ID JQ927421; SV 1; linear; genomic RNA; STD; VRL; 2482 BP. XX AC JQ927421; XX DT 03-JUL-2012 (Rel. 113, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 3) XX DE Rice stripe virus isolate HuZ10 segment 3, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RC Publication Status: Online-Only RP 1-2482 RX PUBMED; 23029445. RA Xu Y., Huang L., Fu S., Wu J., Zhou X.; RT "Population Diversity of Rice Stripe Virus-Derived siRNAs in Three RT Different Hosts and RNAi-Based Antiviral Immunity in Laodelphgax RT striatellus"; RL PLoS One 7(9):E46238(2012). XX RN [2] RP 1-2482 RA Huang L., Rao L., Wu J.; RT "Genetic variability and evolution of Rice stripe virus"; RL Unpublished. XX RN [3] RP 1-2482 RA Huang L., Rao L., Wu J.; RT ; RL Submitted (16-APR-2012) to the INSDC. RL State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang RL University, Hangzhou, Zhejiang 310058, China XX DR MD5; 89a14938986e7b9840069e2c5f24dcfe. DR EuropePMC; PMC3460854; 23029445. DR EuropePMC; PMC6454316; 30932379. XX CC GenBank Accession Numbers JQ927415, JQ927421, JQ927427, JQ927433 CC represent the complete genome of Rice stripe virus isolate HuZ10. CC CC ##Assembly-Data-START## CC Assembly Method :: SeqMan II v. 5.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2482 FT /organism="Tenuivirus oryzaclavatae" FT /segment="3" FT /host="rice" FT /isolate="HuZ10" FT /mol_type="genomic RNA" FT /country="China: Zhejiang Province" FT /collection_date="25-Jul-2010" FT /db_xref="taxon:3052763" FT CDS 66..701 FT /codon_start=1 FT /product="NS3 protein" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:I6U4T7" FT /protein_id="AFM93816.1" FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCDDVHCSSRALCYIYD FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPTIMMSSSY FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN FT RKTLYRSPSKKRHKYVISSDKPPLSARYVKYVDSSALEPLPGSSPAVL" FT CDS complement(1422..2390) FT /codon_start=1 FT /product="CP" FT /db_xref="GOA:Q8JRD1" FT /db_xref="InterPro:IPR008864" FT /db_xref="InterPro:IPR009522" FT /db_xref="UniProtKB/TrEMBL:Q8JRD1" FT /protein_id="AFM93817.1" FT /translation="MGTNKPATLADLQKAINDISKDALSYLTAHKADVVTFAGQIEYAG FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR FT YGIVSSVGTNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT FT TGLLVITCKSKNLADKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR FT LYLAQQSKLMKILAENTSKTASEVSGLVKEFFEDEAEGADD" XX SQ Sequence 2482 BP; 765 A; 529 C; 426 G; 762 T; 0 other; acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc cgacatcatc 60 taagtatgaa cgtgttcaca tcgtctgtag gttctgtgga atttgatcat cctctgcttt 120 tggagaatga tctgaccagt ctgagcataa actgtgatga tgtccattgt tcttcaagag 180 ccttatgtta tatatatgac atccattcat ctaggcaccc ctccattgat gagcatcagt 240 ttctgaggct tcttcatggc cctgatgatg ctgtcactct aggctccttc ttgaaaactc 300 tgatctggat tctgtcccat gataagaatc tcccagaaga gtacagactt cctactataa 360 tgatgtcatc ctcatatgtg aagttcttca ctgaagtgaa gccaagaccc ccatcaacaa 420 attgctggac atgcagaatg tccaaagaca atttgccctt taccgttcct agtgtcaagg 480 gatttcctcc agatgcagag ctctacattg tgccaatatc tgaccatgat ggaaagcctg 540 tcaaatttga caataggaag actctatata gatcacctag taagaaaagg cataagtatg 600 tcatttcttc tgataaacca cctcttagtg cacgttatgt caagtacgtt gattctagtg 660 cactagaacc cttaccaggc agctctccag ctgtgctgta gaaataaaag gaaaaaagaa 720 ataaagaaaa tgaaacaaat aatcaaaaaa acacaaaaaa atcttaaaaa tgaaaaacac 780 aaaaaaacta aaaaactaaa aaaacttaaa aaacatcatg acctaaaaaa ctgcacacca 840 ctggttgtct agtgggctct agttggtaga gaaagctatg cttttgccta aagccatgat 900 tggccaatcc ttaaaatgtg ctaagcacat tatccgaaga tgtctcggat gtttttttac 960 ctaacctaat ttttttgtat ttttatataa ttttttgatt tttttgtatt ttatatacat 1020 atttttgatt ttttgatttt tttgtttttt taatattttt tctactaatt gctacattaa 1080 tatatttaat tattcatata cttaaaatat atagtatgta ttataaaaat agagcaatat 1140 aataaggcta gtataactac attacaaaca tatatctaaa tatttagata gacttatcaa 1200 actaaaggct ctactagaga gtgaacaata ataatggcaa tacatcacac acaaagccca 1260 aaaccacaca gacacaataa cttatggaat ataattaaaa actaaaatat acacatatta 1320 aatatacata ttaacttaca cctaaagaaa caacacactg tttgaagaca tgcatcttcc 1380 agggagatat gagatccctc acaactactg acttgttcag tctagtcatc tgcaccttct 1440 gcctcatcct cgaagaactc cttcaccaac ccgctgactt cagatgctgt ctttgaagtg 1500 ttctcagcaa ggatcttcat cagcttgctc tgttgagcca agtacagcct tgtctgattc 1560 ccataagtgc tgatcgtatt gacagacata ccagccagcg catcgaagat tgtggtcttc 1620 actttcccat tggtgatgaa ttcatctaag accttctttc tgccatcttc cttcttcttg 1680 tcagccaggt tctttgactt gcatgtgatg accaggagac cagttgtgta cttcatcatg 1740 tctatgtctt ttgtcagacc acgctccttc ttcttaccct ctggcatggt ctttttggtt 1800 atttggaagg agtgaatgat gtgcacaaca aacaaaatat gacttaggga gtgagttgtg 1860 cagtaaggag ctgtttcact ctccagttta atatattgtg gaacatagtc ccacagtaag 1920 ttgtcacatc ctgttagtcc caggtcagaa gagtccacag ccatcttaac accagaaatt 1980 tgtctcacaa cttcatgtga gacatttggg aatagctgag ccagccttcc aagtgtgatg 2040 gcattggcat ttgttcccac cgaggacact atcccatacc tcgacaccaa ggtcgaagcc 2100 tcagtgcttc cagccgccac tttcactttc ttagtgacat ctctcacaaa gccagtacct 2160 ctcacatatc tcatggtgat gcacatagtc atatccttgg ccagtgtgtc accacctttg 2220 tccttcaata tgccaatcag agttgcagca tcatagcctg catactctat ctgaccagca 2280 aaggtcacaa catcagcttt atgagcagtc aggtaagaca acgcatcttt ggagatgtca 2340 ttgattgcct tctgcaaatc agctagagtg gctggcttgt tggtgcccat tgtagcaaga 2400 ggtactggag gaatggttgc ggcttagatg aaatttggaa tgtaaaagca aaatcgaaaa 2460 ttttattacc cagactttgt gt 2482 //