ID   JQ927009; SV 1; linear; genomic RNA; STD; VRL; 1785 BP.
XX
AC   JQ927009;
XX
DT   03-JUL-2012 (Rel. 113, Created)
DT   03-JUL-2012 (Rel. 113, Last updated, Version 1)
XX
DE   Southern rice black-streaked dwarf virus isolate JXnch10 capsid protein
DE   gene, complete cds.
XX
KW   .
XX
OS   Southern rice black-streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1785
RA   Sun X., Zhu C.;
RT   "Detection of Southern rice black streaked dwarf virus (SRBSDV) in rice in
RT   Jiangxi Province";
RL   Unpublished.
XX
RN   [2]
RP   1-1785
RA   Sun X., Zhu C.;
RT   ;
RL   Submitted (11-APR-2012) to the INSDC.
RL   Education Key Laboratory of Crop Physiology, Ecology, Genetics, and
RL   Breeding, College of Agriculture, Jiangxi Agricultural University, Zhimin
RL   Road, Nanchang, Jiangxi 330045, China
XX
DR   MD5; b8bbd584dd2265880b405b004cb062d4.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1785
FT                   /organism="Southern rice black-streaked dwarf virus"
FT                   /host="rice"
FT                   /isolate="JXnch10"
FT                   /mol_type="genomic RNA"
FT                   /country="China"
FT                   /collection_date="Oct-2011"
FT                   /PCR_primers="fwd_name: s10-f, fwd_seq:
FT                   aagtttttttcctcatcca, rev_name: s10-r, rev_seq:
FT                   tttccccctagccgtcgtcact"
FT                   /db_xref="taxon:519497"
FT   CDS             22..1695
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="P10"
FT                   /db_xref="InterPro:IPR008618"
FT                   /db_xref="UniProtKB/TrEMBL:I6U9Z9"
FT                   /protein_id="AFM97295.1"
FT                   /translation="MADIRLDIAPDLIHNGVPQRLSDTIILNNRPTITLLSHFNSLFHE
FT                   SNIVKSPHIASSQTTVNLYIRKHLLTRLHDRLQTVETSTLPNITQLKEHIQSYFRNEHQ
FT                   PIFQTLTNNNLSDEFLGVTTFGLSLFATSKLDAEQIERVQIETLTEGNVTLKPFSADGL
FT                   EVILDDSYIGIIGKISGLEVHKLLDKCCREVPAQMGILTDEVKLLIRSGKLRIDGGYDF
FT                   NCPASTTDVTHYGGYDQYSRQMFEKLNLFFNISLSIIPVSALKTIHVFEKELSALDADK
FT                   SLLEQTWSGVSSFIETWKVKTKAKDEDQDEYELTGLSALRKGVDGNSVSSPYNDKKFIE
FT                   WYSKTFAKIEKGSSLRKTEIEDKNTSGTSNITKQVKIHFPVQYFDEVKSNGHEKSVTVI
FT                   TNKGEMSLESYRKIGEILSAIWKRGKALAAPCIDYIKLGVEKAYHLAPVIMKKYNLTID
FT                   DIIHFIEIGPSYLAKLDKIDDWSLIAKLIITSVLPNIIQAVYKTDPSNNVMNSVIISRA
FT                   NNLLKADRDRLIKKATTANSPTSNSNSEHGQKIVLNKVTR"
XX
SQ   Sequence 1785 BP; 615 A; 320 C; 312 G; 538 T; 0 other;
     aagttttttt cctcatccat aatggctgac ataagacttg acatagcgcc cgatcttatc        60
     cataatggtg tgcctcaaag actttcagat acgataattc taaacaaccg accaacaatc       120
     acacttctgt ctcacttcaa ctctcttttt cacgaatcaa atattgttaa atcaccccac       180
     atcgcgtcat ctcaaactac agttaattta tacattcgta agcatttact gactcgactt       240
     catgatagat tacaaactgt cgaaaccagt actctaccga acattactca acttaaagaa       300
     catattcaaa gttatttccg taatgaacat caacctattt ttcaaaccct gactaacaat       360
     aatcttagtg atgaattttt aggtgtaact acttttggtt taagtttatt cgcaacttcg       420
     aagttggatg cagaacaaat agaacgagta caaattgaga ccctaactga aggaaacgtt       480
     acacttaaac ctttctccgc tgacggttta gaagtaattt tagatgatag ttacatcgga       540
     ataattggaa aaatttctgg tttagaagta cataaattac tcgataaatg ttgtcgtgaa       600
     gttcctgctc aaatgggaat attaactgac gaagttaaac ttttaatacg ttccggaaaa       660
     ttaagaattg acggtggata cgatttcaat tgtcctgcta gtacaacaga cgtgacacac       720
     tatggcggtt acgaccaata ttcgagacaa atgtttgaaa aattgaattt gttctttaac       780
     atcagtttga gcattattcc tgtttctgca cttaaaacta ttcatgtatt tgagaaagaa       840
     ctaagcgctt tagatgctga caaatcactt ttagaacaaa catggagcgg agtctcctca       900
     tttattgaaa catggaaagt aaaaactaaa gctaaagatg aagatcaaga tgagtacgaa       960
     ctaactggac tgtctgcact tagaaaagga gtcgatggca attctgtatc tagcccttac      1020
     aatgataaga aattcatcga atggtattct aagacgtttg ctaaaataga gaaaggttca      1080
     tcgttgcgta agaccgaaat tgaagacaaa aatacatccg gcacctcaaa cataacaaag      1140
     caagttaaaa ttcattttcc tgttcagtat ttcgatgaag tcaaatctaa cggtcatgaa      1200
     aaaagtgtta ctgtaatcac taataaaggt gaaatgtcat tggaatctta ccgaaagata      1260
     ggtgaaatat taagtgcgat ctggaaacgt ggcaaggcat tagctgctcc ctgcatcgat      1320
     tacatcaaac ttggcgtcga aaaagcttat catttagctc ctgtaatcat gaagaaatat      1380
     aatttaacta ttgatgatat aattcatttt attgaaattg gtccttcata cttagcgaaa      1440
     ttggataaaa ttgatgattg gtccttaatt gcaaaattga ttattaccag tgttttgcca      1500
     aacatcattc aagcggtgta taaaacagat cctagcaata atgttatgaa ttcagttatt      1560
     attagcagag ccaacaattt attgaaggcg gatcgcgatc gtttaattaa gaaagctacc      1620
     actgcaaatt cacctaccag taattcaaat tcagaacatg gtcaaaagat tgtgttaaat      1680
     aaagtcacca gatgataatt gaggtttcat cattagcgcg actagttcag tgctgtgtgg      1740
     tcttcagttc attatcgacg ccgagtgacg acggctaggg ggaaa                      1785
//