ID JQ926983; SV 1; circular; genomic DNA; STD; VRL; 7757 BP. XX AC JQ926983; XX DT 21-AUG-2012 (Rel. 113, Created) DT 21-AUG-2012 (Rel. 113, Last updated, Version 1) XX DE Soybean mild mottle pararetrovirus, complete genome. XX KW . XX OS Soybean Putnam virus OC Viruses; Ortervirales; Caulimoviridae; Caulimovirus. XX RN [1] RP 1-7757 RX DOI; 10.1128/JVI.01558-12. RX PUBMED; 22879623. RA Han J., Domier L.L., Dorrance A., Qu F.; RT "Complete genome sequence of a novel pararetrovirus isolated from soybean"; RL J. Virol. 86(17):9555-9555(2012). XX RN [2] RP 1-7757 RA Han J., Domier L.L., Dorrance A., Qu F.; RT ; RL Submitted (11-APR-2012) to the INSDC. RL Department of Plant Pathology, The Ohio State University, 024 Selby Hall, RL 1680 Madison Ave., Wooster, OH 44691, USA XX DR MD5; f020fad6c584374bcdb475643f9e839e. DR EuropePMC; PMC3416149; 22879623. DR EuropePMC; PMC3569392. DR EuropePMC; PMC3570808. DR EuropePMC; PMC5052798; 27716385. XX FH Key Location/Qualifiers FH FT source 1..7757 FT /organism="Soybean Putnam virus" FT /host="soybean" FT /mol_type="genomic DNA" FT /country="USA" FT /collection_date="Aug-2011" FT /db_xref="taxon:1221449" FT CDS 605..1552 FT /codon_start=1 FT /product="movement protein" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:J7HA40" FT /protein_id="AFP95346.1" FT /translation="MNTVSVDHDSGSEEQAQITFNESSKGFDASLLIKQSVLSRINKTN FT LSLNKNDVFKIPSLGFLKRKNEVYYYVSTKEIHVDIKDTKGTVYLPFITKEEVNTNLQK FT IKSEVRSKISTVHLGAIKVLIKASFQAGIDSPIKMAIIDNRINDRKDCILGAARGNLCY FT QKFMFTVYPKFEISINTKNLDQVLSFIHHFERENLMNSGDKVFSLTYVVGYALSNSVHS FT IDYKHKEYIEIDQVFSDIGHVEEKQFSDISPIEDTWALDIAQNKGRLGQGPIRSIRGNT FT MHIGSTSRPKDISLVDISKQIDEFGKTLKTLSET" FT CDS 1554..2078 FT /codon_start=1 FT /product="aphid transmission factor" FT /db_xref="GOA:J7H6U5" FT /db_xref="InterPro:IPR004917" FT /db_xref="UniProtKB/TrEMBL:J7H6U5" FT /protein_id="AFP95347.1" FT /translation="MVPPNTNEATQMPHIYKKGRILKFKKLNEGIDRTNRKYLFSSHGS FT GIQTVVNHCNNLNQVVARNFLQLAKLLSYFGLSKDPSEDYSKDPSVFKRFFKDLPSTSF FT KKGGDKKDKNEILEKLTSLIEKQGTKLRDLESKIDNFVKNDASKDDIKDLRIDVRRRLD FT SIDESLKKIIG" FT CDS 2075..2416 FT /codon_start=1 FT /product="DNA-binding protein" FT /db_xref="GOA:J7HCY4" FT /db_xref="InterPro:IPR004986" FT /db_xref="UniProtKB/TrEMBL:J7HCY4" FT /protein_id="AFP95348.1" FT /translation="MSLAEIQKAIDQVKRLAEQIEKLLESSKTIVEASSAKVIQDITSK FT LEECHCNKEILDALKSHDSKEKPETQIVNSDKSPSTSSLQKYSFPNEYVGNAELGSSGN FT PNAIVFPRR" FT CDS 2413..3909 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:J7H710" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR001988" FT /db_xref="InterPro:IPR036875" FT /db_xref="UniProtKB/TrEMBL:J7H710" FT /protein_id="AFP95349.1" FT /translation="MTNYYRNVEEFFWNNWEDDDLKVNDDNFALLEQAITLMELNDEVR FT ANQIIEQSDYLRSAFGPKQESILIIEEQSEPSDWESDIGSFNSETTNDFVQRNTQPRFR FT MNPNSEVKTELDDIPESSRDGATRNKRPRNIFNEPPKPNHGAFGIFTLNLDCNKDRKRD FT ISVWLNEISLLIQTQPEAFDTPEKVILLAEHKSSGNLNRYLKNVSWRTQGITPVNTLNI FT IAQAVYLAFLGLDYVEDGKKEAKDIKNKAEERMTKMTLCDICYLETFYCDYEKAFYELQ FT EVDETLKYVQLYLRKIPIVGEIARTRYEAESNSYTKQSLAYAHRLVKEEITKICSLSKT FT QKKLKKFNKSCCPKLVDDLTLDYGCKVKSKRKVFKYEKKRSSKHKRFQKRYVKKSFKPS FT KFARKPSKNPSKEKFCPKGKKNCRCWICSEEGHYANECPNKENNKKQFKMFQEVLSQGL FT VPIEEPYEHEHHVFEFFEEPPDSDGTTEYSSSESSGSDSE" FT CDS 3806..5905 FT /codon_start=1 FT /product="reverse transcriptase" FT /db_xref="GOA:J7HDV8" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR000588" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:J7HDV8" FT /protein_id="AFP95350.1" FT /translation="MNMNTMFLSSLKNPQIQMEQLSIHLQNHQVQIQNNSEMNYLNSTN FT PNSIYVKGILKFSGYKQLELHCFVDTGASMCVASKHVIPEEHWENSSRHISVKTANGLV FT TLTKVCKNVKIMLAGELFHIPTIYQQEVEIDLILGNNILQLHEPFVQFTDRIIIHKDGE FT PVTIGKVFKAYYHGKPGYLESMKKNSKKPVPSPLNITPVKIEEQETLRLQLLRRGREIV FT TQKLFSIQQDHLSKIHNLLDRVCSENPIDPEKSKRWMTASIKLKDPNTIVKVKPMQYNP FT DDRMEFSKQIKELLDLKIIIPSKSPHQSPAFLVENEAERRRGKKRMVVNYKKINEATIG FT DSHNLPNKDELLTLIRGKTIYSSFDCKSGFWQVFLDQESQLLTAFTCPSGHYQWRVVPF FT GLKQAPSIFQRHMQNAFRSFEKFCCVYVDDILVFSDNEQDHHRHVMALLQRCNQLGIIL FT SKKKAQLFQEKINFLGLEIDQGSHKPQNHILEHIHKFPDKIEDKKQLQRFLGILTYASD FT YIPKLAEIRKPLQSKLKKDVPWTWTHDDINYMSKIKKNLKSFPTLYHPKLTDTLIIETD FT ASGSFWGGILKARTENSDSELICRYTSGSFKAAELNYHSNEKEILAVMNTIKKFTGYLT FT PVKFLIRTDNKNFTHFLKINLKGDYKQGRLVRWQMWFSRYVFEVEHLSGDKNVFADFLT FT REFHY" FT CDS 6017..7621 FT /codon_start=1 FT /product="transcriptional transactivator" FT /db_xref="InterPro:IPR009027" FT /db_xref="InterPro:IPR011320" FT /db_xref="InterPro:IPR037056" FT /db_xref="UniProtKB/TrEMBL:J7HA45" FT /protein_id="AFP95351.1" FT /translation="MESSESLKLKIAIMEQELKLMKMRLEYNLLVEQKSSITLDSQSPN FT EQAGILPKNTIVSSSTQQKDKTIPSTNAGKQIVSSPEQTATGKDKSNPLTAEALPKSLN FT QTQSSRLISETVNLRPNQGLKIERIQDDEFQTPKPNTKTQHYYYVVFNGANAGIYEDWE FT TAKTAVNGVPNVKHKKYRSLLEATTAAKLFAKDNFCAEAKLINSSDCLKPNTFCEALKQ FT GKKTKVSLGRPVQQSTVQKSSNDQDQEEPLCARGFEYWYLEGRRASESKLIEERFFTTD FT NANVSYFNFLKNSHPDQVYEAFRYGLVRMIYPSNNLQELKSFPKGFVSAIKKFRIKTSK FT DSGKTDRDVFVKVLSSIPAFDESGVMLHEPHHVIQIGFSKGEKYSPSKVMPSRVEKKDF FT PELAKAKFSNLLDKVYDFQDEDRIFVNYTDSRILLFSKGSKPIGKEDIRCILQFQQQVT FT RQDIFKMHFEDICSMIKDKVGPAHCCPLCKATDAIKRSLMVGPTITTSTSSTRDESFKV FT DGPVFLPAGPIDFLEEE" XX SQ Sequence 7757 BP; 2761 A; 1432 C; 1403 G; 2161 T; 0 other; tatataagga agttcaattc atttgtttag gacatcgaac acacacatcg aattcacaca 60 tcgaatgctc acctcccact ctctctctct aaaatttgta tctctctagc catgagcgag 120 taaaacccat tcttggggat gaaagcctag acctctgtaa tatgtttgta agcaataaaa 180 tatagttttg gtatcccctc ttctatcatg tattctctta tgtcttatca acaattgttc 240 tgaatagcgc accgtctgat accgaagaag taccgccgag gcaggaggcc gttagggaag 300 aagtaggtga caaagcgttg agcagattga gaacgacaac agagatacag tgtaagtcga 360 aggtacagat acaaaacgta tatttgagct tataaactag atattacatg ttaaaaggat 420 ctttcatctc taagaactca aaaaattata aatttttaca atttataaac caaaaactta 480 tgttttacaa actaatgatt tttatcatat caaggattta tatccaacaa acgatagact 540 cagttcatta cttttgtcta aattaaaggt ttttaaccag tatccgcaat ttggtatcag 600 agccatgaat acagtttctg tagaccatga ctcaggttct gaagaacaag cacaaatcac 660 tttcaatgaa agttctaagg gatttgatgc cagtttgtta atcaaacaat ctgttttatc 720 taggattaat aaaactaatc ttagcttaaa caaaaatgat gttttcaaaa tacctagctt 780 aggctttttg aaacgcaaaa acgaagtata ctattatgtt agcacgaaag agattcatgt 840 tgacataaag gatacaaaag gtactgtcta cttacccttt attactaaag aggaagtaaa 900 cactaaccta caaaagatta aatctgaagt tagatctaaa atctcaactg ttcatcttgg 960 agcaattaag gttttaatta aagcttcatt tcaagcaggt atcgatagtc caattaaaat 1020 ggcaattatc gataacagaa ttaatgatcg aaaagattgc atcctaggtg ctgctagagg 1080 caatctttgc tatcagaaat tcatgtttac tgtttatccc aagtttgaga taagcataaa 1140 caccaagaac ttagatcaag ttctatcctt cattcatcat tttgaacgtg aaaatttgat 1200 gaattctgga gataaagtct tctcattaac ttatgttgtg ggatacgctt tgagcaatag 1260 tgtccattct attgactaca aacacaaaga atacattgag atagatcaag tattctctga 1320 catcggccat gtagaagaga agcaattctc tgatatatca ccaatagagg acacctgggc 1380 tctcgacata gcccaaaaca aaggacgatt aggccaaggc ccaattagat ccataagagg 1440 aaataccatg catattggta gtacctctag gccaaaagat atatcccttg tagatatatc 1500 aaaacaaatt gatgaatttg gtaaaacctt aaagactctt tcagagactt aaaatggttc 1560 caccaaatac caatgaggcc acccagatgc ctcacatcta caaaaagggt agaatcctta 1620 agtttaagaa attaaatgaa gggatagaca gaacaaatag gaaataccta tttagttccc 1680 atggttcagg gattcaaaca gtggttaacc attgtaacaa tctcaaccaa gtggttgcaa 1740 gaaatttctt gcaattagca aaattattga gttattttgg actcagtaaa gatcctagtg 1800 aagattattc taaagacccc agtgtcttta aaagattctt caaagactta ccatccactt 1860 cttttaagaa ggggggagat aagaaggata aaaacgaaat tctcgaaaaa ctcacgagtt 1920 taatagagaa acaaggaact aagttaagag acttagaatc caaaattgac aattttgtca 1980 aaaacgatgc atctaaagat gacatcaaag acctaagaat agatgttaga agacgcctag 2040 attccataga cgaaagtctt aagaagatta taggatgagt ctagcagaga ttcaaaaggc 2100 cattgaccag gtcaaaagat tggctgaaca aatagaaaaa ctacttgaaa gtagcaaaac 2160 tattgttgaa gcctcttctg caaaggtcat acaagatatt acttctaaat tagaagaatg 2220 tcattgtaac aaagagattc tggatgctct taagagtcac gactcaaaag aaaaaccaga 2280 gactcaaatt gtcaatagtg ataagagccc tagtacctct tcacttcaga aatacagctt 2340 tccaaatgag tatgttggaa atgcagaatt aggttcatct ggaaatccaa acgccattgt 2400 ttttccaaga agatgacaaa ctactacagg aacgtcgaag aattcttctg gaacaactgg 2460 gaagacgacg accttaaggt taatgatgat aactttgccc ttctcgagca agctatcaca 2520 ttaatggaac taaatgatga ggttcgtgca aaccaaatca tagaacaaag tgattacctt 2580 agatccgcgt ttggccccaa acaagaatct attttaatca tagaagaaca atctgaaccc 2640 tctgactggg aatcagacat tggaagtttc aactcagaaa caactaatga ttttgttcag 2700 agaaacaccc aacctagatt taggatgaat ccaaattcag aagtcaaaac tgaattagat 2760 gatattccag aatcatccag ggatggtgca acaaggaata aaaggcctag gaatatcttt 2820 aatgaacctc ctaaacctaa ccacggtgct tttggtatct ttactctcaa tcttgattgt 2880 aataaagatc gaaaaagaga catatcagtc tggcttaatg agattagtct ccttattcag 2940 actcaaccag aggcttttga cacaccagag aaagttatac ttctcgctga gcacaagtct 3000 agtggtaatc ttaatagata cttgaagaat gtatcttgga gaacacaagg gatcacgcct 3060 gttaataccc ttaatatcat cgcacaagcg gtttatttgg cttttcttgg tctagactat 3120 gtcgaagatg gaaagaaaga agccaaagat attaaaaaca aggctgaaga gagaatgaca 3180 aaaatgacac tttgtgatat ttgttatctc gaaaccttct actgtgacta cgagaaagcc 3240 ttctacgagt tacaagaggt agacgaaacc cttaagtacg ttcaactgta ccttaggaaa 3300 attcccattg ttggtgaaat agcaaggact agatacgaag ctgagagcaa ttcttacact 3360 aagcagagtc tagcctatgc acatagattg gtcaaagaag agatcacgaa gatttgtagt 3420 ctctctaaga cacaaaagaa acttaagaaa ttcaataagt cttgctgtcc aaaacttgtt 3480 gatgatctta ctctagatta tggctgcaaa gtcaaatcca agagaaaagt tttcaaatat 3540 gagaagaaaa gatcttctaa gcacaaacgt ttccaaaaac gttatgtaaa gaaatctttt 3600 aaaccaagta aatttgctag gaaaccctct aagaatccta gtaaagagaa attctgcccc 3660 aagggtaaga aaaattgtag atgttggatc tgcagcgaag aaggtcacta tgccaatgag 3720 tgcccaaaca aagagaacaa caagaaacaa ttcaaaatgt ttcaagaagt tctatctcaa 3780 ggcttagtac ctattgagga accttatgaa catgaacacc atgtttttga gttctttgaa 3840 gaacccccag attcagatgg aacaactgag tattcatctt cagaatcatc aggttcagat 3900 tcagaataat tctgagatga attatctgaa ttctactaat cctaattcga tttatgtcaa 3960 gggaattctc aaattctctg ggtataaaca attggaactt cattgttttg tcgacacagg 4020 tgcaagtatg tgtgttgcaa gcaaacacgt aattccagaa gagcactggg aaaacagttc 4080 tagacacatc tctgtcaaaa ctgctaacgg tttggtaacc ctcacaaagg tttgcaaaaa 4140 cgttaaaata atgcttgcag gagaattatt tcatattcct actatttacc agcaggaagt 4200 tgaaatagat ctcatccttg gtaataatat cttacaattg catgagcctt ttgtgcaatt 4260 cacagataga attatcattc acaaagatgg tgaaccagtt accattggta aagtcttcaa 4320 ggcttattat catggtaaac caggttattt agaatctatg aaaaagaatt ctaaaaaacc 4380 agtaccatca ccactaaata ttactccggt aaaaattgaa gaacaagaga cacttagact 4440 tcaactttta aggaggggga gggaaatagt aactcaaaaa ctattttcaa tccaacagga 4500 tcatctaagt aaaattcata atttactaga tagagtttgt tcagaaaatc ctattgaccc 4560 tgaaaagtca aaacgatgga tgactgcatc aatcaaactc aaagatccaa atacaattgt 4620 taaagttaaa cctatgcagt ataatcctga tgaccgcatg gagtttagca aacaaattaa 4680 ggaattactt gatcttaaga tcattattcc aagcaagtca ccacaccagt ctcctgcatt 4740 cttagtcgag aatgaagctg agagacgaag aggtaagaaa cgaatggttg ttaattataa 4800 gaaaattaat gaagcaacca tcggtgatag tcacaatctt cctaataagg atgagcttct 4860 cactcttatt agaggaaaga caatatacag ttcttttgac tgtaagtcag gtttctggca 4920 agtctttcta gatcaagagt cacaactctt aactgcgttt acatgtccct cgggtcatta 4980 ccagtggaga gttgtcccct ttggtttgaa acaagcaccc tcaatctttc aaagacatat 5040 gcaaaatgct tttagaagct ttgaaaagtt ttgttgcgtt tacgttgatg acattcttgt 5100 ctttagcgac aacgaacaag atcatcacag gcacgttatg gctttgctac aacgatgcaa 5160 tcaacttggt ataatacttt ctaagaagaa agcacaatta ttccaagaaa agatcaattt 5220 tctaggttta gaaatagatc aagggtctca taaaccccag aatcatatcc tggaacacat 5280 tcataagttt ccagataaga ttgaagataa aaagcaactt caaagatttc ttggaatctt 5340 gacttatgct tcagattaca ttcctaaact tgctgaaata aggaagccct tacaaagcaa 5400 gcttaagaaa gatgtccctt ggacatggac tcatgatgat ataaattaca tgagcaagat 5460 taaaaagaat ttgaaaagtt ttccaactct ttatcaccct aaattaacag atacattaat 5520 catcgagact gatgcttctg gtagtttctg gggtggaatt cttaaagcaa gaacagaaaa 5580 ttcagattct gaattaatat gtagatatac atctggttca ttcaaagcag ctgaattaaa 5640 ctatcattcc aatgaaaagg aaattctggc tgttatgaat acaattaaga aatttactgg 5700 ttatcttaca cctgtaaaat tcttaatacg aacagataat aagaatttta cccattttct 5760 taaaattaac cttaaaggtg attataagca gggtagatta gtaagatggc aaatgtggtt 5820 ttcaagatat gtttttgaag tcgaacattt gtcaggagac aaaaatgtat ttgcagattt 5880 tctaacccgt gaatttcatt attgatttca ggtctgcact tactaaaggg ttatcccaac 5940 taagaacctt aaccggttca atagagagtt acactctcag ggacgatttg tcctctcttt 6000 tgcaggaaca atagccatgg agtcctctga aagcttaaag cttaagatag ctatcatgga 6060 acaagaactc aagctcatga aaatgagact agagtacaac ctattggttg aacaaaagag 6120 tagcatcact cttgactcac agtcaccaaa tgagcaggct ggtattttgc ctaaaaatac 6180 aatagtgtct tcatcgacac aacaaaagga taaaactatt ccttctacca atgctggtaa 6240 acaaatagtt tctagtccgg agcaaacggc taccggtaaa gacaagtcaa atccgttgac 6300 ggctgaggct ttgcccaaaa gcttaaacca gactcaatcc tcacgattga tttctgaaac 6360 ggtcaacctt agaccaaacc aaggattaaa gattgaaagg attcaagatg atgaatttca 6420 aacccctaag ccaaacacta aaacccagca ttactattat gttgttttta atggtgctaa 6480 tgcaggtatt tacgaagact gggagacagc taaaactgcg gttaatggtg tccccaacgt 6540 caagcacaag aagtatcgat cacttcttga ggccactaca gcagctaagc tttttgctaa 6600 ggataatttc tgtgcagaag ctaagttaat caacagttct gattgcttga agcctaacac 6660 attctgtgaa gcactcaagc aaggcaagaa gaccaaggtg tcacttggaa gaccagtaca 6720 acagtctact gttcaaaaat cttccaatga tcaagatcaa gaagaaccat tatgtgctcg 6780 tggattcgag tactggtatc tagaaggcag aagagcctcc gaatcaaagt tgattgaaga 6840 aagattcttc acaacagata atgcaaacgt tagttatttc aactttctca agaattctca 6900 tcccgatcag gtgtatgaag cattcagata tgggttagtt cgaatgatct atccgagcaa 6960 caacttgcaa gaattaaaat ccttcccaaa gggttttgtt agtgctatca agaagttcag 7020 aatcaagact agcaaagatt ctggtaaaac ggacagagac gtgttcgtta aggttctaag 7080 ttctatacca gcttttgacg aatctggtgt tatgttacat gaacctcacc acgtgatcca 7140 gataggattc tcgaaaggtg aaaaatacag cccttctaag gttatgcctt ccagggttga 7200 aaagaaagat ttccctgaac tagccaaggc caagtttagc aatcttttag acaaagtcta 7260 tgatttccaa gacgaagatc gtattttcgt aaattatacg gattctcgaa tactactctt 7320 ctcaaaggga tcaaaaccaa ttggaaaaga agatatacga tgtatactac aattccaaca 7380 acaggtcaca agacaggata tcttcaagat gcattttgaa gatatttgtt ctatgattaa 7440 agacaaggta ggacccgcac actgctgtcc actttgtaaa gcaacggacg ccattaaaag 7500 gagcttaatg gtaggcccca cgataacgac atccaccagc tccactcgcg acgaatcttt 7560 taaagttgat ggtcccgtct ttttaccagc cggccccatt gatttcttgg aagaggagta 7620 aaggcgcact aaggaaaaga taaaggagat tcgttctact tttcttttcg tccactcaaa 7680 tttcaataat gtaaaagtta gtgacatttg acgtcaggga tgacgcacaa tcccacttat 7740 ccagatcctt ccttgcc 7757 //