ID JQ927422; SV 1; linear; genomic RNA; STD; VRL; 2478 BP. XX AC JQ927422; XX DT 03-JUL-2012 (Rel. 113, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate JiangY10 segment 3, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-2478 RA Huang L., Rao L., Wu J.; RT "Genetic variability and evolution of Rice stripe virus"; RL Unpublished. XX RN [2] RP 1-2478 RA Huang L., Rao L., Wu J.; RT ; RL Submitted (16-APR-2012) to the INSDC. RL State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang RL University, Hangzhou, Zhejiang 310058, China XX DR MD5; 834109dd5372d10b57da6f201a869a75. XX CC GenBank Accession Numbers JQ927416, JQ927422, JQ927428, JQ927434 CC represent the complete genome of Rice stripe virus isolate CC JiangY10. CC CC ##Assembly-Data-START## CC Assembly Method :: SeqMan II v. 5.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2478 FT /organism="Tenuivirus oryzaclavatae" FT /segment="3" FT /host="rice" FT /isolate="JiangY10" FT /mol_type="genomic RNA" FT /country="China: Suzhou Province" FT /collection_date="25-Jul-2010" FT /db_xref="taxon:3052763" FT CDS 66..701 FT /codon_start=1 FT /product="NS3 protein" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:I6TBB7" FT /protein_id="AFM93809.1" FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN FT RKTLYRSPSKNRHKYVISSDKPPLSARYVKYVDSSALEHSPGSSPAVL" FT CDS complement(1418..2386) FT /codon_start=1 FT /product="CP" FT /db_xref="GOA:Q8JRD1" FT /db_xref="InterPro:IPR008864" FT /db_xref="InterPro:IPR009522" FT /db_xref="UniProtKB/TrEMBL:Q8JRD1" FT /protein_id="AFM93810.1" FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD" XX SQ Sequence 2478 BP; 755 A; 529 C; 433 G; 761 T; 0 other; acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc cgacatcatc 60 taagtatgaa cgtgttcaca tcgtctgtgg gttctgtgga atttgatcat cctctgcttt 120 tggagaatga tctgaccagt ttgagcataa actgtgatga tgtccattgt tcttcaagag 180 ccttatgtta tatatatgac attcattcat ctaggcaccc ttccattgat gagcatcagt 240 ttctgaggct tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc 300 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt cctactataa 360 tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa gccaagaccc ccatcaacaa 420 attgctggac atgcagaatg tccaaagaca atttgccctt taccgttcct agtgtcaagg 480 ggtttcctcc agatgcagag ctctacattg tgccaatatc tgaccatgat ggaaagcctg 540 tcaaatttga taataggaag actctatata gatcacctag taagaatagg cataagtatg 600 tcatttcttc tgataaacca cctcttagtg cacgttatgt taagtacgtt gattctagtg 660 cactagaaca ctcaccaggc agctctccag ctgtgctgta ggaataaaaa agaaaaaagg 720 aaaaaagaaa ataaaacaaa caatcaaaaa aacacaaaaa aatcttaaaa tgaaaaacac 780 aaaaaaccaa aaaactaaaa aactaaaaac atcatgacct gagaactgca caccactggt 840 tgtctagtgg gctctagttg gtagagaaag ctaagctttt gcctaaagcc atgattggcc 900 aatccttaaa atgtgctaag cacattatcc gaagatgtct cggatgtttt tttacctaac 960 ctaatttttt tgtattttta tataattttt tgattttttt gtattttata tacatatttt 1020 tgttttttga ttttttttgt tttttaatat tattttttct tctaattact acattaatat 1080 atttgattat tcatatactt aaaatacata gtatgtatta taaaaataga gcaatataat 1140 aaagctagca taactacatt acaaacatat atctaaacat ttagatagac ttatcaaact 1200 aaagactcta ctagagagtg agtaataata atggcaatac atcacacaca aagcccaaaa 1260 ccacacagac aaaataactt atggaatata attaaaaact aaaatataca catataaata 1320 tacatattaa cttacaccta aagaaacaac acactgtttg aagacatgca tcttccaggg 1380 agatatgaga tcccccacaa ctactgactt gttcagtcta gtcatctgca ccttctgcct 1440 cgtcctcgaa gaactccttc accaacccgc tgacttcaga tgctgtcttt gaagtgttct 1500 cagcaaggat cttcatcagt ttgctctgtt gagccaagta cagccttgtc tgattcccat 1560 aagtgctgat cgtattgaca gacataccag ccagcgcatc gaagattgtg gtcttcactt 1620 tcccattggt gatgaattca tctaagacct tctttctgcc atcttccttc ttcttgtcag 1680 ccaggttctt tgacttgcat gtgatgacca ggagaccagt tgtgtacttc atcatgtcta 1740 tgtcttttgt cagaccacgc tccttcttct taccctctgg catggtcttt ttggttattt 1800 ggaaggagtg aatgatgtgc acaacaaaca aaatgtgact tagggagtga gttgtgcagt 1860 aaggagctgt ttcactctcc agtttgatat actgtggaac atagtcccac agtaagttgt 1920 cacatcctgt tagtcccagg tcagaggagt ccacagccat cttaacacca gaaatttgtc 1980 tcacaacttc atgtgagaca tttgggaata gctgagccag ccttccaagt gtgatagcat 2040 tggcatttgt ccccaccgag gacactatcc catacctcga caccaaggtc gaagcctctg 2100 tgcttccagc cgccactttc actttcttag tgacatctct cacaaagcca gtgcctctca 2160 catatctcat ggtgatgcac atagtcatat ccttggccag tgtgtcacca cctttgtcct 2220 tcaatatgcc aatcagagtt gcagcatcat agcctgcata ctctatctga ccagcaaagg 2280 tcacaacatc agctttatga gcagtcaggt aagacaacgc atctttggag atgtcattga 2340 ttgccttctg caaatcagct agagtggctg gcttgttggt gcccattgta gcaagaggta 2400 ctggaggaat ggttgcggct tagatgaaat ttggaatgta aaagcaaaat cgaaaatttt 2460 attacccaga ctttgtgt 2478 //