ID   JQ948059; SV 1; circular; genomic DNA; STD; VRL; 2749 BP.
XX
AC   JQ948059;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   14-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Chloris striate mosaic virus isolate AU-1649-2004, complete genome.
XX
KW   .
XX
OS   Chloris striate mosaic virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2749
RX   DOI; 10.1016/j.virusres.2012.07.018.
RX   PUBMED; 22841490.
RA   Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA   Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA   Martin D.P., Varsani A.;
RT   "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL   Virus Res. 169(1):127-136(2012).
XX
RN   [2]
RP   1-2749
RA   Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA   Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT   ;
RL   Submitted (17-APR-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 8772343f8fbb1a01347f4fe2eeb30fbe.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Coverage              :: 100
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2749
FT                   /organism="Chloris striate mosaic virus"
FT                   /host="Chloris gayana"
FT                   /isolate="AU-1649-2004"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="27.99 S 153 E"
FT                   /collection_date="2004"
FT                   /note="genotype: CSMV-A4"
FT                   /db_xref="taxon:10820"
FT   CDS             1..342
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:J7FGY1"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGY1"
FT                   /protein_id="AFN80689.1"
FT                   /translation="MQYQGYEQLSRSGSVEQPSPGASFAFPVKVTALVCFAAIVGACIL
FT                   VFLYKTCIADCITQYRLTDYGCHTSAGFGGALPVTSAQASAATSTPVCVPCAPQVQASV
FT                   DLPSVSRVS"
FT   CDS             339..1064
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:J7FG49"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:J7FG49"
FT                   /protein_id="AFN80690.1"
FT                   /translation="MSPASSWKRKRPSSSSAQASKKRRVYRPAVSRSLARREPLQVQDF
FT                   VWDTDVAFNRGGGCYLLTSYARGSAENQRKTAETITYKVAVNLGCAISGTMQQYCISSR
FT                   PVCWLVYDASPTGSAVTPKDIFGYPEGLVNWPTTWKVARAVSHRFIVKRRWVFTMESNG
FT                   SRFDRDYTNLPAAIPQSLPVLNKFAKQLGVRTEWKNAEGGDFGDIKSGALYLVMAPANG
FT                   AVFVARGNVRVYFKSVGNQ"
FT   CDS             complement(join(1263..1664,1751..2437))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:J7FGI6"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGI6"
FT                   /protein_id="AFN80692.1"
FT                   /translation="MSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTY
FT                   PRCPISPEEAGQKIAEGLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFD
FT                   LDEFHPNIQAARQPTNTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN
FT                   ATNRDEYLSMIRKSFPFEWAVRLQQFQYSANALFPDPPQSYSAPYASRDMSDHPVIGEW
FT                   LQQELYTVRSPGVRRRSLYICGPTRTGKTSWARSLGTHHYWQHSVNFLEEWNCQAQFNI
FT                   IDDIPFKFVPCWKGLVGSQYDLTVNPKYGKKKRIPNGIPCIILVNEDEDWLQSMSTQQV
FT                   DWFHGNAVVYHLLPGETFIPTE"
FT   CDS             complement(1550..2437)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:J7FHB8"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHB8"
FT                   /protein_id="AFN80691.1"
FT                   /translation="MSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTY
FT                   PRCPISPEEAGQKIAEGLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFD
FT                   LDEFHPNIQAARQPTNTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN
FT                   ATNRDEYLSMIRKSFPFEWAVRLQQFQYSANALFPDPPQSYSAPYASRDMSDHPVIGEW
FT                   LQQELYTVSPQALSLHAGISEEQARIDLQWMSDLTRSGALESGDEACTSADQLVPVRPP
FT                   GPEVLELITTGSTQ"
XX
SQ   Sequence 2749 BP; 581 A; 722 C; 749 G; 697 T; 0 other;
     atgcagtacc aggggtacga gcagctcagt agatctggat ccgtggagca acccagcccc        60
     ggtgctagct ttgctttccc ggtgaaggtg acagccctcg tctgtttcgc agcgattgtt       120
     ggagcctgta ttcttgtatt cttgtacaag acgtgcattg cggactgcat aacgcagtac       180
     cggcttacgg actacggctg tcatacttcg gctgggttcg gaggtgcgtt acccgtgacc       240
     tctgcgcaag ctagtgctgc taccagcacc cctgtgtgtg ttccctgtgc tcctcaggta       300
     caggcgtccg tggatctacc ctccgtaagt agggtctcat gagtcctgcc agctcatgga       360
     agaggaagag gccctcttct tcctctgctc aggcgtctaa gaagcgccgc gtctacaggc       420
     ctgctgtttc acgttctctc gctcgacgag aacctttgca ggtgcaagac tttgtctggg       480
     atactgacgt tgctttcaac aggggaggag gttgctacct tctcaccagc tatgctcgag       540
     gctctgccga gaatcagcgg aagaccgctg agaccatcac gtacaaggtg gcagttaatt       600
     tggggtgtgc tatctccggg acgatgcagc aatattgcat cagctcccga ccggtctgct       660
     ggcttgttta tgatgcgtcc ccaacaggct ctgctgttac cccgaaagac atcttcgggt       720
     acccggaagg attagttaac tggcctacta cttggaaggt ggccagagcg gtgtcccacc       780
     gcttcatagt gaagcgccgc tgggtcttca ccatggagtc caacggctcg cgcttcgacc       840
     gtgactacac caacctcccg gctgctatac cgcagtccct tcccgttctg aacaagttcg       900
     cgaagcagtt gggcgtgcgg acggagtgga agaacgctga aggcggagac ttcggcgaca       960
     taaagagcgg agctctttac ctagtcatgg ctccggctaa cggagctgtc tttgtagctc      1020
     gcggcaatgt ccgcgtgtat tttaagtctg ttgggaatca gtgattcccc agacttcatt      1080
     ttcaataaac tgtgagagtt tgcttgccaa acaacataat ttcattcata acgatggcgc      1140
     agtatgcgca atacatttaa aagaagggcg gacaggacaa aggcgggcgg ctaagggaag      1200
     ccgcaagggg caacaccaca tcccaagaat gagttttgga atatgcagcc gccggcttca      1260
     cgctattccg taggaatgaa ggtttccccc ggaagtagat gatacaccac ggcgttgccg      1320
     tgaaaccagt cgacctgttg ggtcgacatc gactgcagcc aatcctcatc ctcgtttacg      1380
     aggataatac acgggatccc gttggggatt cttttcttct tcccgtactt ggggtttacc      1440
     gtcaggtcgt actggctgcc gacgagtccc ttccaacaag ggacgaactt gaacgggatg      1500
     tcatcaatga tgttgaactg ggcctggcag ttccattctt ccaggaagtt cactgagtgc      1560
     tgccagtagt gatgagttcc aagacttctg gcccaggagg tcttaccggt acgagttggt      1620
     ccgcagatgt acaggcttcg tctccggact ccagggctcc tgacctggtt aggtcagaca      1680
     tccattggag gtcaatacgt gcttgttcct ccgaaatacc tgcatgcaga ctgagggctt      1740
     gaggacttac agtatacagc tcctgctgga gccattctcc tatgaccgga tggtcagaca      1800
     tgtcccttga cgcgtatggc gcggagtagg attgaggagg gtcagggaac agggcatttg      1860
     cactgtattg gaattgctgt aggcgtaccg cccattcgaa agggaaactc tttcgaatca      1920
     tgctcagata ttcgtccctg ttcgtggcat tcgccatgat ttgtttcatg gtcttgtccc      1980
     tagaggccga ctgtgtcgga ctcctgttga ccttaggttt caggaatttc ccaaattccc      2040
     agctactctc aggatgtttc atacagtatt tcagagtatt ggttggctgc cttgcagctt      2100
     gaatgtttgg atgaaattcg tcgaggtcaa agtatttggg agaggtggtt ctgaaatttg      2160
     cttcgagctg gacgaaggca tgtaagtggg gctcaccgtc agcatggaat tccctggaaa      2220
     tgtaaatata attacatttc ttatttttca ggccctcagc aattttctga ccagcctctt      2280
     cgggactgat aggacaccta ggataggtca ggaagacatg tttagtcctc agggagaagg      2340
     ccttctcccc aggcgtcact tgccctccgc gagatggcac ttgtacggaa gtgccacttc      2400
     cctccccttc gctctcactg acaggcaggg acgacataat aaaagacgac gtggcttgat      2460
     ggacagccgt aggatctgtt ctgagatgtg gactcggagc aaaactatct ctaataccag      2520
     ttgcccacct gccgagtgcc ctcttcggct tttatgggcc taacaggccg gctctttgca      2580
     tgggcggggg ggcaaccata atattaccgc ccccccggcc catgcgaggg cccatgctca      2640
     acgggtcccg agcggctttg gctttcactt gggcttgtcc cccgcgatgc gatctgccct      2700
     gccaagcttt ggcggcttta taaagccgtt ctcagacctt cgttttcca                  2749
//