ID JQ927427; SV 1; linear; genomic RNA; STD; VRL; 3514 BP. XX AC JQ927427; XX DT 03-JUL-2012 (Rel. 113, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Rice stripe virus isolate HuZ10 segment 2, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RC Publication Status: Online-Only RP 1-3514 RX PUBMED; 23029445. RA Xu Y., Huang L., Fu S., Wu J., Zhou X.; RT "Population Diversity of Rice Stripe Virus-Derived siRNAs in Three RT Different Hosts and RNAi-Based Antiviral Immunity in Laodelphgax RT striatellus"; RL PLoS One 7(9):E46238(2012). XX RN [2] RP 1-3514 RA Huang L., Rao L., Wu J.; RT "Genetic variability and evolution of Rice stripe virus"; RL Unpublished. XX RN [3] RP 1-3514 RA Huang L., Rao L., Wu J.; RT ; RL Submitted (16-APR-2012) to the INSDC. RL State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang RL University, Hangzhou, Zhejiang 310058, China XX DR MD5; b063ae1f4405bd489b461c8d70771d14. DR EuropePMC; PMC3460854; 23029445. XX CC GenBank Accession Numbers JQ927415, JQ927421, JQ927427, JQ927433 CC represent the complete genome of Rice stripe virus isolate HuZ10. CC CC ##Assembly-Data-START## CC Assembly Method :: SeqMan II v. 5.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3514 FT /organism="Tenuivirus oryzaclavatae" FT /segment="2" FT /host="rice" FT /isolate="HuZ10" FT /mol_type="genomic RNA" FT /country="China: Zhejiang Province" FT /collection_date="25-Jul-2010" FT /db_xref="taxon:3052763" FT CDS 81..680 FT /codon_start=1 FT /product="NS2 protein" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:I6UG35" FT /protein_id="AFM93818.1" FT /translation="MALLLFNDHYYGFLHKYKRHTGSYDNLFNLRCSKEDHYLNSLDAI FT WLMGCCEEFTDPALRAHALAIATESNIGLVNNNTVISDERLKCWLCKKPSHQQTEHLKL FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFSFPTGLRAYYKPHQKMEHKHIVV FT TNGIPISKNFNEIALPDPSPSEDYVLVGAHECPILM" FT CDS complement(980..3484) FT /codon_start=1 FT /product="NSvc2 protein" FT /db_xref="GOA:I6TBC4" FT /db_xref="InterPro:IPR009547" FT /db_xref="UniProtKB/TrEMBL:I6TBC4" FT /protein_id="AFM93819.1" FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRNREREPSEIVKVPC FT SARAPPCKLTYELNGYFIENGLICYNRASVNYFETCYTGNYDYKLPLHPSFSKFGGHVY FT LSCDDAILQNVSLVGIQQTEYTSSPLLITNSNSEKISYSNLKTGFLGIVYAVETRACIQ FT PDQAKKPEEIINHGVAIKPSCTDGVLYYINSACEVNVSDQTFSIPSCESVKLPTYDDTI FT EVCDKGGCQNVTCHPGEICDKYERMDMIMRIKNYQCSHIYRYSLYSIILFFVIVIVFTL FT ITIMNILFFLKPAFWLLKKILYSMVGLCHRRPVVDEVSVDMSTVRVVDEAEEGLLVVED FT SIAPNTNVSDRVKRKGRKVENGLIFIPYVLMILLLVCSAESCQDLVSSISNIERCTNNS FT CDFISKMKLTLLNTPQDFCFKTSTDVYKIRFNSVRVMCLSVPLYYTNSFKRVISREEWK FT CFEGEGCRTDGTHSIWGESTSLSFDYCVTDFHIFSYCPAYHYNWKRIEYEPTSSRACTI FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSSYNSVRMPREYAECDGKA FT YLRTANDLGSFDKELLGNIQCPTKEDAVVLSSKCKTKILSNEDLPVIRYVERDGVDMLE FT HVKSEPLKDVLVSSSGISLGTLDLFPVELNLQFKEAITSIITSKIFLNGTSCKITGIER FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVTVGSMIKCKF FT IYSGDTLMCKYDVSPLEITVISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS FT IIPIGLILKTIRSFLDDIRQVD" XX SQ Sequence 3514 BP; 1078 A; 745 C; 626 G; 1065 T; 0 other; acacaaagtc ctgggtatat aagccacata tatcatataa atctaacaga aatcgtccac 60 ggagaatctc gtcttcagca atggcattac tcctcttcaa tgatcactac tatggttttc 120 tccataagta taaaagacat actggatcat atgataatct cttcaatttg aggtgctcta 180 aagaagacca ctatttgaac tctcttgatg ccatctggct catgggatgc tgtgaggagt 240 tcacagatcc agctcttaga gcacatgctc tcgccatagc aactgaatct aacataggtt 300 tggttaacaa taataccgtg atatctgatg agaggctgaa atgctggctc tgtaaaaaac 360 catctcatca acagactgag catctgaaac tgatcctgtt acccaacttg gtcaacgggt 420 ttcagtttgc tacagagtca tatcacatat gcctgaagga tcactctgga gatgacccta 480 cacaatatct tagtgagttc tcctttccca caggattaag agcctactac aagccacatc 540 agaagatgga gcataaacat atagttgtaa ccaatgggat acccatctca aagaatttca 600 acgaaattgc tctccctgac ccatctccta gtgaagacta tgtcttggtt ggagcacatg 660 agtgccctat tctaatgtga acttggaaga tgatattgac tgtgacctac aggcacatac 720 acacactggc cacaaacact acaatggtgc tatgcatcaa tttataatct tatatcctcg 780 aaatggtgct acgcaccaca tccggatggt gagcctagct cactttgatt attgagtaaa 840 ttaatgaaaa caaacaagta taattgtaac tataatagct ttcttattat tatgtgatca 900 agacacttaa aactacacac ttaagcttaa gggaagatta ttaatagaaa tatgggcata 960 tatgagtgaa cctattggct taatcaacct gtctgatgtc atctagaaaa ctcctaatgg 1020 tcttcaaaat gagtcctatt ggtattattg aagctactag agataacttt gggttgtcct 1080 tgactatccc ggctagcaat tccatccaat tggtggtgct ggtcttcaca gcttcaaaag 1140 agctcacatc aaggctcggc gatatcacgg tgatttccaa tggtgaaaca tcatacttgc 1200 acataagagt atcaccggag tatatgaatt tgcatttgat catggaacca actgtgaccg 1260 aatagtaggt tgttgttata catgttcctt ttttaatgtt gttcagtatc atagggcaaa 1320 ctgccaatcc ttcgcaggcc aagatatcac tgagatagac tttgtttgaa gattcaatgc 1380 ttacagttgt cttcttaaat ttcctctcta ttccagtgat cttgcatgag gtcccattga 1440 gaaatatctt acttgttatt atactggtga tcgcttcctt gaattgcaag ttaagctcca 1500 ctgggaatag atccaaagtg cccagagata taccagagct agagaccaac acatccttta 1560 agggttcact tttcacatgc tctagcatat ccactccatc cctctctaca tacctaataa 1620 ctggcaaatc ttcatttgaa agtatcttag ttttacactt actgctaaga acaacagcat 1680 cttctttagt tggacactgt atgttgccta gtaactcctt gtcaaaagac cctaaatcat 1740 ttgcggtccg taaataagct ttcccatcgc actctgcata ttctctaggc attctgacac 1800 tattatagct tgacaatgat atggaaacta aagggctatc atacttacta gtaatgcctc 1860 ctagttcttt caacacatgc ccattttttt gaatataccc aactatttca aacttagtat 1920 ccatgcactt cataatggtg catgctcttg aagatgttgg ttcatattct attctcttcc 1980 aattgtagtg gtatgctggg caataagaaa agatgtggaa atcagtgaca caataatcaa 2040 agctcagact agtggattcc ccccatatcg agtgtgttcc atcagttctg caaccttccc 2100 cttcaaaaca tttccattcc tctctagaga tcaccctttt gaaactgtta gtataataca 2160 gaggcactga taagcacata acccgaacac tattaaatcg tatcttgtag acatcagtcg 2220 atgtcttgaa gcagaaatcc tgaggagtgt ttagtagggt caatttcatt ttagagatga 2280 agtcacaact attatttgtg cacctctcta tattggaaat gcttgaaaca aggtcttgac 2340 aggattctgc agaacaaact aatagcaaga tcatcaatac atatggtatg aatatcagac 2400 cattctctac ttttctaccc ttcctcttta ctctatcgga aacattagtg ttaggtgcaa 2460 tggagtcttc tacaaccaac aggccctcct ctgcttcatc cactactcta actgttgaca 2520 tatctacaga cacttcatct acaacaggtc ttctatgaca tagtccaacc attgaatata 2580 gtatcttttt tagcagccaa aatgcaggtt ttagaaaaaa taagatattc attatggtga 2640 tgagagtgaa tactatcact ataacaaaga acaagattat agagtacaat gaatatctat 2700 agatgtgaga gcattgataa ttctttatcc tcattatcat gtccattctc tcatacttat 2760 cacaaatctc tcctgggtga caagtaacat tttgacaacc acccttatca caaacttcaa 2820 tagtatcatc ataagttgga agtttgaccg attcacaaga agggatagaa aatgtttggt 2880 cactaacatt gacctcacat gcagaattga tataatacag cacaccatct gtgcaagagg 2940 gcttgattgc aacaccatga tttatgattt cttctggttt cttagcttgg tcaggctgaa 3000 tgcatgccct agtctcaaca gcatatacta ttcccaagaa accagttttg agatttgagt 3060 atgaaatctt ttcagaattg gaattagtta tcaatagagg gcttgatgtg tattctgttt 3120 gctgtatgcc aaccagagat acattctgca gaatagcatc atcgcaactg agatagacgt 3180 gaccaccaaa cttagagaaa gaaggatgga gtggcagctt gtaatcgtag tttccagtgt 3240 agcatgtctc aaagtaattc acactggccc tgttgtaaca aatcagacca ttttcaatga 3300 aatatccatt cagctcataa gtcaatttgc agggaggggc tctggcactg caagggacct 3360 tgacaatctc agatggctcc ctctccctgt tcctcatcca agaatgggtg tcagggaaag 3420 gtattggtgc accccacgcc atattaaaga ttgtggtgta gatgaaatat gatttaaaat 3480 gcatcttcga agaagttata cccagacttt gtgt 3514 //