ID JQ927429; SV 1; linear; genomic RNA; STD; VRL; 3513 BP. XX AC JQ927429; XX DT 03-JUL-2012 (Rel. 113, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate KunM08 segment 2, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-3513 RA Huang L., Rao L., Wu J.; RT "Genetic variability and evolution of Rice stripe virus"; RL Unpublished. XX RN [2] RP 1-3513 RA Huang L., Rao L., Wu J.; RT ; RL Submitted (16-APR-2012) to the INSDC. RL State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang RL University, Hangzhou, Zhejiang 310058, China XX DR MD5; e318d2fe9f20b320e4b733c3392d1076. XX CC GenBank Accession Numbers JQ927417, JQ927423, JQ927429, JQ927435 CC represent the complete genome of Rice stripe virus isolate KunM08. CC CC ##Assembly-Data-START## CC Assembly Method :: SeqMan II v. 5.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3513 FT /organism="Tenuivirus oryzaclavatae" FT /segment="2" FT /host="rice" FT /isolate="KunM08" FT /mol_type="genomic RNA" FT /country="China: Yunnan Province" FT /collection_date="01-Jul-2008" FT /db_xref="taxon:3052763" FT CDS 81..680 FT /codon_start=1 FT /product="NS2 protein" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:B5B628" FT /protein_id="AFM93804.1" FT /translation="MAVLLFNDHYYSFLHKYKRHTGSYDNLFNLRCSKEDYYLNSLDAI FT WLMGCCEEFTDPALRAHALAIATESNIGLVNNNAVISDERLKCWLCKKPSHQQTEHLKL FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFSFPTGLRAYYKPHQKMEHKHIVV FT TNGIPISKNFNEIALPETSLSDDYVLVGAHECPIPL" FT CDS complement(979..3483) FT /codon_start=1 FT /product="NSvc2 protein" FT /db_xref="GOA:I6UDV9" FT /db_xref="InterPro:IPR009547" FT /db_xref="UniProtKB/TrEMBL:I6UDV9" FT /protein_id="AFM93805.1" FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRNREREPSEIVKVPC FT SARAPPCKLTYDLNGYFIENGLICYNRASVNYFETCYTGNYNYKLPLHPSFSKFGGHVY FT LSCNDAILQNVSLVGIQQTEYTSSPLLITTSNSERISYSNLRTGFLGMVYAVETRACIQ FT PDQAKKPEEIINHGVAIKPSCTDGVLYYINSACEVNVSDQTFSIPSCESVKLPTYDDTI FT EVCDKGGCQNVTCHPGEICDKYERMDIIMRIKNYQCSHIYKYSLYSIILFFVIVIVFTL FT ITIMNILFFLKPAFWLLKKVLYSMVGLCHRRPAVDEVSIDMSTVRVVDEAEEGLLVVED FT SIAPNTNVSDKVRRKGRKVENGLIFIPYILMILLLVCSAESCQDLVSSISNIERCTNNS FT CDFISKMKLTLLNTPQDFCFKTSTDVYKIRFNSVRVMCLSVPLYYTNSFKRVISREEWK FT CFEGEGCRTDGTHSIWGESTSLSFDYCVTDFHIFSYCPAYHYNWKRIEYEPTSSRACTI FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSNYNSARMPREYAECDGKA FT YLRTANDLGSFDKELLGNIQCPTKDDAVVLSSKCKTKILSNEDLPVIRYIERDGVDMLE FT HVKSEPLKDVLVSSSGISLGTLDLFPVELNLQFKEAITSIITSKISLNGTSCKITGIER FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVSVGSMIKCKF FT IYSGDTIMCKYDVSPLEITVISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS FT IIPIGLILKTIRSFLDDIRQVD" XX SQ Sequence 3513 BP; 1072 A; 746 C; 635 G; 1060 T; 0 other; acacaaagtc ctgggtatat aagccacata tatcatataa atctaacaga aatcgtccac 60 ggagaatctc gtcttcagca atggcagtac ttcttttcaa tgatcactac tatagttttc 120 tccacaagta caaaagacac actggatcat atgataatct attcaatttg aggtgctcta 180 aagaagacta ctatttaaac tctcttgatg ccatctggct catgggatgc tgtgaggagt 240 tcacagaccc agctcttaga gcacatgctc tcgccatagc cactgaatca aacataggtt 300 tggttaacaa caatgctgtg atatctgatg agaggctgaa gtgctggctc tgtaaaaaac 360 catctcacca acagactgag catctaaaac tgattctgtt acctaacttg gtcaacgggt 420 ttcagtttgc aacagagtca tatcacatat gcctgaagga tcactctgga gatgacccta 480 cacaatatct tagtgaattc tcttttccca caggattgag agcctactac aagccacatc 540 agaagatgga gcacaagcat atagttgtaa ccaatggaat acccatctca aagaatttca 600 atgaaattgc tctccctgaa acatctctta gtgatgacta tgtcttggtt ggagcacatg 660 agtgcccaat tccactgtga gcttagagaa taatattgat tgcagcctat gggaacatac 720 acacactagc cacgaacact acaatggtgc tatgcatcaa tctataatct tatatcctcg 780 aaatggtgct acgcaccaca tccggatggt gagcctagct cactttgggt attgagtaaa 840 ttagtgaaaa gaacaagtgt aattataact ataatagctt tcttattatt atgtgactaa 900 cagtcttgta actacatact taagctgaag taaagattac caatagaaat atgggcatac 960 atgagtgaac ctattaactt aatcaacctg cctgatgtca tctagaaaac tcctaatggt 1020 ctttaaaatg agtcctattg gtattattga ggccactaga gacaactttg ggttatcctt 1080 gactatccca gctaataact ccatccaatt ggttgtgctg gtcttcactg cctcaaaaga 1140 gctcacatct aagctcggtg atatcacggt gatctctaat ggtgaaacat catacttgca 1200 cataatagta tcaccagagt atatgaattt gcatttgatc atggaaccaa ctgagacaga 1260 atagtaagtt gttgttatgc atgtaccttt tttgatgttg ttcagtatca tcgggcaaac 1320 cgccaatccc tcgcaagcca agatatcact gagatagact ttgtttgaag attctatact 1380 aactgttgtc ttcttaaatt tcctctctat tccagtgatc ttgcatgagg tcccattgag 1440 ggatatctta ctagttatta tgctagtgat agcctccttg aactgcaagt tcagctccac 1500 tgggaataga tccaacgtgc ctagagatat accagagcta gagactaaca catcctttaa 1560 gggttcactc tttacatgct ctagcatatc tactccatcc ctctctatat acctgataac 1620 tggtaaatcc tcatttgaga gtatcttagt tttacactta ctgctaagaa caacagcatc 1680 gtctttagtt ggacactgta tgttgccaag taactcctta tcaaaagatc ctaaatcatt 1740 tgctgttctt aaataagcct tcccatcaca ctctgcatat tctctgggca ttctggcact 1800 attgtagttt gacaacgata tagaaaccaa agggctatca tacttactag taatgcctcc 1860 taattctttt aacacatgtc cattcttctg aatataccca actatctcga acttagtatc 1920 catgcatttc atgatggtgc atgctctaga agatgttggt tcatattcta ttctcttcca 1980 attgtagtgg tatgctgggc aataggaaaa gatgtggaaa tcagtgacac aataatcgaa 2040 gctcagacta gtggattccc cccatattga gtgtgttcca tcagttctgc aaccttcccc 2100 ttcaaagcat ttccattcct ctctagaaat cacccttttg aaactgttag tgtaatacag 2160 aggcactgat aagcacatta cacgaacact attgaatcgt atcttataaa catctgtcga 2220 tgtcttgaag cagaaatcct gaggagtgtt tagtagggtc aatttcatct tggagatgaa 2280 atcacaacta ttatttgtgc acctctctat gttggaaatg cttgagacaa ggtcttgaca 2340 ggattctgca gagcaaacca gtagcaagat catcaatata tatggtatga atatcagccc 2400 attctctact ttcctacctt tccttcttac tttatctgaa acattagtgt taggtgcaat 2460 ggagtcttca acaactaata ggccctcttc tgcttcatcc acgactctaa ctgttgacat 2520 atctatagat acttcatcta cagcaggtct tctatgacac agtccaacca ttgaatatag 2580 aaccttcttc agcaaccaaa atgcaggttt tagaaagaat aagatgttca ttatggtgat 2640 aagagtgaac actatcacta taacgaagaa caagattata gagtacagcg aatatttata 2700 gatgtgagag cattgataat tctttatcct catgatgatg tccattctct catacttgtc 2760 acaaatctct cctgggtgac atgttacatt ttgacaacca cccttatcac aaacctcaat 2820 agtatcatca taagttggca gtttgaccga ttcacaagaa gggatagaaa atgtttggtc 2880 actcacatta acctcacatg cagagttgat gtaatacagc acaccatctg tgcatgaggg 2940 cttgattgca acaccatgat ttatgatttc ttctggtttc ttagcttgat caggttgaat 3000 acatgcccta gtttcaacag catacaccat tcccaagaaa ccagttctga gatttgagta 3060 tgaaatcctt tcagaattgg aagtagttat caacagaggg cttgatgtgt attctgtttg 3120 ctgtatgcca actagtgaca cattctgcag aatagcatca ttacaagaga gatagacgtg 3180 accaccgaac ttagagaagg aaggatggag aggcagcttg taattgtaat taccagtgta 3240 gcatgtctca aagtaattca cactagccct gttgtaacaa atcagaccat tctcaataaa 3300 gtatccattc agatcataag tcaatttgca aggaggggct ctggcactgc aagggacctt 3360 aacaatctca gatggttccc tctccctgtt cctcatccat gaatgggtgt cagggaaagg 3420 tattggtgca ccccacgcca tattaaagat tgtggtgtag atgaaatatg atttaaaatg 3480 catcttcgaa gaagttatac ccagactttg tgt 3513 //