ID   JQ948051; SV 1; circular; genomic DNA; STD; VRL; 2789 BP.
XX
AC   JQ948051;
XX
DT   26-AUG-2012 (Rel. 113, Created)
DT   14-OCT-2012 (Rel. 114, Last updated, Version 2)
XX
DE   Sporobolus striate mosaic virus 1 isolate AU-3020_1-2011, complete genome.
XX
KW   .
XX
OS   Sporobolus striate mosaic virus 1
OC   Viruses; Geminiviridae; Mastrevirus.
XX
RN   [1]
RP   1-2789
RX   DOI; 10.1016/j.virusres.2012.07.018.
RX   PUBMED; 22841490.
RA   Kraberger S., Thomas J.E., Geering A.D., Dayaram A., Stainton D.,
RA   Hadfield J., Walters M., Parmenter K.S., van Brunschot S., Collings D.A.,
RA   Martin D.P., Varsani A.;
RT   "Australian monocot-infecting mastrevirus diversity rivals that in Africa";
RL   Virus Res. 169(1):127-136(2012).
XX
RN   [2]
RP   1-2789
RA   Varsani A., Kraberger S., Stainton D., Dayaram A., Hadfield J.,
RA   Thomas J.E., Geering A., van Brunschot S., Parmenter K.;
RT   ;
RL   Submitted (17-APR-2012) to the INSDC.
RL   School of Biological Sciences, University of Canterbury, Private bag 4800,
RL   Christchurch 8140, New Zealand
XX
DR   MD5; 650a6d6d31668c6bb67e9e8fa1b28115.
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNAMAN v. 5.2.9
CC   Coverage              :: 100
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2789
FT                   /organism="Sporobolus striate mosaic virus 1"
FT                   /host="Sporobolus sp."
FT                   /isolate="AU-3020_1-2011"
FT                   /mol_type="genomic DNA"
FT                   /country="Australia"
FT                   /lat_lon="28.18 S 150.66 E"
FT                   /collection_date="2011"
FT                   /db_xref="taxon:1302849"
FT   CDS             1..294
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /db_xref="GOA:J7FHN0"
FT                   /db_xref="InterPro:IPR002621"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHN0"
FT                   /protein_id="AFN80713.1"
FT                   /translation="MEAGHLPSQQGFPSPLAYSQPSPSGVGNDSAWRTLVLVFTITAVG
FT                   LACSFALYRLCVKDLVLLLRAKRSRTVTELGFGGTPARQDGVRTGSGVPGLG"
FT   CDS             489..1127
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /db_xref="GOA:J7FGY6"
FT                   /db_xref="InterPro:IPR000143"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="UniProtKB/TrEMBL:J7FGY6"
FT                   /protein_id="AFN80714.1"
FT                   /translation="MRPVRPFVAVMKYTWTPNGAGVQVAAPGAVYLMTNLPRGSSEDQR
FT                   HTGETLAYKLGIDLEVQVVSAQFAYANKSTHVMWLVYDAQPSGRLPATSDIFDYVEGFQ
FT                   YIPHVWKVRRDLCHRYIVKRKWMINLETNGASFGVDFSSRPVTAPKYRASFHKFVKRLG
FT                   VRTEWKNSDTGEIGDIQRGALYLVVAPGNNVPINIRGYFRLYFKSVGNQ"
FT   CDS             complement(join(1263..1709,1790..2470))
FT                   /codon_start=1
FT                   /product="Rep"
FT                   /db_xref="GOA:J7FHC3"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FHC3"
FT                   /protein_id="AFN80716.1"
FT                   /translation="MSGPSRPPSPFAISSSDEESVDGFHFRGKNIFLTYSRCEIDPALI
FT                   TDALWDKFSSHKPLYILSVRELHQDSGFHVHCLVQLTDQYRSRDSSFADLGGNHPNIQT
FT                   VRSATKVKEYILKEPVSQSARGKFVAPGGRPPKHTDRRRSDSAVKDERMRYILRTATTR
FT                   DDYLGMVRKSFPFEWATRLAQFEYSASKLFPDITPQYQSQYQTTDLTCHENLLDWYQEN
FT                   LQCYIDGAGRRKSLYICGPTRTGKKSWARVLGRHNYYNMQVDWATYDQEAQYNVIDDIP
FT                   FKFCPHWKALIGCQKDFTVNPKYGKKKLIKGGIPTIILVNEDEDWLADMTPGQVSYFEA
FT                   NVQIHYMTSEESFIPDPALRQRLSLNYYKVCFFLM"
FT   CDS             complement(1631..2470)
FT                   /codon_start=1
FT                   /product="RepA"
FT                   /db_xref="GOA:J7FG57"
FT                   /db_xref="InterPro:IPR001146"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:J7FG57"
FT                   /protein_id="AFN80715.1"
FT                   /translation="MSGPSRPPSPFAISSSDEESVDGFHFRGKNIFLTYSRCEIDPALI
FT                   TDALWDKFSSHKPLYILSVRELHQDSGFHVHCLVQLTDQYRSRDSSFADLGGNHPNIQT
FT                   VRSATKVKEYILKEPVSQSARGKFVAPGGRPPKHTDRRRSDSAVKDERMRYILRTATTR
FT                   DDYLGMVRKSFPFEWATRLAQFEYSASKLFPDITPQYQSQYQTTDLTCHENLLDWYQEN
FT                   LQCYIVSPFAYSCLHPAEDAESDLKWMADVTRTEQGAGNPSTSADQLVPVRNLGPGC"
XX
SQ   Sequence 2789 BP; 629 A; 702 C; 814 G; 644 T; 0 other;
     atggaggcgg gccatcttcc atcgcagcag ggattcccat cgcctttggc ttattcccag        60
     ccgagcccca gcggagtcgg gaacgactcc gcgtggagga cgctcgtcct ggtattcacc       120
     atcaccgcag ttggtctggc gtgttcattt gcgctttacc gtctgtgtgt gaaggacctt       180
     gttctgttgc tgagggcgaa gcgctcaagg acggtgacgg aactggggtt cggcggcacc       240
     ccggcgcgcc aagacggcgt tcgtaccggg agtggggttc ccgggcttgg atagtttcca       300
     ccaggaccgg ttgcttacat acggggactt ccggcgagcg ctcgagctga gccgagccat       360
     gccgtcgtcc acgcgtgctg ctgtgaggcc taagcgtaag agggttggga aacaaccgtg       420
     gcccagagaa ctatggcaga gggggattac cccacgaaac agcaggatcc ggtcgacggg       480
     tctcatcgat gagacccgtt cgccctttcg ttgcagtaat gaagtataca tggacaccca       540
     acggggcagg agttcaggtt gctgcaccgg gtgctgtcta tctcatgacg aacttgcccc       600
     gggggagcag cgaagaccag cgacacacgg gggagacctt ggcttacaag ctgggaatcg       660
     acctagaggt acaggttgtg tcagctcagt ttgcctatgc caacaagagt acccatgtca       720
     tgtggctggt ctatgacgca cagccgagcg gtcgtcttcc ggcgacctct gatatcttcg       780
     actacgttga ggggttccag tatatcccac acgtgtggaa ggtgaggcga gatctgtgcc       840
     accggtacat tgtcaaacgg aagtggatga taaacctcga gaccaatgga gcgtccttcg       900
     gggtggactt cagtagcaga ccggtcactg ctccaaagta ccgggctagc ttccacaagt       960
     tcgttaagcg gttaggcgta cgaactgagt ggaagaactc cgacacgggt gagatcggag      1020
     acatccagag gggagcgttg tacttggtgg ttgctccagg caacaacgtt ccgataaaca      1080
     ttagggggta cttccgtttg tatttcaaga gtgtcggtaa tcagtaggat taccgtcttt      1140
     gtaatcgaag attaataaga agcgaagctt ttattcatat agcgtgcagt gcacagagaa      1200
     attacaacac acacaatcgc agccgaggct taagacgagt ctcagcgatt ccctgcgatc      1260
     atctacatca aaaaaaaaca cactttataa taattcaggc tgagtcgctg gcgtaaagcc      1320
     gggtccggta tgaagctctc ttcagatgtc atgtagtgga tctgcacgtt cgcttcgaag      1380
     tacgacacct gcccgggtgt catatcggct agccagtcct cgtcctcatt caccagtatg      1440
     atagtaggga tacctccctt tatcagtttc ttcttaccat atttaggatt tacagtaaag      1500
     tccttctggc agccgatcag agccttccag tgaggacaga acttgaaggg gatgtcgtcg      1560
     atcacattgt attgggcctc ctggtcgtat gtggcccaat ccacctgcat attgtagtag      1620
     ttatgacgtc ctaacaccct ggcccaagat ttcttaccgg tacgagttgg tccgcagatg      1680
     tagagggatt tccggcgccc tgctccgtcc tagtaacgtc agccatccac tttaaatcag      1740
     attcggcgtc ctcggccgga tgtagacaag agtacgcgaa gggacttacg atgtagcact      1800
     gcaggttctc ctgataccag tccaagaggt tctcatgaca tgtgagatcc gtagtctggt      1860
     actggctctg gtactgggga gtgatgtcag ggaagagctt ggatgcagag tattcgaact      1920
     gggctagtct agtagcccac tcaaacggga aggactttcg gaccatcccg agataatcgt      1980
     cccgggtggt agcggttcgg aggatgtacc gcatgcgctc gtccttgacg gccgagtcgc      2040
     tgcgcctcct atctgtgtgt ttgggaggtc ttccgccagg ggcgacaaac ttccccctgg      2100
     ctgactggct aacaggctct ttgaggatat actctttgac cttagtagcg cttctaactg      2160
     tttggatatt tgggtgattt ccacccaaat cagcaaaaga agagtcgcga gaccgatatt      2220
     gatcagtaag ctgcacaagg caatgaacat ggaagccgga gtcctgatgc agctcacgaa      2280
     cagaaagaat atacagaggc ttatgagacg aaaatttgtc ccagagagca tctgtgatta      2340
     gggctggatc gatctcacac cgggagtagg tgaggaagat gttcttccct cggaagtgga      2400
     atccgtcgac gctctcctcg tcggaggaag agatggcgaa cggggacgga gggcgagagg      2460
     gtccagacat gttctagtcc ttagccgttt tctgggtgtg gagctctcta aaactcctaa      2520
     gacatgcgtc gaaacgtttg cccaggccgt gggcttaaat agatagcggg ccgaaaggca      2580
     cgctgcgagt ggggggcggg atgcgacgtt gatagacgcg cgataatatt accccgcccc      2640
     ccactcgcga gggcgacgtg tgcgctctac gtcgcccgag cgggccggct tttgtactgg      2700
     gccgcatctt ttcccggcct gagtgcgcaa cacgggtgtt cgatcgggac accgcgtctt      2760
     taaagtcaac atctttaggt ccttcgacg                                        2789
//