ID JQ927426; SV 1; linear; genomic RNA; STD; VRL; 3512 BP. XX AC JQ927426; XX DT 03-JUL-2012 (Rel. 113, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate DaL08 segment 2, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-3512 RA Huang L., Rao L., Wu J.; RT "Genetic variability and evolution of Rice stripe virus"; RL Unpublished. XX RN [2] RP 1-3512 RA Huang L., Rao L., Wu J.; RT ; RL Submitted (16-APR-2012) to the INSDC. RL State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang RL University, Hangzhou, Zhejiang 310058, China XX DR MD5; 7c9e9bc9ca6b8557a10be43a44da8ade. XX CC GenBank Accession Numbers JQ927414, JQ927420, JQ927426, JQ927432 CC represent the complete genome of Rice stripe virus isolate DaL08. CC CC ##Assembly-Data-START## CC Assembly Method :: SeqMan II v. 5.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..3512 FT /organism="Tenuivirus oryzaclavatae" FT /segment="2" FT /host="rice" FT /isolate="DaL08" FT /mol_type="genomic RNA" FT /country="China: Yunnan Province" FT /collection_date="01-Jul-2008" FT /db_xref="taxon:3052763" FT CDS 81..680 FT /codon_start=1 FT /product="NS2 protein" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:I6UDX2" FT /protein_id="AFM93825.1" FT /translation="MAVLLFNDHYYSFLHKYKRHTGSYDNLFNLRCSKEDYYLNSLDAI FT WLMGCCEEFTDPALRAHALAIATESNIGLVNNNAVISDERLKCWLCKKPSHQQTEHLKL FT ILLPNLVNGFQFATESYHICLKDHSGDDPTQYLSEFSFPTGLRAYYKPHQKMEHKHIVV FT TNGIPISKNFNEIALPETSFSDDYVLVGAHECPIPL" FT CDS complement(978..3482) FT /codon_start=1 FT /product="NSvc2 protein" FT /db_xref="GOA:I6U4U9" FT /db_xref="InterPro:IPR009547" FT /db_xref="UniProtKB/TrEMBL:I6U4U9" FT /protein_id="AFM93826.1" FT /translation="MHFKSYFIYTTIFNMAWGAPIPFPDTHSWMRNREREPSEIVKIPC FT SARAPPCKLTYDLNGYFIENGLICYNRASVNYFETCYTGNYNYKLPLHPSFSKFGGHVY FT LSCDDAILQNVSLVGIQQTEYTSSPLLITTSNSERISYSNLRTGFLGMVYAVETRACIQ FT SDQAKKPEEIINHGVAIKPSCTDGVLYYINSACEVNVSDQTFSIPSCESVKLPTYDDTI FT EVCDKGGCQNVTCYPGEICDKYERMDIIMRIKNYQCSHIYKYSLYSIILFFIIVIVFTL FT ITIMNILFFLKPAFWLLKKVLYSMVGLCHRRPAVDEVSIDMSTVRVVDEAEEGLLVVED FT SIAPNTNVSDKVRRKGRKVENGLIFIPYILMILLLVCSAESCQDLVSSISNIERCTNNS FT CDFISKMKLTLLNTPQDFCFKTSTDVYKIRFNSVRVMCLSVPLYYTNSFKRVISREEWK FT CFEGEGCRTDGTHSIWGESTSLSFDYCVTDFHIFSYCPAYHYNWKRIEYEPTSSRACTI FT MKCMDTKFEIVGYIQKNGHVLKELGGITSKYDSPLVSISLSNYNSARMPREYAECDGKA FT YLRTANDLGSFDKELLGNIQCPTKDDAVVLSSKCKTKILSNEDLPVIRYIERDGVDMLE FT HVKSEPLKDVLVSSSGISLGTLDLFPVELNLQFKEAITSIITSKISLNGTSCKITGIER FT KFKKTTVSIESSNKVYLSDILACEGLAVCPMILNNIKKGTCITTTYYSVSVGSMIKCKF FT IYSGDTIMCKYDVSPLEITLISPSLDVSSFEAVKTSTTNWMELLAGIVKDNPKLSLVAS FT IIPIGLILKTIRSFLDDIRQVD" XX SQ Sequence 3512 BP; 1075 A; 740 C; 634 G; 1063 T; 0 other; acacaaagtc ctgggtatat aagccacata tatcatataa atctaacagg aatcgtccac 60 ggagaatctc gtcttcagca atggcagtac ttcttttcaa tgatcactac tatagttttc 120 tccataagta caaaagacac actggatcat atgataatct attcaatttg aggtgctcta 180 aagaagacta ctatttgaac tctcttgatg ccatctggct catgggatgc tgtgaggagt 240 tcacagaccc agctcttaga gcacatgctc tcgccatagc cactgaatca aacataggtt 300 tggtgaacaa caatgctgtg atatctgatg agaggctgaa gtgctggctc tgtaaaaaac 360 catctcatca acagactgag catctgaaac tgattctgtt gcctaactta gtcaacgggt 420 ttcagtttgc aacagagtca tatcacatat gcctgaagga tcactctgga gatgacccta 480 cacaatatct tagtgaattc tcatttccca caggattgag agcctactac aagccacatc 540 agaagatgga gcacaagcat atagttgtaa ccaatggaat acccatctca aagaatttca 600 atgaaattgc tctccctgaa acatctttta gtgatgacta tgtcttggtt ggagcacatg 660 agtgccctat tccactgtga gcttagaaaa taatattgac tgcagcctat gggaacatac 720 acacactggc cacgaacact acaatggtgc tacgcatcaa tccacaatct tatatcctcg 780 aaatggtgct acgcaccata tccggatggt gagcctagct cactttgggt attgagtaaa 840 ttagtaaaaa aacaagtgta attataacta taatagcttt cttgttatca tgtgactaac 900 aatcttgtaa ctacatactt aagctaaaat aaagattact aatagaaata tgggcataca 960 tgagtgaacc tattaactta atctacctgt ctgatgtcat ctagaaaact cctaatggtc 1020 tttaaaatga gtcctattgg tattattgag gccactagag acaactttgg gttatccttg 1080 actatcccag ctaataactc catccaattg gttgtgctgg tcttcacagc ctcaaaagag 1140 ctcacatcta agctcggtga tatcaaggtg atctctaatg gtgaaacatc atacttacac 1200 ataatagtat caccagagta tatgaatttg catttgatca tggaaccaac tgagacagaa 1260 tagtaagttg ttgttatgca tgtacctttt ttgatgttgt tcagtatcat cgggcaaacc 1320 gccaatccct cgcaagccaa gatatcactg agatagactt tgttggaaga ttctatacta 1380 actgttgtct tcttaaattt cctctctatt ccagtgatct tgcatgaggt cccattgagg 1440 gatatcttac tagttattat gctagtgatc gcctccttga actgcaagtt cagttccact 1500 gggaatagat ccaacgtgcc tagagatata ccagagctag agactaacac atcctttaag 1560 ggttcactct ttacatgctc tagcatatct actccatccc tctctatata cctgataact 1620 ggtaaatcct catttgaaag tatcttagtt ttacacttac tgctaagaac aacagcatcg 1680 tctttagttg gacactgtat gttgccaagt aactccttat caaaagatcc taaatcattt 1740 gctgttctta aataagcctt cccatcacac tcggcatatt ctctgggcat tctggcacta 1800 ttgtagtttg acaacgatat agaaaccaaa gggctatcat acttactagt aatgcctccc 1860 aattctttta acacatgtcc attcttctga atatacccaa ctatctcgaa cttagtatcc 1920 atgcatttca taatggtgca tgctctagaa gatgttggtt catattctat tctcttccaa 1980 ttgtagtggt atgctgggca ataggaaaag atgtggaaat cagtgacaca ataatcgaag 2040 ctcagactag tggattcccc ccatattgag tgtgttccat cagttctgca accttcccct 2100 tcaaagcatt tccattcctc tctagaaatc acccttttga aactgttagt gtaataaaga 2160 ggcactgata agcacattac acgaacacta ttgaatcgta tcttataaac atctgtcgat 2220 gtcttgaagc agaaatcctg aggagtgttt agtagggtca acttcatctt ggagatgaaa 2280 tcacaactat tatttgtgca cctctctatg ttggaaatgc ttgagacaag gtcttgacag 2340 gattctgcag agcaaaccag tagcaagatc attaatatat atggtatgaa tatcagccca 2400 ttctctactt ttctaccttt ccttcttact ttatctgaaa cattagtgtt aggtgcaatg 2460 gagtcttcaa caactaatag gccctcttct gcttcatcca cgactctaac agttgacata 2520 tctatagata cttcatctac agcaggtctt ctatgacaca gtccaaccat tgaatataga 2580 accttcttca gcaaccaaaa tgcaggtttt agaaagaata agatgttcat tatggtgatg 2640 agagtgaaca ctatcactat aatgaagaac aagattatag agtacagcga atatttatag 2700 atgtgagagc attgataatt ctttatcctc atgatgatgt ccattctctc atacttgtca 2760 caaatctctc ctgggtaaca tgttacattt tggcaacctc ccttatcaca aacttcaata 2820 gtatcatcat aagttggcag tttgaccgat tcacaagaag ggatagaaaa tgtttggtca 2880 ctcacattaa cctcacatgc agagttgatg taatacagca caccatctgt gcatgagggc 2940 ttgattgcaa caccatgatt tatgatttct tctggtttct tagcttgatc agattgaatg 3000 catgctctgg tttcaacagc atacaccatt cccaagaaac cagttctgag atttgagtat 3060 gaaatccttt cagaattgga agtagttatc aacagagggc ttgatgtgta ttctgtttgc 3120 tgtatgccaa ctagtgacac attctgcaga atagcatcat cacaagaaag ataaacgtga 3180 ccaccgaact tagagaagga aggatggaga ggcagcttgt aattgtaatt accagtgtag 3240 catgtctcaa agtaattcac actagccctg ttgtaacaaa tcagaccatt ctcaataaag 3300 tatccattca gatcataagt caatttgcaa ggaggggctc ttgcactgca agggatcttg 3360 acaatctcag atggttccct ctccctgttc ctcatccatg aatgggtgtc agggaaaggt 3420 attggtgcac cccacgccat attaaagatt gtggtgtaga tgaaatatga tttaaaatgc 3480 atcttcgaag aagttatacc cagactttgt gt 3512 //