ID JQ927424; SV 1; linear; genomic RNA; STD; VRL; 2480 BP. XX AC JQ927424; XX DT 03-JUL-2012 (Rel. 113, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate LiaoN08 segment 3, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-2480 RA Huang L., Rao L., Wu J.; RT "Genetic variability and evolution of Rice stripe virus"; RL Unpublished. XX RN [2] RP 1-2480 RA Huang L., Rao L., Wu J.; RT ; RL Submitted (16-APR-2012) to the INSDC. RL State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang RL University, Hangzhou, Zhejiang 310058, China XX DR MD5; 28ca2089812e017663d140fe39e4a8ae. XX CC GenBank Accession Numbers JQ927418, JQ927424, JQ927430, JQ927436 CC represent the complete genome of Rice stripe virus isolate LiaoN08. CC CC ##Assembly-Data-START## CC Assembly Method :: SeqMan II v. 5.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2480 FT /organism="Tenuivirus oryzaclavatae" FT /segment="3" FT /host="rice" FT /isolate="LiaoN08" FT /mol_type="genomic RNA" FT /country="China: Liaoning Province" FT /collection_date="01-Jul-2008" FT /db_xref="taxon:3052763" FT CDS 66..701 FT /codon_start=1 FT /product="NS3 protein" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:I6UDV2" FT /protein_id="AFM93795.1" FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPSPGSSLAVL" FT CDS complement(1420..2388) FT /codon_start=1 FT /product="CP" FT /db_xref="GOA:Q8JRD1" FT /db_xref="InterPro:IPR008864" FT /db_xref="InterPro:IPR009522" FT /db_xref="UniProtKB/TrEMBL:Q8JRD1" FT /protein_id="AFM93796.1" FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD" XX SQ Sequence 2480 BP; 759 A; 528 C; 430 G; 763 T; 0 other; acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc cgacatcatc 60 taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga atttgatcat cctctgcttt 120 tggagaatga tctgaccagt ttgagcataa actgtgatga tgtccattgt tcttcaagag 180 ccttatgtta tatatatgac atccattcat ctaggcaccc ttccattgat gagcatcagt 240 ttctgaggct tcttcatggt cctgatgatg ctgtcactct aggctccttc ttgaaaactc 300 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt cctactataa 360 tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa gccaagaccc ccatcaacaa 420 attgctggac atgcagaatg tccaaagaca atttgccctt caccgttcct agtgtcaagg 480 gatttcctcc agatgcagag ctctacattg tgccaatatc tgaccatgat ggaaagcctg 540 tcaaatttga caataggaag actctatata gatcacctag taagaaaagg cataagtatg 600 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt gattctagtg 660 cactagaacc ctcaccaggc agctctctag ctgtactgta gaaataaaaa gaaaaaagaa 720 aaaagaaaat aaaacaaata atcaaaaaaa caaaaaaatc ttaaaaatgg aaaacacaaa 780 aaaaccaaaa aactaaaaaa aactaaaaac catcatgacc taaaaaacct gcacaccact 840 ggttgtctag tgggctctag ttggtagaga aagctatgct tttgcctaaa gccatgattg 900 gccaatcctt aaaatgtgct aagcacatta tccgaagatg tctcggatgt tttttttacc 960 taacctaatt tttttgtatt tttatataat tttttgattt ttttgtattt tatatacata 1020 tttttgtttt ttgatttttt tggtttttga tattttttct tctaattact acattaatat 1080 atttgattat tcatatactt aaaatatata gtttgtatta taaaaataga gcaatataat 1140 aaagctagta taactacatt acaaaaacat atatctaaat atttagatag acttatcaaa 1200 ctaaagactc tactagagag tgagtaataa taatggcaat acatcacaca caaagcccaa 1260 aaccacacag acaaaataac ttatggaata taatttaaaa ctaaaatata cacatataaa 1320 tatacatatt aacttacacc taaagaaaca acacactgtt tgaagacatg catcttccag 1380 ggagatatga gatcccccac aactaccgac ttgctcagtc tagtcatctg caccttctgc 1440 ctcgtcctcg aagaactcct tcaccaaccc gctgacttca gatgctgtct ttgaagtgtt 1500 ctcagcaagg atcttcatca gtttgctctg ttgagccaag tacagccttg tctgattccc 1560 ataagtgctg atcgtattga cagacatacc agccagcgca tcgaagattg tggtcttcac 1620 tttcccattg gtgatgaatt catctaagac cttctttctg ccatcttcct tcttcttgtc 1680 agccaggttc tttgacttgc atgtgataac caggagacca gttgtgtact tcatcatgtc 1740 tatgtctttt gtcagaccac gctccttctt cttaccctct ggcatggtct ttttggttat 1800 ttggaaggag tgaatgatgt gcacaacaaa caaaatgtga cttagggagt gagttgtgca 1860 gtaaggagct gtttcgctct ccagtttgat atattgtgga acatagtccc acagtaagtt 1920 gtcacatcct gttagtccca ggtcagagga gtctacagcc atcttaacac cagaaatttg 1980 tctcacaact tcatgtgaga catttgggaa tagctgagcc agccttccaa gtgtgatagc 2040 attggcattt gtccccaccg aggacactat cccatacctc gacaccaagg tcgaagcctc 2100 tgtgcttcca gccgccactt tcactttctt agtgacatct ctcacaaagc cagtgcctct 2160 cacatatctc atggtgatgc acatagtcat atccttggcc agtgtgtcac cacctttgtc 2220 cttcaatatg ccaatcagag ttgcagcatc atagcctgca tactctatct gaccagcaaa 2280 ggtcacaaca tcagctttat gagcagtcag gtaagacaac gcatctttgg agatgtcatt 2340 gattgccttc tgcaaatcag ctagagtggc tggcttgttg gtgcccattg tagcaagagg 2400 tactggagga atggttgcgg cttagatgaa atttggaatg taaaagcaaa atcgaaaatt 2460 ttattaccca gactttgtgt 2480 //