ID JQ927430; SV 1; linear; genomic RNA; STD; VRL; 3514 BP. XX AC JQ927430; XX DT 03-JUL-2012 (Rel. 113, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate LiaoN08 segment 2, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-3514 RA Huang L., Rao L., Wu J.; RT "Genetic variability and evolution of Rice stripe virus"; RL Unpublished. XX RN [2] RP 1-3514 RA Huang L., Rao L., Wu J.; RT ; RL Submitted (16-APR-2012) to the INSDC. RL State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang RL University, Hangzhou, Zhejiang 310058, China XX DR MD5; 4689150b5a13e39c44f91168ec21f743. XX CC GenBank Accession Numbers JQ927418, JQ927424, JQ927430, JQ927436 CC represent the complete genome of Rice stripe virus isolate LiaoN08. CC CC ##Assembly-Data-START## CC Assembly Method :: SeqMan II v. 5.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3514 FT /organism="Tenuivirus oryzaclavatae" FT /segment="2" FT /host="rice" FT /isolate="LiaoN08" FT /mol_type="genomic RNA" FT /country="China: Liaoning Province" FT /collection_date="01-Jul-2008" FT /db_xref="taxon:3052763" FT CDS 81..680 FT /codon_start=1 FT /product="NS2 protein" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:I6TLP9" FT /protein_id="AFM93797.1" FT /translation="MALLLFNDHYYGFLHKYKRHTGSYDNLFNLRCSKEDHYLNSLDAI FT WLMGCCEEFTDPALRAHALAIATESNIGLVNNNAVISDERLKCWLCKKPSHQQTEHLKL FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFCFPTGLRAYYKPHQKMEHKHIVV FT TNGIPISKNFNEIALPDPSPSEDYVLVGAHECPILM" FT CDS complement(980..3484) FT /codon_start=1 FT /product="NSvc2 protein" FT /db_xref="GOA:I6UG15" FT /db_xref="InterPro:IPR009547" FT /db_xref="UniProtKB/TrEMBL:I6UG15" FT /protein_id="AFM93798.1" FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRNREREPSEIVKVPC FT SARAPPCKLTYELNGYFIENGLICYNRASVNYFETCYTGNYDYKLPLHPSFSKFGGHVY FT LSCDDAILQNVSLVGIQQTEYTSSPLLITNSNSEKISYSNLKTGFLGIVYAVETRACIQ FT PDQAKKPEEIINHGVAIKPSCTDGVLYYINFACEVNVSDQTFSIPSCESVKLPTYDDTI FT EVCDKGGCQNVTCHPGEICDKYERMDMIMRIKNYQCSHIYRYSLYSIILFFVIVIVFTL FT ITIMNILFFLRPAFWLLKKVLYSMVGLCHRRPVVDEVSVDMSTVRVVDEAEEGLLVVED FT SIAPNTNVSDKVKRKGRKVENGLIFIPYILMILLLVCSAESCQDLVSSISNIERCTNNS FT CDFISKMKLTLLNTPQDFCFKTSTDVYKIRFNSVRVMCLSVPLYYTNSFKRVISREEWK FT CFEGEGCRTDGTHSIWGESTSLSFDYCVTDFHIFSYCPAYHYNWKRKEYEPTSSRACTI FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSNYNSARMPREYAECDGKA FT YLRTANDLGSFDKELLGNIQCPTKEDAVVLSNKCKTKILSNEDLPVIRYVERDGVDMLE FT HVKSEPLKDVLVSSSGISLSTLDLFPVELNLQFKEAITSIITSKISLNGTSCKITGIER FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVTVGSMIKCKF FT IYSGDTLMCKYDVSPLEITVISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS FT IIPIGLILKTIRSFLDDIRQVD" XX SQ Sequence 3514 BP; 1067 A; 745 C; 636 G; 1066 T; 0 other; acacaaagtc ctgggtatat aagccacata tatcatataa atctaacaga aatcgtccac 60 ggagaatctc gtcttcagca atggcattac tcctcttcaa tgatcactac tatggttttc 120 tccataagta taaaagacat actggatcat atgataatct cttcaatttg aggtgctcta 180 aagaagacca ctatttgaac tctcttgatg ccatctggct catgggatgc tgtgaggagt 240 tcacagatcc agctcttaga gcacatgctc tcgccatagc aactgaatct aacataggtt 300 tggttaacaa taatgccgtg atatctgatg agaggctgaa atgctggctc tgtaaaaaac 360 catctcatca acagactgag catctgaaac tgatcctgtt acccaacttg gtcaacgggt 420 ttcagtttgc tacagagtca tatcacatat gcctgaagga tcactctgga gatgacccta 480 cacaatatct tagtgagttc tgctttccca cagggttaag agcctactac aagccacatc 540 agaagatgga gcataaacat atagttgtaa ccaatggaat acccatctcg aagaatttca 600 acgaaattgc tctccctgac ccatctccta gtgaagacta tgtcttggtt ggagcacatg 660 agtgccctat tctaatgtga acttggaaga tgatattgac tgtggcctac aggcacatac 720 acacactggc tacaaacact acaatggtgc tatgcatcaa tttataatct tatatcctcg 780 aaatggtgct acgcaccaca tccggatggt gagcctagct cactttgatt attgagtaaa 840 ttaatgaaaa caaacaagta taattgtaac tataatagct ttcgtattgt tatgtgatca 900 agacacttaa aactacacac ttaagcttaa gggaagatta ttaatagaaa tatgggcata 960 catgagtgaa cctattggct taatctacct gtctgatgtc atctagaaaa ctcctaatgg 1020 tcttcaaaat gagtcctatt ggtattattg aagctactag agataacttt gggttgtcct 1080 tgactatccc ggctagcaat tccatccaat tggtagtgct ggtcttcaca gcttcaaaag 1140 agctcacatc aaggctcggc gatatcacgg tgatttccaa tggtgaaaca tcatacttgc 1200 acataagagt atcaccggag tatatgaatt tgcatttgat catggaacca actgtgaccg 1260 aatagtaagt tgttgttatg catgttcctt ttttaatgtt gttcagtatc atagggcaaa 1320 ctgccaatcc ttcgcaggcc aagatatcac tgagatagac tttgtttgaa gattcaatgc 1380 ttacagttgt cttcttaaat ttcctctcta ttccagtgat cttgcatgag gtcccattga 1440 gagatatctt actagttatt atactggtga tcgcttcctt gaattgcaag ttcagctcta 1500 ctgggaatag atccaaagtg ctcagagata taccagagct agagaccaac acatccttta 1560 agggttcact tttcacatgc tctagcatat ccactccatc cctctcaaca tacctaataa 1620 ctggcaaatc ttcatttgaa agtatcttag ttttacactt attgctaaga acaacagcat 1680 cttctttagt tggacactgt atgttgccta gtaactcctt gtcaaaagac cctaaatcat 1740 ttgcggtcct taaataagct ttcccatcgc actctgcata ttctctaggc attctggcac 1800 tattatagtt tgacaatgat atagaaacta atgggctatc atacttacta gtaatgcctc 1860 ctagttcttt caacacatgc ccattttttt gaatataccc aactatttca aacttagtat 1920 ccatgcactt cataatagtg catgctcttg aagatgttgg ttcatattct tttctcttcc 1980 aattgtagtg gtatgctggg caataggaaa agatgtggaa atcagtgaca caataatcaa 2040 agctcagact agtggattcc ccccatatcg agtgtgttcc atcagttctg caaccttccc 2100 cttcaaaaca tttccattcc tctctagaga tcaccctttt gaaactgttg gtataataca 2160 gaggcactga taagcacata acccgaacac tattaaatcg tatcttgtag acatcagtcg 2220 atgtcttgaa gcagaaatcc tgaggagtgt ttagtagggt caatttcatt ttagagatga 2280 agtcacaact attatttgtg cacctctcta tattggaaat gcttgaaaca aggtcttgac 2340 aggattcagc agaacaaact aatagcaaga tcatcaatat atatggtatg aatatcagcc 2400 cattctctac tttcctaccc ttcctcttta ctttatcgga aacattggtg ttaggtgcaa 2460 tggagtcttc tacaactaac aggccctcct ctgcttcatc cactactcta actgttgaca 2520 tatctacaga cacttcatct acaacaggtc ttctatgaca tagtccaacc attgaatata 2580 gcaccttttt tagcagccaa aatgcaggtc tcaggaaaaa taagatattc atgatggtga 2640 tgagagtgaa tactatcact attacaaaga acaagattat agagtacaat gaatatctat 2700 agatgtgaga gcattgataa ttctttatcc tcattatcat gtccattctc tcatacttat 2760 cacaaatctc tcctgggtga caagtaacat tttgacagcc acccttatca caaacttcaa 2820 tggtatcatc ataagttggg agtttgaccg attcacaaga agggatagaa aatgtttggt 2880 cactaacatt gacctcacat gcaaaattga tataatacag cacaccatct gtgcaagagg 2940 gcttgattgc aacaccatga tttatgattt cttctggttt cttagcttgg tcaggctgaa 3000 tgcatgccct agtctcaaca gcatacacta ttcccaagaa accagttttg agatttgagt 3060 atgaaatctt ttcagaattg gaattagtta tcaatagagg gcttgatgtg tattctgttt 3120 gctgtatgcc aaccagagat acattctgca gaatagcatc atcgcaactg agatagacgt 3180 gaccaccgaa cttagagaaa gaaggatgga gtggcagctt gtaatcgtag tttccagtgt 3240 agcatgtctc aaagtaattc acactagccc tgttgtaaca aatcagacca ttttcaatga 3300 aatatccatt cagctcataa gtcaatttgc agggaggggc tctggcactg caagggacct 3360 tgacaatctc agatggctcc ctctccctgt tcctcatcca agaatgggtg tcagggaaag 3420 gtattggtgc accccacgcc atattaaaga ttgtggtgta gatgaaatat gatttaaaat 3480 gcatcttcaa agaagttata cccagacttt gtgt 3514 //