Dbfetch

Dbfetch

ID   JQ943670; SV 1; linear; genomic RNA; STD; VRL; 711 BP.
XX
AC   JQ943670;
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DT   18-JUN-2012 (Rel. 113, Created)
DT   18-JUN-2012 (Rel. 113, Last updated, Version 1)
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DE   Maize chlorotic mottle virus isolate YN6 coat protein gene, complete cds.
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KW   .
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OS   Maize chlorotic mottle virus
OC   Viruses; Riboviria; Tombusviridae; Procedovirinae; Machlomovirus.
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RN   [1]
RP   1-711
RA   Wang Q., Wu J., Hong J., Zhou X.;
RT   "Phylogenetic analysis of Maize chlorotic mottle virus in China";
RL   Unpublished.
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RN   [2]
RP   1-711
RA   Wang Q., Wu J., Hong J., Zhou X.;
RT   ;
RL   Submitted (18-APR-2012) to the INSDC.
RL   College of Agriculture and Biotechnolog, Zhejiang University, Institute of
RL   Biotechnology, 388, Yu Hang Tang Road, HangZhou, Zhejiang 310058, China
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DR   MD5; 9a09455d7a07209138cb2c4a49a03b08.
DR   EuropePMC; PMC3709059; 23825140.
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CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1..711
FT                   /organism="Maize chlorotic mottle virus"
FT                   /host="Zea mays"
FT                   /isolate="YN6"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yuanjiang, Yunnan"
FT                   /collection_date="May-2010"
FT                   /PCR_primers="fwd_name: 3301-F, fwd_seq:
FT                   acaggacaccgttgccgtttat, rev_name: 4187-R, rev_seq:
FT                   cgatttaggctcccagacactt"
FT                   /db_xref="taxon:12138"
FT   CDS             1..711
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /db_xref="GOA:I6QQC4"
FT                   /db_xref="InterPro:IPR000937"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="PDB:3JB8"
FT                   /db_xref="UniProtKB/TrEMBL:I6QQC4"
FT                   /protein_id="AFM31233.1"
FT                   /translation="MAASSRSTRGRKQRGRSVEAKSRAIRANPPVPRPNPQRNRPPPAG
FT                   TTCSMSEILLAVSATTADQILEIPVCAGIDFPAGTPPRYIGAAKWLAAQSQMWNTIVFN
FT                   SVRITWETFTADTTSGYISMAFLSDYMLSLPTGVEDVARIVPSATIALKNRGPSIVMPQ
FT                   NRTAFRCIQAGQFAALGSAADKQMYSPGRFIVAIPKASATQAVGQIKISYSVSYRGAAI
FT                   LQPALVPGPGLANH"
XX
SQ   Sequence 711 BP; 179 A; 213 C; 177 G; 142 T; 0 other;
     atggcggcaa gtagccggtc tacccgaggt agaaagcagc gcggacgtag cgtggaagca        60
     aaatccagag ctattcgagc caacccgcct gtccctcgac ccaacccgca gcgaaaccgt       120
     cccccacctg cgggaacaac ctgctccatg tccgaaattc tgcttgcagt gtcagcaaca       180
     actgctgacc aaattctcga gattccagtg tgcgcaggga ttgacttccc agctggaacg       240
     ccaccccgat acattggggc ggccaaatgg ctggcagcac aatcacagat gtggaacaca       300
     attgtgttca actctgtgcg catcacttgg gaaacattca cagcagacac cactagcgga       360
     tacatctcca tggcattcct ctctgattac atgctatcac tacccactgg ggtggaggat       420
     gttgccagga tcgtgccctc agctacaata gctctgaaga acagagggcc gtccattgtt       480
     atgccacaaa accgcactgc gttcaggtgc atacaggctg gtcagtttgc tgcgttgggc       540
     agcgcggctg acaagcaaat gtattccccc ggacgattca ttgtggccat ccccaaagct       600
     agtgcaacac aagcggtagg ccaaatcaaa atctcgtact ccgtgtccta ccgtggagca       660
     gcaatcctac aacctgccct ggttccaggc ccagggctgg caaatcattg a                711
//