ID   JQ948058; SV 1; circular; genomic DNA; STD; VRL; 2749 BP.
XX
AC   JQ948058;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   14-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Chloris striate mosaic virus isolate AU-1650-2004, complete genome.
XX
KW   .
XX
OS   Chloris striate mosaic virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2749
RX   DOI; 10.1016/j.virusres.2012.07.018.
RX   PUBMED; 22841490.
RA   Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA   Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA   Martin D.P., Varsani A.;
RT   "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL   Virus Res. 169(1):127-136(2012).
XX
RN   [2]
RP   1-2749
RA   Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA   Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT   ;
RL   Submitted (17-APR-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; c7befaeb9da75706bd97db5886550a43.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Coverage              :: 100
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2749
FT                   /organism="Chloris striate mosaic virus"
FT                   /host="Chloris gayana"
FT                   /isolate="AU-1650-2004"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="27.33 S 152.77 E"
FT                   /collection_date="2004"
FT                   /note="genotype: CSMV-A3"
FT                   /db_xref="taxon:10820"
FT   CDS             1..342
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:J7FG48"
FT                   /db_xref="UniProtKB/TrEMBL:J7FG48"
FT                   /protein_id="AFN80685.1"
FT                   /translation="MQYQGYEQLSRSGSVEQASPGASFAFPVKVTALVCFAAIVGACIL
FT                   VFLYKTCIADCITQYRLTDYGCHTSAGFGGALPVTSAQASAAPSTPVCVPCAPQVQASV
FT                   DLPSVSRVS"
FT   CDS             339..1064
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:J7FHB7"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHB7"
FT                   /protein_id="AFN80686.1"
FT                   /translation="MSPASSWKRKRPSSSSAQASKKRRVYRPAVSRSLARREPLQVQDF
FT                   VWDTDVAFNRGGGCYLLTSYARGSAENQRKTAETITYKVAVNLGCAISGTMQQYCISSR
FT                   PVCWIVYDAAPTGSAVTPKDIFGYPEGLVNWPTTWKVARAVSHRFIVKRRWVFTMESNG
FT                   SRFDRDYTNLPAAIPQSLPVLNKFAKQLGVRTEWKNAEGGDFGDIKSGALYLVMAPANG
FT                   AVFVVRGNVRVYFKSVGNQ"
FT   CDS             complement(join(1263..1664,1751..2437))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:J7FHM3"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHM3"
FT                   /protein_id="AFN80688.1"
FT                   /translation="MSSLPVSESEGEGSGTSVQVPSRGWQVTPGEKAFSLRTKHVFLTY
FT                   PRCPISPEEAGQKIAERLKNKKCNYIYISREFHADGEPHLHAFVQLESNFRTTSPKYFD
FT                   LNEFHPNIQAARQPSSTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN
FT                   ATTRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW
FT                   LQQELYTVRSPGVRRRSLYICGPTRTGKTSWARSLGTHHYWQHSVNFLEEWNCQAQFNI
FT                   IDDIPFKFVPCWKGLVGSQYDLTVNPKYGKKKRIPNGIPCIILVNEDEDWLQSMSTQQV
FT                   DWFHGNAVVYHLLPGETFIPSE"
FT   CDS             complement(1550..2437)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:J7FGI3"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGI3"
FT                   /protein_id="AFN80687.1"
FT                   /translation="MSSLPVSESEGEGSGTSVQVPSRGWQVTPGEKAFSLRTKHVFLTY
FT                   PRCPISPEEAGQKIAERLKNKKCNYIYISREFHADGEPHLHAFVQLESNFRTTSPKYFD
FT                   LNEFHPNIQAARQPSSTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN
FT                   ATTRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW
FT                   LQQELYTVSPQALSLHAGISEEQARIDLQWMSDLTRSGALESGDEACTSVGQQELERLL
FT                   GPEVLELITTGSTQ"
XX
SQ   Sequence 2749 BP; 587 A; 712 C; 753 G; 697 T; 0 other;
     atgcagtacc aggggtacga gcagctcagt agatctggat ccgtggagca agccagcccc        60
     ggtgctagct ttgctttccc ggtgaaggtg acagccctcg tctgtttcgc agcgattgtt       120
     ggagcctgta ttcttgtatt cttgtacaag acgtgcattg cggactgcat aacgcagtac       180
     cggcttacgg actacggctg tcacacttcg gctgggttcg gaggtgcgtt acccgtgacc       240
     tctgcgcaag ctagtgctgc tcccagcacc cctgtgtgtg ttccctgtgc tcctcaggta       300
     caggcgtccg tggatctacc ctcagtcagt agggtatcat gagtcctgcc agctcatgga       360
     agaggaagag gccctcttct tcctctgctc aggcgtctaa gaagcgccgc gtctacaggc       420
     ctgctgtttc acgttctctc gctcgtcgag aacctttgca ggtgcaagac tttgtctggg       480
     atactgatgt tgctttcaac aggggaggag gttgctacct tctcaccagc tatgctcgag       540
     gctctgccga gaatcagcgg aagaccgctg agaccatcac gtacaaggtg gcagttaacc       600
     tggggtgtgc tatctccggg acgatgcagc aatattgcat cagctcccga ccggtctgct       660
     ggatcgtata cgacgcggcc ccaacaggct ctgctgttac cccgaaggac attttcgggt       720
     acccggaagg attagttaac tggcctacta cttggaaggt ggccagagcg gtgtcccacc       780
     gcttcatagt gaagcgccga tgggtcttca ccatggagtc caacggctcg cgcttcgacc       840
     gtgattacac caacctcccg gctgctatac cgcagtccct tcccgttctg aacaagttcg       900
     cgaagcagtt gggcgtgcgg acggagtgga agaacgctga aggcggagac ttcggcgaca       960
     taaagagcgg agctctttac ctagtcatgg ctccggctaa cggagctgtc tttgtagtcc      1020
     gcggcaatgt ccgcgtgtat tttaagtctg ttgggaatca gtgattctcc agacttcatt      1080
     ttcaataaac tgtgagagtt tgcttgccaa acaacataat ttcattcata acgatggcgc      1140
     agtatgcgca atacatttaa aagaagggcg gacaggacaa aggcgggcgg ctaagggaag      1200
     ccgcaagggg caacaccaca tcccaagaat gagttttgga atatgcagcc gccggcttta      1260
     cgctattccg aaggaatgaa ggtttcccct gggagaaggt gatacaccac ggcgttgccg      1320
     tgaaaccagt cgacctgttg ggtcgacatc gactgcagcc agtcttcatc ctcgtttacg      1380
     aggataatac atggaatccc gttggggatt cttttcttct tcccgtactt ggggtttaca      1440
     gtcaggtcat actggctgcc gacgagtccc ttccaacaag ggacgaactt gaacgggatg      1500
     tcatcaatga tgttgaactg ggcctggcag ttccattcct ctaggaagtt cactgagtgc      1560
     tgccagtagt gatgagttcc aagacttctg gcccaagaag tctttccagt tcttgttggc      1620
     ccacagatgt acaggcttcg tctccggact ccagggctcc tgacctggtt aggtcagaca      1680
     tccattggag gtcaatacgt gcttgttcct ccgaaatacc tgcatgcaga ctgagggctt      1740
     gaggacttac agtatacagc tcctgctgga gccattcacc tatgaccgga tggtcagaca      1800
     tgtcccttga cgcgtatggc gcggagtagg tttgaggagg gtcagggaac agggcatttg      1860
     cactgtattg gaattgctgt aggcgtaccg cccattcgaa agggaaactc tttcgaacca      1920
     tgctcagata ttcgtccctg gtcgtggcat ttgccatgat ttgtttcatg gtcttgtccc      1980
     tagaggccga ctgggtcgga ctcctgttga ccttaggttt caggaatttc ccaaattccc      2040
     agctactctc tggatgtttc atacagtatt tcagagtact ggagggctgt cttgcagctt      2100
     ggatgtttgg atgaaattca ttcaggtcaa agtatttggg agaggtggtt ctgaaatttg      2160
     attcgagctg gacgaaggca tgtaagtggg gctcaccgtc agcatggaat tccctggaaa      2220
     tgtaaatata attacatttc ttatttttca ggcgctcagc aattttctga ccagcctctt      2280
     cgggactgat aggacacctg ggataggtga ggaagacatg tttagtcctc agggagaagg      2340
     ccttctcccc aggcgtcact tgccatccgc gagatggcac ttgtacggaa gtgccacttc      2400
     cctccccctc gctctcactg acaggcaggg acgacataat aaaagacgac gtggcttgat      2460
     ggacagccgt aggatgtgtt ctgagatgtg gactccgagc aaaactatct ctaataccag      2520
     ttgcccacct gccgagtgcc ctcttcggct tttataggcc taacaggccg gctctttgca      2580
     tgggcggggg ggcaaccata atattaccgc ccccccggcc catgcgaggg cccatgctca      2640
     acgggtcccg agcggctttg gctttcacat gggcttgtcc cctgcgttgc gatctgccct      2700
     gccaagcttt ggcggcttta taaagccgtt ctcagacctt tggtttcca                  2749
//