; circular; genomic DNA; STD; VRL; 2806 BP. XX AC JQ948061; XX DT 26-AUG-2012 (Rel. 113, Created) DT 14-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Paspalum dilatatum striate mosaic virus isolate AU-1660-2004, complete DE genome. XX KW . XX OS Paspalum dilatatum striate mosaic virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2806 RX DOI; 10.1016/j.virusres.2012.07.018. RX PUBMED; 22841490. RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D., RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A., RA Martin D.P., Varsani A.; RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa"; RL Virus Res. 169(1):127-136(2012). XX RN [2] RP 1-2806 RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J., RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.; RT ; RL Submitted (17-APR-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; 46dd378c9dade927d5702a11592e01a1. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.9 CC Coverage :: 100 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2806 FT /organism="Paspalum dilatatum striate mosaic virus" FT /host="Paspalum dilatatum" FT /isolate="AU-1660-2004" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="27.33 S 152.77 E" FT /collection_date="2004" FT /note="genotype: PDSMV-A3" FT /db_xref="taxon:1196236" FT CDS 1..342 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:J7FHL4" FT /db_xref="UniProtKB/TrEMBL:J7FHL4" FT /protein_id="AFN80643.1" FT /translation="MAEYPESALVVSGAIPRRSQDESFASSLKVTALSLFAAFIAACVL FT SFIYKTCIAEFITQYRLSGLSSVTSSGFGRTVEDPPAVPRTASEVSIPVAVRSGIPPVI FT SGPSGIPGN" FT CDS 351..1070 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:J7FHL5" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:J7FHL5" FT /protein_id="AFN80644.1" FT /translation="MPSSSKRKRGSTSGTKRRKKPRTTKWTGSRSASREALQVQTFTWS FT EDQAFNAGGRAILLSAYTRGSGENQRKSQETITYKVALNLGVSASATVLKYCCSSQPIC FT WLVYDKTPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFKLECNGST FT FQKDYTNLPVCNTQNLVSVTRFAKGLGVRTEWKDTTTAESSDIKGGALYLVIAPANGLV FT FTARGVIKCYFKSVGNQ" FT CDS complement(join(1278..1682,1766..2461)) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7FHA9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FHA9" FT /protein_id="AFN80646.1" FT /translation="MASHVSETEGARGQVGAPPLRGEEVGAPGAVEACFEVRSRNVFLT FT YSKCHLEPAYMLERLSRLLKKWDPTYTYVAREEHKDGSYHLHCLVQCRKYIRTKSAKFF FT DVEEFHPNVQNARVPHKVLAYIKKGPVCFVEHGAFKDEAKKKKRKADAPSTKDAKMASI FT ISQSTSREDYLGMVKKEFPFDWATRLQQFEYSAQALFPCLPPPYVDPFGMPSQAEHQVL FT GAWLREELYSQDRSPAERRRSLYICGPTRTGKTSWARSLGCHNYWQHSVDFLHVIPTAR FT YNVIDDIPFKFVPCWKGLVGAQRDITVNPKYGKKRLLPNGIPSIILVNEDEDWPQYMQP FT SQAAWFEDNCVVFYMNQGFRFFETTA" FT CDS complement(1523..2461) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:J7FG25" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FG25" FT /protein_id="AFN80645.1" FT /translation="MASHVSETEGARGQVGAPPLRGEEVGAPGAVEACFEVRSRNVFLT FT YSKCHLEPAYMLERLSRLLKKWDPTYTYVAREEHKDGSYHLHCLVQCRKYIRTKSAKFF FT DVEEFHPNVQNARVPHKVLAYIKKGPVCFVEHGAFKDEAKKKKRKADAPSTKDAKMASI FT ISQSTSREDYLGMVKKEFPFDWATRLQQFEYSAQALFPCLPPPYVDPFGMPSQAEHQVL FT GAWLREELYSVSPYAYSIHNGVTEDQAKLDLQWISQLSRTEVLLNEGEASTSVDQQEQA FT RLLGQEVLDVITTGSIPWTSSTSFPLPDTTS" XX SQ Sequence 2806 BP; 636 A; 718 C; 740 G; 712 T; 0 other; atggcggagt accctgagtc tgctttagtg gtaagtggtg cgattccacg gcgaagccag 60 gacgagagct ttgcctcgtc tttgaaggtc actgctttat ctttatttgc agcatttatt 120 gctgcttgcg tcttgtcatt catttacaag acgtgcattg cggaattcat tacgcaatac 180 cgtttatccg gtttaagcag tgtaacttca tctggctttg ggcggaccgt tgaggatccg 240 ccagctgtcc cccggacagc gtctgaggtt tcaattccag ttgctgttag aagtggtatt 300 cctcctgtga tttcaggtcc ttccggaatt cccggaaatt gacgttggag atgccgtctt 360 cctcgaagag gaagaggggg agtacctctg gtactaagcg gcgtaagaag ccgcgaacca 420 cgaagtggac tgggtcccgc agcgcatcta gagaggcgct gcaagtacag accttcacct 480 ggagtgaaga ccaggcgttc aacgccggtg gccgagcgat ccttctctcg gcctatacgc 540 gcggttctgg cgagaaccag cgcaaatccc aggaaaccat tacgtataag gttgctctca 600 accttggtgt ttccgcatcc gctacggtac tcaagtactg ctgcagcagc cagccgatat 660 gctggctggt gtatgacaag acgcctactg ggattactga cctgaccccg tcagacatct 720 tcgatgtgcc ctcggggtta cagaactggc cttcgacctg gaaggtcaaa cgcgaagcgt 780 ctcaccgctt tgtggtgaaa cggcgttggc cgtttaagct ggaatgtaac ggcagtacgt 840 tccagaagga ctacacgaac ctgcctgtct gcaatacgca gaacctggtg tctgtaacga 900 ggttcgccaa gggacttgga gtgcgaacgg agtggaagga cacaacgacg gcggagtcgt 960 cggatatcaa gggcggagcc ctgtaccttg tgatagctcc tgctaacggg cttgtgttca 1020 cagcccgtgg tgtaatcaag tgttacttta agtctgtggg taatcagtag cccactgtaa 1080 ttgagcccat tgggcgatct atgatctgaa ataaaatggc acattttatt tatcgcattg 1140 cgatgaacgc gtagcgttac aaattacaat acatagcgca gcctcgggct aaagaccgag 1200 tctgaagcga ccctagtaca ataccaccgg aaaaacaata tctatctgat aatgcctcgc 1260 gcgtaggtgt gtaacaccta cgccgtcgtt tcgaagaaac ggaacccttg gttcatgtag 1320 aagacgacgc agttgtcctc aaaccatgca gcctgtgatg gctgcatgta ttggggccag 1380 tcttcatcct cgttcacgag gattatggaa ggtattccgt taggaagaag acgtttcttc 1440 ccgtactttg gattgacggt gatgtccctc tgcgccccaa caagcccctt ccaacaagga 1500 acaaacttga aagggatgtc atctatgacg ttgtatctgg cagtgggaat gacgtggagg 1560 aagtccacgg aatgctgcca gtagttatga catccaagac ttcttgccca agaagtcttg 1620 cctgttcttg ttggtccaca gatgtagagg cttctccttc gttcagcagg acttctgtcc 1680 tgctcaattg agatatccat tggaggtcaa gcttggcttg atcctccgtg actccgttgt 1740 gaatggaata tgcataggga cttacagaat ataattcttc tcggagccat gctccgagca 1800 cctgatgttc tgcctgtgaa ggcatcccga agggatcaac atacggagga gggaggcagg 1860 ggaacagcgc ttgcgctgag tattcgaact gctgcaacct tgttgcccag tcgaatggaa 1920 attctttttt gaccatccca agatagtcct cacgtgatgt tgattgagaa attatagacg 1980 ccattttggc gtccttcgtg gaaggagcgt cagccttcct cttcttcttc ttcgcttcgt 2040 ctttgaaagc cccgtgctca acgaagcata cggggccttt cttgatgtac gcaagtacct 2100 tgtgaggtac ccgcgcgttc tgcacgttag gatgaaattc ttcgacatcg aagaatttag 2160 cactcttagt gcgaatgtat tttctgcact gtactagaca gtgcaaatgg taagagccat 2220 ccttgtgctc ttcccttgcg acgtatgtat acgtcgggtc ccacttcttg agaagtctgg 2280 agaggcgttc aagcatgtac gccggctcca ggtggcactt actgtatgtc aggaagacat 2340 tcctgcttct tacctcgaag caagcttcga ccgcccctgg ggcgccaact tcctcccccc 2400 gaaggggggg ggcgccaact tgccccctgg cgccctctgt ctcactgaca tgtgaggcca 2460 tcttggaaga agctatcgtg gatagcttca cagccgtagg atgtgctttg agatccgagg 2520 ttttgaaaaa ctctcttgac aaccgtcgcc ccttgccccc ttccgctgct gaagggccta 2580 ttaaataggc cgcagcggag atggctttaa attgggccgg cccccccgga aagtagggcg 2640 acgagataat attaccgtcg ccctgctttg cgagggccca tgctcaacgg gcccgagcgg 2700 tcccggccca tccactaagg attgctcccc gcattacgat aaatggattt gactgccgct 2760 ttacttttaa cgatgtctat aaaagactgc atcgcactac gacgcc 2806 //