ID   JQ927415; SV 1; linear; genomic RNA; STD; VRL; 2157 BP.
XX
AC   JQ927415;
XX
DT   03-JUL-2012 (Rel. 113, Created)
DT   05-AUG-2023 (Rel. 144, Last updated, Version 3)
XX
DE   Rice stripe virus isolate HuZ10 segment 4, complete sequence.
XX
KW   .
XX
OS   Tenuivirus oryzaclavatae
OC   Viruses; Riboviria; Orthornavirae; Negarnaviricota; Polyploviricotina;
OC   Ellioviricetes; Bunyavirales; Phenuiviridae; Tenuivirus.
XX
RN   [1]
RC   Publication Status: Online-Only
RP   1-2157
RX   PUBMED; 23029445.
RA   Xu Y., Huang L., Fu S., Wu J., Zhou X.;
RT   "Population Diversity of Rice Stripe Virus-Derived siRNAs in Three
RT   Different Hosts and RNAi-Based Antiviral Immunity in Laodelphgax
RT   striatellus";
RL   PLoS One 7(9):E46238(2012).
XX
RN   [2]
RP   1-2157
RA   Huang L., Rao L., Wu J.;
RT   "Genetic variability and evolution of Rice stripe virus";
RL   Unpublished.
XX
RN   [3]
RP   1-2157
RA   Huang L., Rao L., Wu J.;
RT   ;
RL   Submitted (16-APR-2012) to the INSDC.
RL   State Key Laboratory of Rice Biology, Institute of Biotechnology, Zhejiang
RL   University, Hangzhou, Zhejiang 310058, China
XX
DR   MD5; f70c6ce84814b946c230b37f267d2b32.
DR   EuropePMC; PMC3460854; 23029445.
XX
CC   GenBank Accession Numbers JQ927415, JQ927421, JQ927427, JQ927433
CC   represent the complete genome of Rice stripe virus isolate HuZ10.
CC   
CC   ##Assembly-Data-START##
CC   Assembly Method       :: SeqMan II v. 5.01
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2157
FT                   /organism="Tenuivirus oryzaclavatae"
FT                   /segment="4"
FT                   /host="rice"
FT                   /isolate="HuZ10"
FT                   /mol_type="genomic RNA"
FT                   /country="China: Zhejiang Province"
FT                   /collection_date="25-Jul-2010"
FT                   /db_xref="taxon:3052763"
FT   CDS             55..591
FT                   /codon_start=1
FT                   /product="SP protein"
FT                   /db_xref="InterPro:IPR006960"
FT                   /db_xref="UniProtKB/TrEMBL:Q52R45"
FT                   /protein_id="AFM93814.1"
FT                   /translation="MQDVQRTVEVSVGPIVGLDYTLLYDTLPETVSDNITLPDLKDPER
FT                   VTEDTKKLILKGCVYIAYHHPLETDTLFIKVHKHIPEFCHSFLSHLLGGEDDDNALIDI
FT                   GLFFNMLQPSLGGWITKNFLRHPNRMSKDQIKMLLDQIIKMAKAESSDTEEYEKVWKKM
FT                   PTYFESIIQPLLHKT"
FT   CDS             complement(1246..2106)
FT                   /codon_start=1
FT                   /product="MP"
FT                   /db_xref="GOA:B5B668"
FT                   /db_xref="InterPro:IPR004980"
FT                   /db_xref="UniProtKB/TrEMBL:B5B668"
FT                   /protein_id="AFM93815.1"
FT                   /translation="MALSRLLSTSKSKVLYDDLSEESQKRVDNKNRKSLALSKRPLNQG
FT                   RVTIDQAATMLGLEPFSFSDVKVNKYDMFIAKQDYSVKAHRKATFNILVDPYWFHQPLT
FT                   HYPFFRVATFAMVWIGIKGRASGITTLRIIDKSYVNSSDQVEVEVRYPISKNFAVLGSL
FT                   ANFLALEDKHNLQVSVSVDDSSVQNCVISRTLWFWGIERTDLPVSMKTNDTVMFEFEPL
FT                   EDKAINHLSSFSNFTTNVVQKAVGGAFTSKSFPELDTEKEFGVVKQPKKIPITKKSKSE
FT                   VSVIM"
XX
SQ   Sequence 2157 BP; 693 A; 442 C; 404 G; 618 T; 0 other;
     acacaaagtc cagggcattt gtgcaacgat ccagcaaatt aatcagaatc gaagatgcaa        60
     gacgtacaaa ggacagtaga agtttctgtt ggtcctattg taggcctaga ttacactcta       120
     ttgtatgaca ctctgcccga gactgttagc gataacatta ctctacctga tttgaaagat       180
     ccagagagag tcacggaaga tactaagaag ctaatactca aaggctgtgt ttacatagca       240
     tatcatcacc ccttggagac tgacaccctt ttcatcaaag ttcacaaaca tataccagag       300
     ttttgtcact cattcctatc acacctttta ggaggtgaag atgatgacaa tgctcttata       360
     gacattggtc tgtttttcaa catgttgcaa ccctctttgg gcggttggat aaccaagaat       420
     tttcttagac accctaatag aatgtctaag gaccaaatta aaatgctcct ggatcagatt       480
     atcaagatgg ctaaggctga gagctcagac acagaagagt atgagaaagt gtggaagaag       540
     atgccaactt attttgaatc aattatccaa cctcttctac acaaaacata gtttattgca       600
     catcacaatt ttcacccacg agtgcttgca ttctagaagt ggagccagtt tgggttgacc       660
     ttcttatatg aaaatacgag tatatattat aatctaaaca atatacatga tgtttgtcta       720
     attaggcttg acagtttgta aatgattgtg tgtgattgtg cgtgtgtgta tatatgttaa       780
     tatataactg tgcacaggtg tgtagatatg aacacttgaa acaaataaat taatatattc       840
     ctatcaaccc atatgcatac ttgtgagtct tagctcctct atatacacac atagaaacat       900
     gagagtatca tacaagacac actgcaaaaa tactaacaac tttattttac aatgtcaaaa       960
     ctgaaaactg aaataccaaa aacatgaaaa aatagaaaat caaaaacaat gaatggtgct      1020
     aagcaccaca tccggatgtg gtgcgtagca ccattttcat aacattaatc tataacctac      1080
     tagtggcaaa aacacctata tgcatgtagt gcatagcact ctcttatgaa ttgactacga      1140
     tgattacgtg aatgcatagc attctcctga aaaaagcaga gcagaacaga ccacataaag      1200
     tgcgtagcac tagatgttag catactccgg aactggttat ctcacctaca tgatgacaga      1260
     aacttcagat tttgatttct ttgtgatggg tatcttcttt ggctgcttca ccacaccgaa      1320
     ctccttctca gtgtctagct cagggaagct cttgctggtg aaagcacctc caacagcttt      1380
     ctgaacaaca ttagtcgtaa aattgctgaa gctggacaaa tggtttatag ccttatcttc      1440
     tagtggttca aactcaaaca tcacagtgtc attggtcttc atggacactg gcagatcagt      1500
     cctctcaatc ccccagaacc aaagagttct agagatgaca caattctgca ctgagctgtc      1560
     atcaacagat acggacactt gaagattatg cttatcctcc aaagccagaa aattcgctag      1620
     agaacccaag acagcaaaat tcttgctaat tgggtagcga acctctacct caacttgatc      1680
     tgaggagttc acataggact tgtctattat gcggagggtt gttattccac tagctctgcc      1740
     cttaattcca atccagacca tagcaaaagt tgccactcta aagaatgggt aatgggtgag      1800
     aggttgatga aaccaatatg gatcaacaag tatgttgaaa gttgctttcc tatgggcctt      1860
     cacagaatag tcctgtttgg ctatgaacat atcatacttg ttcaccttga catctgagaa      1920
     actgaagggt tccaatccaa gcattgtggc agcttggtca attgtgaccc taccctggtt      1980
     cagaggcctc ttggagagag ctagagattt cctattctta ttatcaactc tcttttggga      2040
     ctcctcacta aggtcatcat agagtacctt actttttgaa gtggacaaaa gtcgagacaa      2100
     agccataatt aaagtatata ttagcttaat ctcaaaagat atgccctgac tttgtgt         2157
//