ID JQ943580; SV 2; linear; genomic RNA; STD; VRL; 2937 BP. XX AC JQ943580; XX DT 19-OCT-2012 (Rel. 114, Created) DT 11-JAN-2013 (Rel. 115, Last updated, Version 2) XX DE Le Blanc nodavirus strain JU1498 capsid protein and delta protein genes, DE complete cds. XX KW . XX OS Le Blanc nodavirus OC Viruses; Riboviria; Nodaviridae; unclassified Nodaviridae. XX RN [1] RP 1-2937 RX DOI; 10.1128/JVI.02025-12. RX PUBMED; 23043172. RA Franz C.J., Zhao G., Felix M.A., Wang D.; RT "Complete genome sequence of le blanc virus, a third caenorhabditis RT nematode-infecting virus"; RL J. Virol. 86(21):11940-11940(2012). XX RN [2] RP 1-2937 RA Franz C.J., Renshaw H.A., Wu G., Zhao G., Felix M.-A., Wang D.; RT ; RL Submitted (16-APR-2012) to the INSDC. RL Molecular Microbiology, Washington University, 4920 Parkview, St. Louis, MO RL 63110, USA XX RN [3] RC Sequence update by submitter RP 1-2937 RA Franz C.J., Renshaw H.A., Wu G., Zhao G., Felix M.-A., Wang D.; RT ; RL Submitted (10-JAN-2013) to the INSDC. RL Molecular Microbiology, Washington University, 4920 Parkview, St. Louis, MO RL 63110, USA XX DR MD5; 96e73be224090212c53796df1cde3c7a. DR EuropePMC; PMC3486331; 23043172. XX CC On Jan 10, 2013 this sequence version replaced gi:408777361. XX FH Key Location/Qualifiers FH FT source 1..2937 FT /organism="Le Blanc nodavirus" FT /segment="RNA2" FT /host="Caenorhabditis briggsae" FT /strain="JU1498" FT /mol_type="genomic RNA" FT /country="France" FT /collected_by="Marie-Anne Felix" FT /collection_date="18-Aug-2008" FT /db_xref="taxon:1241918" FT CDS 236..1285 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="InterPro:IPR024292" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:K4K071" FT /protein_id="AFU90717.1" FT /translation="MTTSNSIILKGCDRIVTVVDASTLSAGDPLVKLMITPDIAYRLGA FT TAKTFQRIKYKTMRFRVNAQCATTTAGGYVAGFVKDAGDELPTGDRAVPYLMSNTGSFT FT QPWWKSTVHNVKLPQKMFYTEKPAVGSDAVREYSPGTFYVVVDSKPSQVCPVTVDLEWA FT VELHDATYREVEAVTTISGISADYSLNVFGIPATSVLAGRILITPKGSNPRPLTIERFR FT TFFGFAPDLMFCVRLPRPEDVVLTGDNVYQGVKATHFMAYTADGLLDFHLAAFNDVTQS FT IIPVRPSDWRVYSVDGSSSTPFTSAIYENTTWSSDDKFVPVTISDVPIPGAVFRFLYPS FT VGYSLPSSN" FT CDS 1405..2601 FT /codon_start=1 FT /product="delta protein" FT /db_xref="UniProtKB/TrEMBL:K4JWE4" FT /protein_id="AFU90718.1" FT /translation="MIASLQAAEIHLGRPTASYEQWFNETIGTTLTKLADNSDRMIELV FT EKLSSCVVDEQLAITTRETLKVEVENKVPVTVENTPRVHVDNEVDVTVKNEALRVRNYM FT LKLEEIEFPEPLFVLGAEKDIEGHPKKFECEVINEPTVKLAGGTSIDTNVVNTVDCNIV FT NEPIVRLADDSHVDAVVTGTVNCNVLNEPTVHLAANSRVDAFVGNTVFTSVVALPEVHV FT GSLPGVDVIALPPVSLSANPLPVTVTGGTLTIDQPVSVIAEVPLEVYMSNEVAVKVIEV FT EGTVDVAVKNRFSDPIPVCQLTRTLVPAPPATNNYSGQGVFRELSQSHPLPMYQVGPDN FT GISHTMGPQNTTFVRDVSEDGYVWSDCQNSRLPDVYKHEFEGEDRRRTVLAVVAEAHS" XX SQ Sequence 2937 BP; 738 A; 771 C; 726 G; 702 T; 0 other; gtaaagcgct aaaggaccca cgtcccagct ttatgagcgt ggcgcactcc tcccatacgg 60 atttatctcg ggagacaggc tatggggttc gcacccccat agtttagccc tgaccgctaa 120 caaacaccgc acacataaat caaaccggag aggaaaaccg gtgaaacaac ctcattctcg 180 ccgttctaac aggaatggaa ataccgcacc agtagcccgt gcaaacccgc tacgtatgac 240 cacgtcgaat tcgatcattc tgaaaggatg cgaccgaatt gtgactgtgg tagacgcttc 300 gactctttca gctggcgacc cgctcgttaa gctgatgatt actcccgata ttgcttaccg 360 tctaggagcg actgcaaaga cgttccaacg gatcaagtac aagaccatga gattcagagt 420 caacgctcaa tgtgccacta cgactgccgg aggttacgtt gccggatttg tgaaggacgc 480 tggagacgaa ctgcctactg gagacagagc agtgccgtat ctcatgtcca acacaggttc 540 atttacccaa ccctggtgga aatcgacggt ccacaacgtt aagttaccac agaagatgtt 600 ctacacggag aaacctgccg taggcagtga cgctgtacgt gaatattccc ctggaacctt 660 ctatgttgtt gtggacagca aacctagtca agtttgtccc gttacagttg atctggaatg 720 ggcagtcgag ctccatgacg caacctaccg tgaagtagaa gcagtcacca ccatttccgg 780 aatctcagct gattactctc tgaacgtttt cggaattcct gccacgtccg tgctcgcagg 840 ccgtattctt attacaccaa agggtagtaa ccctcgtcct ttgaccatag aacgattcag 900 aacattcttc ggctttgcgc ctgatttgat gttctgtgtc cgactaccaa gacctgagga 960 tgttgtcctc acaggggaca atgtctacca aggagtcaaa gcaacacact ttatggccta 1020 cacagcagac ggactcctcg acttccatct cgcagctttc aatgacgtca cccaatcaat 1080 catccctgta agaccctcag actggagggt gtattcggtt gatggatcta gttccacgcc 1140 attcacctcg gccatctatg agaacaccac ttggagttct gacgacaagt tcgtcccagt 1200 taccatttcg gatgtgccaa ttccaggagc cgtgttccgg ttcttgtacc catctgtagg 1260 ttattccctg ccatcgtcaa actaggatgg ggcaacgtcg tgcagctgac ggagcccaat 1320 cttttgtttc gcacatggtt tgagaaccaa cagctggtcc taggacttcc atccgaggat 1380 tatgctactt ggtttgccag ggccatgatt gcctcactgc aagctgctga gatccacctc 1440 ggccgaccaa ccgctagtta tgagcagtgg tttaacgaaa cgattggaac cactttgacc 1500 aaactggccg ataactcgga cagaatgatc gaactggttg agaagctctc ttcatgtgtg 1560 gtcgacgaac agttggccat cactacaagg gagactctca aagtcgaagt ggagaataaa 1620 gtgcctgtaa cagtcgaaaa cacaccgcgt gtccacgtag acaacgaagt cgatgtaaca 1680 gtcaagaacg aagctttaag agtacggaat tacatgctga aacttgagga gatcgagttt 1740 ccagaaccgc tgttcgtact cggagccgag aaggatattg aaggacaccc aaagaaattt 1800 gagtgcgagg tcatcaacga accaactgtt aaactagcag gaggcacctc aatagacacc 1860 aacgttgtta acactgtcga ttgtaacatc gtcaacgagc cgatcgtcag attggctgac 1920 gattcccacg ttgacgcggt cgtgaccggc actgttaact gtaacgttct caatgaaccg 1980 acggtccatt tggccgccaa ctcgcgtgtt gatgctttcg tcggcaacac agttttcact 2040 tctgtggtgg ctctacctga ggttcatgtg gggtccctac caggtgttga cgtgatagca 2100 ttaccaccgg tgtctctttc tgctaatccg ctccccgtca ccgttacagg aggtacgcta 2160 acaatagacc aaccagtgtc tgtaatcgct gaggtcccat tggaggtgta catgagtaat 2220 gaggtcgccg taaaggtgat tgaggttgag gggacagtcg atgtcgcagt caagaatagg 2280 ttcagcgacc ctattccagt ctgtcagctc acacgtactc tagttccagc acccccagcc 2340 acgaataatt attctgggca gggagtgttc cgtgagctct cccagtcgca tccgttgccg 2400 atgtatcagg taggtcctga caacggcatt tcccacacta tgggtccgca gaacactacg 2460 ttcgtgcgcg acgtttcgga agacggatat gtctggtcag actgccagaa tagcaggcta 2520 cccgatgtct ataagcatga gtttgaaggc gaagaccgca ggagaactgt cctcgcggta 2580 gtcgccgagg ctcattctta ggtagcatgt tgttcgacta gttgatactc cttctggtca 2640 gttatcgtcc tacacgtggg taggacgcac catctaggtg gtgatcccgg ttggcaacca 2700 aaatggataa cgggtattca aacacaagaa ttaaacaagg tgtcggccag tcctggtcgt 2760 aatgtagtag gtccgccaaa cctgccacac tggacacgcc tgctagcttg ctagcgaacc 2820 cggtgactcc gaggtattac tggtagcctc tgttcggcat taaatgtcag cgttgtgggg 2880 attcaacgac aaatggtggg tttcgtcaac cctccaggcc aatccctctt gggccgc 2937 //