ID JQ928347; SV 1; circular; genomic DNA; STD; VRL; 2780 BP. XX AC JQ928347; XX DT 03-OCT-2012 (Rel. 114, Created) DT 03-OCT-2012 (Rel. 114, Last updated, Version 1) XX DE Tomato yellow leaf curl virus isolate Cherry-Fadisheh, complete genome. XX KW . XX OS Tomato yellow leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2780 RA Gharouni Kardani S., Jafarpour B., Mehrvar M., Heydarnejad J., Tarighi S., RA Zaki Aghl M.; RT "Genetic diversity of TYLCV in Iran"; RL Unpublished. XX RN [2] RP 1-2780 RA Gharouni Kardani S., Jafarpour B., Mehrvar M., Heydarnejad J., Tarighi S., RA Zaki Aghl M.; RT ; RL Submitted (11-APR-2012) to the INSDC. RL Plant Protection, Ferdowsi University, Azadi Square, Mashhad, Khorasan RL Razavi 9177948978, Iran XX DR MD5; adb0fc5192883635fde9b4ceee9a9f93. XX FH Key Location/Qualifiers FH FT source 1..2780 FT /organism="Tomato yellow leaf curl virus" FT /host="Solanum lycopersicum" FT /isolate="Cherry-Fadisheh" FT /mol_type="genomic DNA" FT /country="Iran:Neyshabur, Fadisheh, Khorasan Razavi FT province" FT /collected_by="Sara Gharouni Kardani" FT /collection_date="22-Dec-2009" FT /clone="Cherry20" FT /db_xref="taxon:10832" FT gene 147..497 FT /gene="V2" FT CDS 147..497 FT /codon_start=1 FT /gene="V2" FT /product="precoat protein" FT /db_xref="GOA:K0DAQ0" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:K0DAQ0" FT /protein_id="AFT83014.1" FT /translation="MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLVRDL FT ISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHV FT SKAQNIQNVSEP" FT gene 307..1083 FT /gene="V1" FT CDS 307..1083 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:I1VX09" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I1VX09" FT /protein_id="AFT83015.1" FT /translation="MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSW FT TYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITH FT RVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDN FT EPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYATMKIRIYFYDSISN" FT gene complement(1080..1484) FT /gene="C3" FT CDS complement(1080..1484) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:I1VX12" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I1VX12" FT /protein_id="AFT83016.1" FT /translation="MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDI FT ISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGRFLRVFSYEVLKYLDSLGVISINN FT VIRAVDHVLYDVLENTINVTETHDIKYKFY" FT gene complement(1225..1632) FT /gene="C2" FT CDS complement(1225..1632) FT /codon_start=1 FT /gene="C2" FT /product="transcription activator protein" FT /db_xref="GOA:I1VX13" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I1VX13" FT /protein_id="AFT83017.1" FT /translation="MQPSSPSTSHCSQVSIKVKHKISKKKTIRRKRVDLDCGCSYYLHL FT NCNNHGFTHRGTHHCSSSREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQ FT HQEGNGDSQMFSQLPNLDDITASDWSFLKSI" FT gene complement(1541..2614) FT /gene="C1" FT CDS complement(1541..2614) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:I1VX11" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I1VX11" FT /protein_id="AFT83018.1" FT /translation="MPRLFKIYAKNYFLTYPNCSLSKEEALSQLLALNTPTNKKFIRVA FT HELHEDGSPHLHVLIQFEGKYQCKNQRFFDLSSPSRSAHFHPNIQAAKSSTDVKTYVEK FT DGDFIDFGIFQIDGRSARGGQQSANDAYAEALNSGRKSEALNILKEKAPKDYILQFHNL FT SSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVMSSAARPWRPNSIIIEGDSR FT TGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQS FT NTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKTWALKNATFVTLYEPLFA FT SINQGQTQDIQEENNKA" FT gene complement(2170..2478) FT /gene="C4" FT CDS complement(2170..2478) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I1VX08" FT /protein_id="AFT83019.1" FT /translation="MNYMKMGLLISMFSSSSKESTSVRTNDSSIYPLQAGQHISIRTFR FT QLRAQQMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAENPRPSIY" XX SQ Sequence 2780 BP; 771 A; 528 C; 611 G; 870 T; 0 other; accggatggc cgcgctcttt tttttatgtg gtccccacga gtgttccgca gaagtcactg 60 tcaaccaatc aaattgcatc ctcaaacgtt agataagtat tgatttgtct atatatactt 120 ggtccccaag tattttgtct tgcaatatgt gggacccact tctaaatgaa tttcctgaat 180 ctgttcacgg atttcgttgt atgttagcta ttaaatattt gcagtccgtt gaggaaactt 240 acgagcccaa tacattgggc cacgatttag ttagggatct tatatctgtt gtaagggccc 300 gtgactatgt cgaagcgacc aggcgatata atcatttcca cgcccgtctc gaaggttcgc 360 cgaaggctga acttcgacag cccatacagc agccgtgctg ctgtccccat tgtccaaggc 420 acaaacaagc gacgatcatg gacgtacagg cccatgtatc gaaagcccag aatatacaga 480 atgtatcgga gccctgatgt tccccgtgga tgtgaaggcc catgtaaagt tcagtcttat 540 gagcaacggg atgatattaa gcatactggt attgttcgtt gtgttagtga tgttactcgt 600 ggatctggaa ttactcacag agtgggtaag aggttctgtg ttaaatcgat atatttttta 660 ggtaaagtct ggatggatga aaatatcaag aagcagaatc acactaatca ggtcatgttc 720 ttcttagtcc gtgatagaag gccctatgga aacagcccaa tggattttgg acaggttttt 780 aatatgttcg ataatgagcc cagtaccgca accgtgaaga atgatttgcg ggataggttt 840 caagtgatga ggaaatttca tgctacagtt attggtgggc cctctggaat gaaggaacag 900 gcattagtta agagattttt taaaattaac agtcatgtaa cttataatca tcaggaggca 960 gccaagtacg agaaccatac tgaaaatgcc ttgttattgt acatggcatg tacgcatgcc 1020 tctaatccag tgtatgcaac tatgaaaata cgcatctatt tctatgattc aatatcaaat 1080 taataaaatt tatattttat atcatgagtt tctgttacat ttattgtgtt ttcaagtaca 1140 tcatataata catgatcaac tgctctgatt acattgttaa tggaaattac accaagacta 1200 tctaaatatt taagaacttc atagctaaat actcttaaga aacgaccagt ctgaggctgt 1260 aatgtcgtcc aaattcggaa gttgagaaaa catttgtgaa tccccattac cttcctgatg 1320 ttgtggttga atcttatctg aatggaaatg atgtcgtggt tcattagaaa tggcctctgg 1380 ctgtgttctg ttatcttgaa atagagggga ttgtttatct cccagataaa aacgccattc 1440 tctgcttgag gagcagtgat gagttcccct gtgcgtgaat ccatgattat tgcagttgag 1500 gtggaggtag tatgagcagc cacagtctag gtctacacgc ttacgcctta ttgttttctt 1560 cttggatatc ttgtgtttga ccttgattga tacttgcgaa cagtggctcg tagagggtga 1620 cgaaggttgc attcttgaga gcccaagttt tcaaggatat gtttttttct tcgtctagat 1680 attccctata tgaggaggta ggtcctggat tgcagaggaa gatagtggga attccccctt 1740 taatttgaat gggctttccg tactttgtgt tgctttgcca gtccctctgg gcccccatga 1800 attccttgaa gtgctttaaa tagtgcgggt ctacgtcatc aatgacgttg taccacgcat 1860 cattactgta cacctttgga cttaggtcta gatgtccgca taaataatta tgtgggccta 1920 gagacctggc ccacattgtt ttgcctgttc tgctatcacc ctcgatgata atactattag 1980 gtctccatgg ccgcgcagcg gaagacatga cgttctctga cacccatact tcaagttcat 2040 ctggaacttg attaaaagat gaagataaaa agggagaaat ataaggagcc ggaggctctt 2100 gaaaaatcct atctaaattt gaacttaaat tatgaaattg taaaatataa tcctttgggg 2160 ccttctcttt caatatattg agggcctcgg attttctgcc tgaattgagt gcttcggcat 2220 atgcgtcgtt ggcagattgc tgacctcctc tagctgatct gccatcgatt tggaaaattc 2280 caaaatcaat gaagtctccg tctttctcca cgtaggtctt gacatctgtt gagctcttag 2340 ctgcctgaat gttcggatgg aaatgtgctg acctgcttgg agaggataaa tcgaagaatc 2400 gttggttctt acactggtac tttccttcga actggatgag aacatggaga tgaggagacc 2460 catcttcatg tagttcatgc gcaactcgta tgaatttctt gttagttggt gtatttaggg 2520 caagtaattg ggaaagtgct tcttctttag agagagaaca attaggataa gtcaggaaat 2580 aatttttggc atatatttta aatagacgag gcatggtgaa atgaatcggt gtccctcaaa 2640 actctatggc aaccggtgta tccggtgtct tacttatacc tagacaccca atggctattt 2700 ggtaatttcg taaaagtaaa tgtaattcaa aattcaaaat tcaaaaatca aatcattaaa 2760 gcggccatcc gtataatatt 2780 //