ID   JQ948052; SV 1; circular; genomic DNA; STD; VRL; 2716 BP.
XX
AC   JQ948052;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   14-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Sporobolus striate mosaic virus 2 isolate AU-3020_2-2011, complete genome.
XX
KW   .
XX
OS   Sporobolus striate mosaic virus 2
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2716
RX   DOI; 10.1016/j.virusres.2012.07.018.
RX   PUBMED; 22841490.
RA   Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA   Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA   Martin D.P., Varsani A.;
RT   "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL   Virus Res. 169(1):127-136(2012).
XX
RN   [2]
RP   1-2716
RA   Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA   Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT   ;
RL   Submitted (17-APR-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 82d26a6222948b5dc0c597d5fb85b4ae.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Coverage              :: 100
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2716
FT                   /organism="Sporobolus striate mosaic virus 2"
FT                   /host="Sporobolus sp."
FT                   /isolate="AU-3020_2-2011"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="28.18 S 150.66 E"
FT                   /collection_date="2011"
FT                   /db_xref="taxon:1302850"
FT   CDS             1..303
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:J7FGJ8"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGJ8"
FT                   /protein_id="AFN80717.1"
FT                   /translation="MSNPATPLGDYTSSQHQGGTQSGSVGIGNDSAWRALALAFTVTTV
FT                   TLVLLFGAWRLCLKDCLLTLRAKRSKTTTELGFGQTPRRDPVGGGVTQYPPGVPG"
FT   CDS             355..1095
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:J7FHN2"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHN2"
FT                   /protein_id="AFN80718.1"
FT                   /translation="MPPPAKKKKGSDSGAGGSRSVYQRRYYGPRSSSGRAVRRPPLQFI
FT                   QYTWTSNGSPITVGPNGYVALLTSFPRGSDEDKRHTGETVTYKVGLDLFCVRDTNRYKE
FT                   IGSAIHCCWLVYDAQPTGTIPGLGTIFDLVDNFTEYPTTWKVNRDMGHRFVIKRRWTFT
FT                   LQSDGHLGSNDYSRAPAAPCKYMIAFNKFVKRLGVRTEWRNTTTGDIGDVSRGALYIVM
FT                   ARGNAWSYEVRGRIRVYFKSVGNQ"
FT   CDS             complement(join(1259..1666,1744..2376))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:J7FG59"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="InterPro:IPR027417"
FT                   /db_xref="UniProtKB/TrEMBL:J7FG59"
FT                   /protein_id="AFN80720.1"
FT                   /translation="MSSQSNSTEASPANFRFRARSAFLTYPKCTLEPRDVVEHLYSKFR
FT                   KYGPKYCLVTREHHSDGDYHLHCLFQLDKAFSTNDSSTFNILDYHPNIQTAKSPTNVRD
FT                   YCLKNPVSKAERGTFIPLKGRTPKNTESKAKDSVMRSIINTSTDRASYLSMVRKAFPFD
FT                   WATKLQQFEYSASKLFPDVIPEYTSPFPTENLMCNERITDWLDNTLYQSADHPRTRKSG
FT                   LYICGPNRTGKTSWARSLGKHNYWQMNLDFANYNNEAQYNVIDDIPFKFCPYWKALVGS
FT                   QHEYTVNPKYGKKKLIKGGIPSIILVNEDDDWMRAMNDGQRSYFEGNMSIYYMSEGESF
FT                   IRNEAL"
FT   CDS             complement(1579..2376)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:J7FGY7"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGY7"
FT                   /protein_id="AFN80719.1"
FT                   /translation="MSSQSNSTEASPANFRFRARSAFLTYPKCTLEPRDVVEHLYSKFR
FT                   KYGPKYCLVTREHHSDGDYHLHCLFQLDKAFSTNDSSTFNILDYHPNIQTAKSPTNVRD
FT                   YCLKNPVSKAERGTFIPLKGRTPKNTESKAKDSVMRSIINTSTDRASYLSMVRKAFPFD
FT                   WATKLQQFEYSASKLFPDVIPEYTSPFPTENLMCNERITDWLDNTLYQVSPAAYSSLHP
FT                   QADASGDLNWLMDASLQTIQELGNLGSTSADQIVPVRHLGPGV"
XX
SQ   Sequence 2716 BP; 676 A; 616 C; 747 G; 677 T; 0 other;
     atgtctaatc cggcaacccc tttgggtgat tacacctcaa gtcagcatca gggtggtacg        60
     cagtccggat ccgtcggaat cggtaacgat tccgcgtgga gggcgctagc tcttgctttc       120
     accgtaacta cggtaactct tgttttgctg ttcggagctt ggaggctttg tctgaaagac       180
     tgccttctga ctctgcgggc taaacgcagc aagactacga ccgaactagg attcggtcag       240
     acgccgagaa gggatccggt aggcggagga gtcacccagt acccccccgg agtccctggg       300
     taaccaggat caccgccgta aaagacggcc gtgaagcggt ccagagagga cgctatgcct       360
     cctcccgcta agaagaagaa gggttcggac tctggagccg gaggctccag aagcgtatac       420
     cagcgaaggt attacggacc gaggagctca agcggacgag cagtcagacg tcctccgctt       480
     cagttcatcc agtacacctg gacgagcaac ggttctccga taaccgttgg tccgaatggg       540
     tacgtagctc tcctgactag cttcccaagg ggaagcgacg aagataagcg tcatacagga       600
     gagactgtga cgtacaaggt aggcttggat ctgttctgcg tcagagacac aaacagatac       660
     aaggagatag gatctgctat ccactgctgc tggttggtct acgacgctca accaaccggt       720
     acgattccgg ggctgggaac tatcttcgac ctcgttgata acttcacgga gtacccgacg       780
     acatggaagg taaaccggga tatggggcac cggtttgtga ttaaacgtcg ctggaccttc       840
     acgctccagt cggatggtca cctgggatcg aacgactaca gccgggctcc tgcagcgccc       900
     tgcaagtaca tgattgcgtt caacaagttc gtgaagcgtc taggtgttcg gacggaatgg       960
     aggaacacaa cgacgggtga catcggagac gtgtctaggg gtgcgttgta catcgtaatg      1020
     gctagaggca atgcctggag ttacgaagtt agggggcgta taagagtgta tttcaaatca      1080
     gtcgggaatc agtgatgtaa gaactcctgg cttgtaatga ataagacgtg tttaataaaa      1140
     tgcgtcagta tgacgcttga ttacataaca gcacactcga accgccgccg aggcttaaga      1200
     cgagtcggtg cggttccctg cgatacatga cattaaaaaa agattacatt tatgaaaatt      1260
     acaaagcttc atttctaatg aagctttctc cttccgacat ataatatatc gacatattcc      1320
     cttcaaaata cgaacgctgg ccgtcgttca tggctctcat ccagtcgtcg tcctcgttaa      1380
     ctaggatgat acttggtatt cctcctttga tgagtttttt cttgccgtac tttgggttga      1440
     ctgtatattc atgctgagag ccaaccaagg ccttccaata aggacagaac ttgaacggaa      1500
     tatcatcgat tacattatac tgggcttcgt tattatagtt ggcgaagtcc aggttcatct      1560
     gccagtagtt atgtttacct agactcctgg cccaagatgt cttaccggta cgatttggtc      1620
     cgcagatgta gagcccagat ttcctagttc ttggatggtc tgcagactag catccatcaa      1680
     ccagtttagg tcccccgaag cgtcagcctg cggatgtaaa gaagagtatg cagcaggaga      1740
     tacctggtag agtgtattat cgagccagtc tgtgattctc tcattacaca tgagattttc      1800
     tgtagggaaa gggcttgtgt attccggaat cacgtcaggg aagagctttg acgcggaata      1860
     ttcgaactgc tggagtttag tagcccagtc aaatgggaag gcttttctga ccattgagag      1920
     ataactggct cggtcagttg aagtgttgat gattgagcgc atgactgagt cctttgcttt      1980
     ggactcagtg ttctttggag tcctgccttt gagaggaatg aaggttcctc tctcggcctt      2040
     tgagactgga tttttgagac aatagtctcg gacgtttgta ggagattttg cagtttggat      2100
     gttaggatga taatcaagga tattaaaagt actgctatca ttggtactga atgccttatc      2160
     aagctgaaat agacagtgaa gatggtaatc accgtcgctg tgatgctcac gagtgacgag      2220
     gcagtacttc ggaccgtact tgcggaattt agaatagaga tgttcgacaa catctctagg      2280
     ctccagagtg cacttcggat atgtaagaaa tgcgctacga gctctgaatc tgaagtttgc      2340
     tggggatgct tcggtggagt tgctctgtga agacatgagt gaagtgagta cttagtcgcg      2400
     gaagctactc agctctctct tttagtctac cgggaacgct ttcctttgcc cttacgcggg      2460
     ccgggccgcg tttatataac actcgaaaag gccgaggaac ctttaaatga cgggaccggc      2520
     cggccggccc ggggcggctc gcgggggcaa ggaaagcgaa gcataatatt acccttgccc      2580
     ccgcgggccg tcccgagggc gacgtgtgcg ctctacgtcg cccgagggaa agtgatagag      2640
     aaagaaaggg aatcctttaa ttaaagaaga cttggatagc acgtctcttt aaaagggggt      2700
     gcgctctgag tcggtt                                                      2716
//