ID JQ948057; SV 1; circular; genomic DNA; STD; VRL; 2749 BP. XX AC JQ948057; XX DT 26-AUG-2012 (Rel. 113, Created) DT 14-OCT-2012 (Rel. 114, Last updated, Version 2) XX DE Chloris striate mosaic virus isolate AU-1658-2004, complete genome. XX KW . XX OS Chloris striate mosaic virus OC Viruses; Geminiviridae; Mastrevirus. XX RN [1] RP 1-2749 RX DOI; 10.1016/j.virusres.2012.07.018. RX PUBMED; 22841490. RA Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D., RA Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A., RA Martin D.P., Varsani A.; RT "Australian monocot-infecting mastrevirus diversity rivals that in Africa"; RL Virus Res. 169(1):127-136(2012). XX RN [2] RP 1-2749 RA Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J., RA Thomas J.E., Geering A., van Brunschot S., Parmenter K.; RT ; RL Submitted (17-APR-2012) to the INSDC. RL School of Biological Sciences, University of Canterbury, Private bag 4800, RL Christchurch 8140, New Zealand XX DR MD5; 908f2e816e65bfefdf6276f11999bf62. XX CC ##Assembly-Data-START## CC Assembly Method :: DNAMAN v. 5.2.9 CC Coverage :: 100 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2749 FT /organism="Chloris striate mosaic virus" FT /host="Paspalum dilatatum" FT /isolate="AU-1658-2004" FT /mol_type="genomic DNA" FT /country="Australia" FT /lat_lon="27.78 S 152.73 E" FT /collection_date="2004" FT /note="genotype: CSMV-A2" FT /db_xref="taxon:10820" FT CDS 1..342 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:J7FHM0" FT /db_xref="UniProtKB/TrEMBL:J7FHM0" FT /protein_id="AFN80681.1" FT /translation="MQYQGYEQLSRSGSVEQPSPGASFAFPVKVTALVCFAAIVGACIL FT VFLYKTCIADCITQYRLTDYGCHTSAGFGGALPVTSAQASAGTSTPVCVPCAPQVQASV FT DLPSVSRVS" FT CDS 339..1064 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:J7FHM1" FT /db_xref="InterPro:IPR000143" FT /db_xref="InterPro:IPR000263" FT /db_xref="UniProtKB/TrEMBL:J7FHM1" FT /protein_id="AFN80682.1" FT /translation="MSPASSWKRKRPSSSSAQASKKRRVYRPAVSRSLARREPLQVQDF FT VWDTDVAFNRGGGCYLLTSYARGSAENQRKTAETITYKVAVNLGCAISGTMQQYCISSR FT PVCWIVYDAAPTGSAVTPKDIFGYPEGLVNWPTTWKVARAVSHRFIVKRRWVFTMESNG FT SRFDRDYTNLPAAIPQSLPVLNKFAKQLGVRTEWKNAEGGDFGDIKSGALYLVMAPANG FT AVFVARGNVRVYFKSVGNQ" FT CDS complement(join(1263..1664,1751..2437)) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7FGY0" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FGY0" FT /protein_id="AFN80684.1" FT /translation="MSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTY FT PRCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFD FT LDEFHPNIQAARQPASTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN FT ATSRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW FT LQQELYTVRSPGVRRRSLYICGPIRTGKTTWARSLGTHHYWQHSVNFLEEWNCQAQFNI FT IDDIPFKFVPCWKGLVGSQYDLTVNPKYGKKKRIPNGIPCIILVNEDEDWLQSMSTQQV FT DWFHGNAVVYHLLPGETFIPSE" FT CDS complement(1550..2437) FT /codon_start=1 FT /product="RepA" FT /db_xref="GOA:J7FHM2" FT /db_xref="InterPro:IPR001146" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7FHM2" FT /protein_id="AFN80683.1" FT /translation="MSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTY FT PRCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFD FT LDEFHPNIQAARQPASTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN FT ATSRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW FT LQQELYTVSPQALSLHAGISEEQARIDLQWMSDLTRSGALESGDEACTSADQFVPERQL FT GPEVLELITTGSTQ" XX SQ Sequence 2749 BP; 582 A; 720 C; 755 G; 692 T; 0 other; atgcagtacc aggggtacga gcagctcagt agatctggat ccgtggagca acccagcccc 60 ggtgctagct ttgctttccc ggtgaaggtg acagccctcg tctgtttcgc agcgattgtt 120 ggagcctgta ttcttgtatt cttgtacaag acgtgcattg cggactgcat aacgcagtac 180 cggcttacgg actacggctg tcacacttcg gctgggttcg gaggtgcgtt acccgtgacc 240 tctgcgcaag ctagtgctgg taccagcacc cctgtgtgtg ttccctgtgc tcctcaggta 300 caggcgtccg tggatctacc ctccgtaagt agggtgtcat gagtcctgcc agctcatgga 360 agaggaagag gccctcttct tcctccgctc aggcgtctaa gaagcgccgc gtgtacaggc 420 ctgctgtttc acgttctctc gctcggcgag aacctctgca ggtgcaagac tttgtctggg 480 atacagatgt ggctttcaat aggggaggag gatgctacct cctcaccagc tatgctcgag 540 gctctgccga gaatcagcgg aagaccgctg agaccatcac gtacaaggtg gcagttaacc 600 tggggtgtgc tatctccggg acgatgcagc aatattgcat cagctcccga ccggtctgct 660 ggattgtata cgacgcggcc cccactggct ctgctgttac cccgaaggac atcttcgggt 720 acccggaagg attagttaac tggcctacta cttggaaggt ggccagagcg gtgtcccacc 780 gcttcatagt gaagcgccga tgggtcttca ccatggagtc caacggctcg cgcttcgacc 840 gtgactacac caacctcccg gctgctatac cgcagtccct tcccgttctg aacaagttcg 900 cgaagcagtt gggcgtgcgg accgagtgga agaacgctga aggcggagac ttcggcgaca 960 taaagagcgg agctctttac ctagtcatgg ctccggctaa cggagctgtc tttgtagccc 1020 gcggcaatgt ccgcgtgtat tttaagtctg ttgggaatca gtgattcccc agacttcatt 1080 ttcaataaac tgtgagagtt tgcttgccaa acaacataat ttcattcata acgatggcgc 1140 agtatgcgca atacatttaa aagaagggcg gacaggacaa aggcgggcgg ctaagggaag 1200 ccgcaagggg caacaccaca tcccaagaat gagttttcga atatgcagcc gctggcttca 1260 cgctattccg aaggaatgaa ggtttcccct gggagaaggt gatacaccac ggcgttgccg 1320 tgaaaccagt cgacctgttg ggtcgacatc gactgcagcc agtcttcatc ctcgtttacg 1380 aggataatac atggaatccc gttggggatt cttttcttct tcccgtactt ggggtttacc 1440 gtcaggtcat actggctgcc gacgagtccc ttccaacaag ggacgaactt gaacgggatg 1500 tcatcaatga tgttgaactg ggcctggcag ttccattcct ctaggaagtt cactgagtgc 1560 tgccagtagt gatgagttcc aagacttctg gcccaagttg tctttccggt acgaattggt 1620 ccgcagatgt acaggcttcg tctccggact ccagggctcc tgacctggtt aggtcagaca 1680 tccattggag gtcaatacgt gcttgttcct ccgaaatacc tgcatgcaga ctgagggctt 1740 gaggacttac agtatacagc tcctgctgga gccattctcc tatgaccgga tggtcggaca 1800 tgtcccttga cgcgtatggc gcggagtagg tttgaggagg gtcagggaac agggcatttg 1860 cactgtattg gaattgctgt aggcgtaccg cccattcgaa agggaaactc tttcgaacca 1920 tgctcagata ttcgtccctg gacgtggcgt ttgccatgat ttgtttcatg gtcttgtccc 1980 tagaggccga ctgggtcgga ctcctgttga ccttgggttt caggaatttt ccaaattccc 2040 agctactctc aggatgtttc atacagtatt tcagagtact ggctggctgc cttgcagctt 2100 ggatatttgg atgaaattca tccaggtcaa agtattttgg agaggtggtt ctgaaatttg 2160 cttcgagttg gacgaaggca tgtaagtggg gctcaccgtc agcatggaat tccctggaaa 2220 tgtaaatata attacatttc ttatttttta gacggtcagc aattttctga ccagcctctt 2280 cgggactgat aggacacctg ggataggtga ggaagacatg tttagtcctc agggagaagg 2340 ccttctcccc aggcgtcact tgccctccgc gagatggcac ttgtacggaa gtgccacttc 2400 cctccccctc gctctcactg acaggcaggg acgacataat aaaagacgac gtggcttgat 2460 ggacagccgt aggatttgtt ctgagatgtg gactccgagc aaaactatct ctaataccag 2520 ttgcccacct gccgagtgcc ctcttcggct tttataggcc taacaggccg gctctttgca 2580 tgggcggggg ggcaaccata atattaccgc ccccccggcc catgcgaggg cccatgctca 2640 acgggtcccg agcggctttg gctttcacat gggcttgtcc cccgcgatgc gatctgccct 2700 gccatgcttt ggcggcttta taaagccgtt ctcagacctt tgttttcca 2749 //