ID   JQ948053; SV 1; circular; genomic DNA; STD; VRL; 2749 BP.
XX
AC   JQ948053;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   14-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Chloris striate mosaic virus isolate AU-2935-2011, complete genome.
XX
KW   .
XX
OS   Chloris striate mosaic virus
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2749
RX   DOI; 10.1016/j.virusres.2012.07.018.
RX   PUBMED; 22841490.
RA   Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA   Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA   Martin D.P., Varsani A.;
RT   "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL   Virus Res. 169(1):127-136(2012).
XX
RN   [2]
RP   1-2749
RA   Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA   Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT   ;
RL   Submitted (17-APR-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 0cb464f8ae2ba41d26a642c3614d3c75.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Coverage              :: 100
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2749
FT                   /organism="Chloris striate mosaic virus"
FT                   /host="Chloris gayana"
FT                   /isolate="AU-2935-2011"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="17.22 S 145.48 E"
FT                   /collection_date="2011"
FT                   /note="genotype: CSMV-A1"
FT                   /db_xref="taxon:10820"
FT   CDS             1..342
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:J7FGH5"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGH5"
FT                   /protein_id="AFN80667.1"
FT                   /translation="MQYQGYDQLSRSGSVEQTSPGASFAFPVKVTALVCFAAIVGACIL
FT                   VFLYKTCIADCITQYRLTDYGCHSSAGFGGALPVTSAQASAATSTPVCVPCAPQVQASV
FT                   DPPSVSRVS"
FT   misc_feature    487..1064
FT                   /note="similar to capsid protein"
FT   CDS             complement(join(1263..1664,1751..2437))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:J7FGX7"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGX7"
FT                   /protein_id="AFN80669.1"
FT                   /translation="MSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTY
FT                   ARCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFD
FT                   LGEFHPNIQAARQPASTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN
FT                   ATNRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW
FT                   LQQELYTVRSPGVRRRSLYICGPIRTGKTTWARSLGTHHYWQHSVNFLEEWNCQAQFNI
FT                   IDDIPFKFVPCWKGLVGSQYDLTVNPKYGKKKRIPNGIPCIILVNEDEDWLTSMSTQQV
FT                   DWFHGNAVVYHLLPGETFIPSE"
FT   CDS             complement(1550..2437)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:J7FHL9"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHL9"
FT                   /protein_id="AFN80668.1"
FT                   /translation="MSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTY
FT                   ARCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFD
FT                   LGEFHPNIQAARQPASTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMAN
FT                   ATNRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEW
FT                   LQQELYTVSPQALSLHAGISEEQARIDLQWMSDLTRSGALESGEEACTSADQFVPVRPP
FT                   GPEVLELITTGSTQ"
XX
SQ   Sequence 2749 BP; 585 A; 720 C; 754 G; 690 T; 0 other;
     atgcagtacc aggggtacga ccagctcagt agatctggat ccgtggagca aaccagcccc        60
     ggtgctagct ttgctttccc ggtgaaggtg acagccctcg tctgtttcgc agcgattgtt       120
     ggagcctgta ttcttgtatt cttgtacaag acgtgcattg cggactgcat aacgcagtac       180
     cggcttacgg actacggctg tcactcttcg gctgggttcg gaggtgcgtt acccgtgacc       240
     tctgcgcaag ctagtgctgc taccagcacc cctgtgtgtg ttccctgtgc tcctcaggta       300
     caggcgtccg tggatccacc ctctgtaagt agggtgtcat gagtcctgct agctcatgga       360
     agaggaagag gccctcttct tcctctgctc aggcgtctaa gaagcgccgc gtgtacaggc       420
     ctgctgtttc acgttctctc gcacggcgag aacctctgca ggtgcaagac tttgtctggg       480
     atacagatgt ggctttcaac aggggtggag gttgctacct cctcaccagc tatgctcgag       540
     gctctgccga gaatcagcgg aagaccgctg agaccatcac gtacaaggtg gcagttaacc       600
     tggggtgtgc tatctccggg acgatgcagc aatattgcat cagctcccga ccggtctgct       660
     ggcttgtgta tgatgcgtcc ccaacaggct ctgctgttac cccgaaggac atcttcgggt       720
     acccggaagg attagttaac tggcctacta cttggaaggt ggccagagcg gtgtcccacc       780
     gcttcatagt gaagcgccgc tgggtcttca ccatggagtc caacggctcg cgcttcgacc       840
     gtgactacac caacctcccg gctgctatac cgcagtccct tcccgttctg aacaagttcg       900
     cgaagcagtt gggcgtgcgg acggagtgga agaacgctga aggcggagac ttcggcgaca       960
     taaagagcgg agctctttac ctagtcatgg ctccggctaa cggagctgtc tttgtagctc      1020
     gcggcaatgt ccgcgtgtat tttaagtctg ttgggaatca gtgattcccc agacttcatt      1080
     ttcaataaac tgtgagagtt tgcttgccaa acaacataat ttcattcata acgatggcgc      1140
     agtatgcgca atacatttaa agaaagggcg gacaggacaa aggcgggcgg ctaagggaag      1200
     ccgcaagggg caacacaaca tcccaagaat gagttttgga atatgcagcc gccggcttca      1260
     cgctattccg aaggaatgaa ggtctcccct gggagaaggt gatacaccac ggcgttgccg      1320
     tgaaaccagt cgacctgttg ggtcgacata gacgtcagcc agtcctcatc ctcgtttacg      1380
     aggataatac acggaatccc gttggggatt ctttttttct tcccgtactt ggggttaacc      1440
     gtaaggtcat actggctgcc gactagtccc ttccaacaag ggacgaactt gaacgggatg      1500
     tcatcaatga tgttgaactg ggcctggcag ttccattcct ccaggaagtt cactgagtgc      1560
     tgccagtagt gatgagttcc aagacttctg gcccaggtgg tcttaccggt acgaattggt      1620
     ccgcagatgt acaggcttct tctccggact ccagggctcc tgacctggtt aggtcagaca      1680
     tccattggag gtcaatacgt gcttgttcct ccgaaatacc tgcatgaaga ctgagggctt      1740
     gaggacttac agtatacagc tcctgctgga gccattcacc tatgaccgga tggtcagaca      1800
     tgtcccttga cgcgtatggc gcggagtagg tttgaggagg gtcagggaac agggcatttg      1860
     cactgtattg gaattgctgt aggcgtaccg cccattcgaa agggaaactc tttcgaacca      1920
     tgctcagata ttcgtccctg ttcgtggcat tcgccatgat ttgtttcatg gtcttgtccc      1980
     tagaggccga ctgggtcgga ctcctgttga ccttgggttt caggaatttc ccaaattccc      2040
     agctactctc tggatgtttc atacagtatt tcagagtact ggctggctgc cttgcagctt      2100
     ggatgtttgg atgaaattca cccaggtcaa agtatttagg agaggtggtt ctgaaatttg      2160
     cttcgagctg gacgaaggca tgtaagtggg gctcaccgtc agcatggaat tccctggaaa      2220
     tgtaaatata attacatttc ttatttttta ggcggtcagc aattttctga ccagcctctt      2280
     cgggactgat aggacacctg gcataggtga ggaagacatg tttagtcctc agggagaaag      2340
     ccttctcccc aggcgtcact tgccctccgc gagatggcac ttgtacggaa gtgccacttc      2400
     cctccccctc gctctcactg acaggcaggg acgacataat aaaagacgac gtggcttgat      2460
     ggacagccgt aggatttgtt ctgagatgtg gactccgagc aaaactatct ctaataccag      2520
     ttgcccacct gccgagtgcc ctcttcggct tttataggcc taacaggccg gctctttgca      2580
     tgggcggggg ggcaaccata atattaccgc ccccccggcc catgcgaggg cccatgctca      2640
     acgggtcccg agcggctttg gctttcacct gggattgtcc cctgcggtgc gatctgccct      2700
     gccatgcttt ggcggcttta taaagccgtt ctcagacctt tggtttcca                  2749
//