ID JQ948060; SV 1; circular; genomic DNA; STD; VRL; 2749 BP. XX AC JQ948060; XX DT 26-AUG-2012 (Rel. 113, Created) DT 14-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Chloris striate mosaic virus isolate AU-3009-2011, complete genome. XX KW . XX OS Chloris striate mosaic virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2749 RX DOI; 10.1016/j.virusres.2012.07.018. RX PUBMED; 22841490. RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D., RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A., RA Martin D.P., Varsani A.; RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa"; RL Virus Res. 169(1):127-136(2012). XX RN [2] RP 1-2749 RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J., RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.; RT ; RL Submitted (17-APR-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; 84c9278eb645739c5e36283faf589cff. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.9 CC Coverage :: 100 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2749 FT /organism="Chloris striate mosaic virus" FT /host="Chloris gayana" FT /isolate="AU-3009-2011" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="28.32 S 153.49 E" FT /collection_date="2011" FT /note="genotype: CSMV-A5" FT /db_xref="taxon:10820" FT CDS 1..342 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:J7FHM4" FT /db_xref="UniProtKB/TrEMBL:J7FHM4" FT /protein_id="AFN80693.1" FT /translation="MEYQGYEQLSRSGSVEQPSPGASFAFPVKVTALVCFAAIVGACIL FT VFLYKTCIEDCITQYRLTDYGCHTSAGFGGALPVTSAQASAATSTPVCVPCAPQVQASV FT DPPSVSRVS" FT CDS 339..1064 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:J7FGY2" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:J7FGY2" FT /protein_id="AFN80694.1" FT /translation="MSPASSWKRKRPSSSSAQASKKRRVYRPAVSRSLARREPLQVQDF FT VWDTDVSFNRGGGCYLLTSYARGSAENQRKTAETITYKVAVNLGCAISGTMQQYCISSR FT PVCWLVYDASPTGSAVTPKDIFGYPEGLVNWPTTWKVARAVSHRFIVKRRWVFTMESNG FT SRFDRDYTNLPAAIPQSLPVLNKFAKQLGVRTEWKNAEGGDFGDIKSGALYLVMAPANG FT AVFVARGNVRVYFKSVGNQ" FT CDS complement(join(1263..1664,1751..2437)) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7FHB9" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FHB9" FT /protein_id="AFN80696.1" FT /translation="MSSLPVSESEGEGSGTSVQVPSRGWQVTPGEKAFSLRTKHVFLTY FT PRCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFD FT LGEFHPNIQAARQPSSTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN FT ATTRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW FT LQQELYTVRSPGVRRRSLYICGPNVPGKTSWARSLGTHHYWQHSVNFLEEWNCQAQFNI FT IDDIPFKFVPCWKGLVGSQYDLTVNPKYGKKKRIPNGIPCIILVNEDEDWLQSMSTQQV FT DWFHGNAVVYHLLPGETFIPSE" FT CDS complement(1550..2437) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:J7FG50" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FG50" FT /protein_id="AFN80695.1" FT /translation="MSSLPVSESEGEGSGTSVQVPSRGWQVTPGEKAFSLRTKHVFLTY FT PRCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFD FT LGEFHPNIQAARQPSSTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN FT ATTRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW FT LQQELYTVSPQALSLHAGISEEQARIDLQWMSDLTRSGALESGDEACTSADQMYLVRPL FT GPEVLELITTGSTQ" XX SQ Sequence 2749 BP; 586 A; 715 C; 751 G; 697 T; 0 other; atggagtacc agggttacga gcagctcagt agatctggat ccgtggagca acccagcccc 60 ggtgctagct ttgcttttcc ggtgaaggtg acagccctcg tctgtttcgc agcgattgtt 120 ggagcctgta ttcttgtatt cttgtacaag acgtgcattg aggactgcat aacgcagtac 180 cggcttacgg attacggctg tcacacttcg gctgggttcg gaggtgcgtt acccgtgacc 240 tctgcgcaag ctagtgctgc taccagcacc cctgtgtgtg ttccctgtgc tcctcaggta 300 caggcgtccg tggacccacc ctctgtaagt agggtgtcat gagtcctgcc agctcatgga 360 agaggaagag gccctcctct tcctctgctc aggcgtctaa gaagcgccgc gtgtacaggc 420 ctgctgtttc acgttctctc gctcggcgag aacctctgca ggtgcaagac tttgtctggg 480 atacagatgt gtctttcaac aggggaggag gttgctacct tctcaccagc tatgctcgag 540 gctctgccga gaatcagcgg aagaccgctg agaccatcac gtacaaggtg gcagttaatc 600 tggggtgtgc tatctccggg acgatgcagc aatattgcat cagttcccga ccggtctgct 660 ggctcgtata cgacgcgtcc ccaacaggct ctgctgttac cccgaaggac atcttcgggt 720 acccggaagg attagttaac tggcctacta cttggaaggt ggccagagcg gtgtcccacc 780 gcttcatagt gaagcgccgc tgggtcttca caatggagtc taacggctcg cgcttcgacc 840 gtgactacac caacctcccg gctgctatac cgcagtccct tcccgttctg aacaagttcg 900 cgaagcagtt gggcgtgcgg acggagtgga agaacgctga aggcggagac ttcggcgaca 960 taaagagcgg agctctttac ctagtcatgg ctccggctaa cggagctgtc tttgtagctc 1020 gcggcaatgt ccgcgtgtat tttaagtctg ttgggaatca gtgattcccc agacttcatt 1080 ttcaataaac tgtgagagtt tgcttgccaa acaacataat ttcattcata acgatggcgc 1140 agtatgcgca atacatttaa aagaagggcg gacaggacaa aggcgggcgg gttcgtgaac 1200 ccgcacaacc taacaccaca tcccaagaat gagttttgga atatgcagcc gctggcttca 1260 cgttattccg aaggaatgaa ggtttcccct gggagaaggt gatacaccac ggcgttgccg 1320 tgaaaccagt cgacctgttg ggtcgacatc gactgcagcc agtcctcatc ctcgtttacg 1380 aggataatac atggaatccc gttggggatt cttttcttct tcccgtactt ggggtttacc 1440 gtcaggtcat actggctgcc gacgagtccc ttccaacaag ggacgaactt gaacgggatg 1500 tcatcaatga tgttgaactg ggcttggcag ttccattcct ctaggaagtt cactgagtgc 1560 tgccagtagt gatgagttcc aagacttctg gcccaagagg tcttaccagg tacatttggt 1620 ccgcagatgt acaggcttcg tctccggact ccagggctcc tgacctggtt aggtcagaca 1680 tccattggag gtcaatacgt gcttgttcct ccgaaatacc tgcatgcaga ctgagggctt 1740 gaggacttac agtatacagc tcctgctgga gccattcacc tatgaccgga tggtcagaca 1800 tgtccctcga cgcgtatggc gcggagtagg tttgaggagg gtcagggaac agggcatttg 1860 cactgtactg gaattgctgt aggcgtaccg cccattcgaa agggaagctc tttcgaacca 1920 tgctcagata ttcgtccctg gtcgtggcat ttgccatgat ttgtttcatg gtcttgtccc 1980 tagaggccga ctgggtcgga ctcctgttga ccttaggttt caggaatttt ccaaattccc 2040 agctactctc tggatgtttc atacagtatt tcagagtact ggatggctgc cttgcagctt 2100 ggatgtttgg atggaattca cccaggtcga aatatttggg agaggtggtt ctgaaatttg 2160 cttcgagctg gacgaaggca tgtaagtggg gctcaccgtc agcatggaat tctctggaaa 2220 tgtaaatata attacatttc ttatttttca ggcggtcagc aattttctga ccagcctctt 2280 cgggactgat aggacatctt ggataggtga ggaagacatg tttagtcctc aaggagaagg 2340 ccttctcccc aggcgtcact tgccatccgc gagatggcac ttgtacggaa gtgccacttc 2400 cctccccctc gctctcactg acaggcaggg acgacataat aaaagacgac gtggcttgat 2460 ggacagccgt aggatctgtt ctgagatgtg gactcggagc aaaactatct ctaataccag 2520 ttgcccacct gccgagtgcc ctcttcggct tttataggcc taacaggccg gctctttgca 2580 tgggcggggg ggcaaccata atattaccgc ccccccggcc catgcgaggg cccatgctca 2640 acgggtcccg agcggctttg gctttcacat gggcttgtcc cccgcgatgc gatctgccct 2700 gccatgcttt ggcggcttta taaagccgtt ctcagacctt tggtttcaa 2749 //