ID JQ927420; SV 1; linear; genomic RNA; STD; VRL; 2489 BP. XX AC JQ927420; XX DT 03-JUL-2012 (Rel. 113, Created) DT 05-AUG-2023 (Rel. 144, Last updated, Version 2) XX DE Rice stripe virus isolate DaL08 segment 3, complete sequence. XX KW . XX OS Tenuivirus oryzaclavatae OC Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina; OC Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus. XX RN [1] RP 1-2489 RA Huang L., Rao L., Wu J.; RT "Genetic variability and evolution of Rice stripe virus"; RL Unpublished. XX RN [2] RP 1-2489 RA Huang L., Rao L., Wu J.; RT ; RL Submitted (16-APR-2012) to the INSDC. RL State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang RL University, Hangzhou, Zhejiang 310058, China XX DR MD5; 1d63e914c9ec9a35ebc408e9181fc88a. XX CC GenBank Accession Numbers JQ927414, JQ927420, JQ927426, JQ927432 CC represent the complete genome of Rice stripe virus isolate DaL08. CC CC ##Assembly-Data-START## CC Assembly Method :: SeqMan II v. 5.01 CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2489 FT /organism="Tenuivirus oryzaclavatae" FT /segment="3" FT /host="rice" FT /isolate="DaL08" FT /mol_type="genomic RNA" FT /country="China: Yunnan Province" FT /collection_date="01-Jul-2008" FT /db_xref="taxon:3052763" FT CDS 66..701 FT /codon_start=1 FT /product="NS3 protein" FT /db_xref="InterPro:IPR007974" FT /db_xref="UniProtKB/TrEMBL:B7VCB0" FT /protein_id="AFM93823.1" FT /translation="MNVFTSSVGSVEFDHPLLLENDLTSLSINCEDVHCSSRALCYIYD FT IHSSRHPSIDEHQFLRLLHGPDDAVTLGSFLKTLIWILSHDKNLPEEYRLPAIMMSSSY FT VKFFTEVKPRPPSTNCWTCRMSKDNLPFTVPSVKGFPPDAELYIVPISDHDGKPVKFDN FT RKTLYRSPSKKKHKYVISSDKPPLSARYVKYVDSSALGPSPGSSPAVL" FT CDS complement(1429..2397) FT /codon_start=1 FT /product="CP" FT /db_xref="GOA:B5B638" FT /db_xref="InterPro:IPR008864" FT /db_xref="InterPro:IPR009522" FT /db_xref="UniProtKB/TrEMBL:B5B638" FT /protein_id="AFM93824.1" FT /translation="MGTNKPTTLADLQKAINDISKDALNYLTAHKADVVTFAGQIEYAG FT YDAATLIGILKDKGGDTLAKDMTMCITMRYVRGTGFVRDVTKKVKVAAGSTEASTLVSR FT YGIVSSVGSNANAITLGRLAQLFPNVSHEVVRQISGVKMAVDSSDLGLTGCDNLLWDYV FT PQYIKLESETAPYCTTHSLSHILFVVHIIHSFQITKKTMPEGKKKERGLTKDIDMMKYT FT TGLLVITCKSKNLIDKKKEDGRKKVLDEFITNGKVKTTIFDALAGMSVNTISTYGNQTR FT LYLAQQSKLMKILAENTSKTATEVSGLVKEFFEDEAEGADD" XX SQ Sequence 2489 BP; 751 A; 539 C; 429 G; 770 T; 0 other; acacaaagtc ctgggtaaaa tagttatatt tttactatac aatacaattc cgacatcatc 60 taagcatgaa cgtgtttaca tcgtctgtag gttctgtgga atttgatcat cctctacttt 120 tggagaatga tctgaccagt ttgagcatca actgtgaaga tgtccactgc tcttcaagag 180 ctttatgtta tatatatgac atccattcat ctaggcaccc ctccattgat gagcatcagt 240 ttctgaggct tctccatggc cctgatgatg ctgtcactct aggctctttc ttgaaaactc 300 tgatctggat tctgtcccat gataagaacc tcccagaaga gtacagactt cctgctataa 360 tgatgtcatc ctcttatgtg aagttcttca ctgaagtgaa gccacgaccc ccatcaacaa 420 attgctggac atgcaggatg tctaaggaca atttgccctt taccgttcct agtgtcaagg 480 gatttcctcc agatgctgag ctttacattg tgccaatatc tgaccatgat ggaaagcctg 540 tcaaatttga caataggaag actctatata gatcacctag taagaaaaag cataagtatg 600 tcatttcttc agataaacca ccacttagtg cacgttatgt taagtacgta gattctagtg 660 cactaggacc atcaccaggc agctctccag ctgtgctgta gaaataaaga agagaagaga 720 aggaaaatta aaacaaaaaa acaaaaaaac aaaaaaacaa caaaaaaatc ttaaaaataa 780 aaaactcaaa aaaactaaaa aactggaaaa caccataatc taaaaacata cacaccactg 840 gctgtctggt ggactctagt tggtagagaa agctatgctt ttgcctaaag ccatgattgg 900 ccaatcctta aaatgtgcta agcacattat ccgaggatgt ctcggatgtt tttttaccta 960 acctaatttt tttgtatttt tttatgtttt ttgatttttt tgttttttat atacatattt 1020 ctgatttttt tgtttttttg attttttcat ttttattctt aatatatatc cttctagtta 1080 ctacatttac atatttactt agtcatatac ttacatatat agtatatatc ataaaataga 1140 gcaatacaat aaacctaata tcactatatt acaagcttac atcttaatat ttagatagac 1200 ttatcaaact aaagactcta ttagagagtg agcaataatg atagcaatac atcatacaca 1260 aagcccaaca ccacacagat aaaataactt atagaatata ctcaaaaact aaaatataca 1320 tgttatatat acacatatta ccttacactt aaagaaacaa cacactgttt gaagacatgc 1380 gtcttctagg gagatatgag atccccaaca actgctgacc tgctctgtct agtcatctgc 1440 accttctgcc tcatcctcga agaattcctt caccaacccg ctgacttctg ttgctgtctt 1500 tgaagtgttc tcagcaagga tcttcatcag cttgctctgt tgagccaaat acagcctggt 1560 ctggttccca tatgtactga tcgtattgac agacatacca gccagtgcat cgaagattgt 1620 ggtcttcact tttccattgg tgatgaattc atctaacacc ttctttctac catcttcctt 1680 cttcttgtca atcaagttct ttgacttgca tgtgatgacc aggagaccag ttgtgtactt 1740 catcatgtct atgtcctttg tcagaccacg ctccttcttc ttaccctctg gcatggtctt 1800 tttagttatt tggaaggagt gaatgatgtg cacaacaaac aagatgtgac taagggagtg 1860 agttgtgcag taaggagctg tttcactctc cagtttaatg tactgtggaa catagtccca 1920 cagtaggttg tcacatcctg tcagccccag atcagaagag tcaacagcca tcttaacacc 1980 agaaatttgt cgcacaacct catgtgagac atttgggaat agctgggcca accttccaag 2040 tgtgatggca ttggcatttg atcccaccga agacactatc ccataccttg ataccaaggt 2100 tgaagcctct gtgcttccag ccgccacttt cactttcttt gtgacatctc tcacaaagcc 2160 agtgcctctc acatatctca tggtgatgca catagtcata tccttggcca gtgtgtcacc 2220 acccttgtcc ttcaatatgc caatcagagt tgcagcatca tagccagcat actcgatctg 2280 accagcaaaa gtcacaacat cagctttatg agcagtcagg taattcaacg catctttgga 2340 gatgtcattg attgccttct gcaaatcagc tagagtggtt ggcttgttgg tgcccattgt 2400 agcaagaggt actggaggaa tggttgcggc ttagatgaaa tttggaatgt aaaagcaaaa 2460 tcgaaaattt tattacccag actttgtgt 2489 //