ID JQ911766; SV 1; circular; genomic DNA; STD; VRL; 2750 BP. XX AC JQ911766; XX DT 17-APR-2012 (Rel. 112, Created) DT 05-NOV-2014 (Rel. 122, Last updated, Version 5) XX DE Hollyhock yellow vein mosaic virus isolate Alcea rosea:Lucknow, complete DE genome. XX KW . XX OS Hollyhock yellow vein mosaic virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2750 RX DOI; 10.1007/s00705-014-2108-1. RX PUBMED; 24810100. RA Srivastava A., Kumar S., Raj S.K., Pande S.S.; RT "Association of a distinct strain of hollyhock yellow vein mosaic virus and RT Ludwigia leaf distortion betasatellite with yellow vein mosaic disease of RT hollyhock (Alcea rosea) in India"; RL Arch. Virol. 159(10):2711-2715(2014). XX RN [2] RP 1-2750 RA Raj S.K., Srivastava A., Snehi S.K., Kumar S.; RT ; RL Submitted (09-APR-2012) to the INSDC. RL Plant Molecular Virology, CSIR-National Botanical Research Institute, RL Lucknow-226001, Rana Pratap Marg, Lucknow, U. P. 226001, India XX DR MD5; 5bcf0a819eefb5b07219fe4cb2d6fe66. XX FH Key Location/Qualifiers FH FT source 1..2750 FT /organism="Hollyhock yellow vein mosaic virus" FT /host="Alcea rosea L. (hollyhock)" FT /isolate="Alcea rosea:Lucknow" FT /mol_type="genomic DNA" FT /country="India" FT /collection_date="09-Dec-2011" FT /db_xref="taxon:944994" FT gene 131..478 FT /gene="V2" FT CDS 131..478 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:I0C064" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:I0C064" FT /protein_id="AFH68193.1" FT /translation="MWDPLLNEFPETVHGFRCMLAIKYLQLLSEEYSPDRVGYDLIRDL FT ISILRSKNYVEASCRYRHFYPRVESASASELRQPICNPCSCPHCPRHKVSHLGEQAHVS FT EAQNVQDVSKP" FT gene 291..1061 FT /gene="V1" FT CDS 291..1061 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:I0C065" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I0C065" FT /protein_id="AFH68194.1" FT /translation="MSKRPADIVISTPASKVRRRLNFDSPYATRAVVPTVRVTKSRIWA FT NRPMYRKPRMYRMYLSPDVPKGCAGPSVVDAFDAHIDNDFKEFVVCLSDGTTGIGLTHR FT LRLRVCLKSLYFVGKVWMDDNINSWNNTNTVMFWIVRDRRPSGTPNDFQEVFNVYDNEP FT STATVKNDQRDRFQVLRRFQATVTGGQYAAKEQAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKVRSYFYDSVTN" FT gene complement(1064..1468) FT /gene="C3" FT CDS complement(1064..1468) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancer protein" FT /db_xref="GOA:I0C066" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I0C066" FT /protein_id="AFH68195.1" FT /translation="MDLRTGEPITAAQAWSGAYIWDIPNPLYFKILSHEDRPYSSNMDI FT ITVRIQFNYNLRRALGVHKCFLTFRVWTTLHPPTGLFLRVFKTQVLKYLNNLGVISLNS FT IIRAVDHVLYNKIEQTMYVEQSSEIKFDLY" FT gene complement(1161..1613) FT /gene="C2" FT CDS complement(1161..1613) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activator protein" FT /db_xref="GOA:I0C067" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I0C067" FT /protein_id="AFH68196.1" FT /translation="MRSSSPLREHCTQVPIKVQHREAKRRNRGRRVDLECRCPYYLSIN FT CFIHGFTHRGTHHCSSSMEWRLYLGHTKSPLFQDPKPRGPSLLEQHGHNNSQDPIQLQP FT SESSGSAQVFSDLPGLDDLTPSDWSFLKGIQNPSPQISQQSGCNLT" FT gene complement(1510..2601) FT /gene="C1" FT CDS complement(1510..2601) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:I0C068" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I0C068" FT /protein_id="AFH68197.1" FT /translation="MPPAKPFKINAKNYFITYPKCSLTKEDALSQLQNLETPVNKKYIR FT ICREFHENGEPHLHVLIQFEGKYQCKNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYI FT AKDGDILEWGEFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFH FT NLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEEWACENVVDAAARPHRPQSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMRAQRNW FT QSKAMYWKSVQINGRMLPIYLSNPGPNSSYKRILDDGKNPALKIWTVQNAIFVTFEGTL FT YSGSNQGTAQGSEETQQGEESRS" FT gene complement(2142..2450) FT /gene="C4" FT CDS complement(2142..2450) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:I0C069" FT /protein_id="AFH68198.1" FT /translation="MRMGNLIYTCSSSSKANTSAKITDSSTSYPQPGQHISIQIFRELN FT PAPTSSPTSPRTGTFSSGGNFRSMEDLQEEGNRQPMTLTPQHLTREVSQRLLESLRS" XX SQ Sequence 2750 BP; 710 A; 579 C; 627 G; 834 T; 0 other; accggatggc cgcgcgattt ttcatatggg ccccgccact aaatcttgtc tgccaattat 60 atgacgcgct caaagcttaa ataattcccc tcttattata aatacttcct cgctaagttt 120 cagtttgaaa atgtgggatc cacttttaaa cgagttcccc gagacggttc acgggtttcg 180 ttgcatgctt gcgatcaaat acctgcaact gctatctgaa gaatactctc ctgatagggt 240 aggttacgat ttaattcgcg atttaatttc tattttacga tctaagaatt atgtcgaagc 300 gtcctgccga tatcgtcatt tctacccccg cgtcgaaagt gcgtcggcgt ctgaacttcg 360 acagcccata tgcaacccgt gcagttgtcc ccactgtccg cgtcacaaag tctcgcattt 420 gggcgaacag gcccatgtat cggaagccca gaatgtacag gatgtatcta agccctgatg 480 tgcccaaggg ctgtgctggt cctagcgtcg ttgatgcttt cgatgcgcac atcgacaatg 540 actttaagga gttcgtggtt tgcctttcgg atgggactac gggtattggg ctgacccatc 600 gattaagatt acgtgtctgc ttgaagtcat tgtattttgt tggtaaggta tggatggacg 660 ataacatcaa ttcctggaat aatactaaca ctgttatgtt ctggatcgtg agagataggc 720 gtccatcagg aactccaaat gatttccagg aagtgtttaa tgtttatgac aacgagccct 780 ctacggctac tgtgaagaac gaccagcgtg atcgttttca ggtgttgagg aggttccagg 840 caacagtcac aggtggtcaa tatgctgcta aggaacaagc tataattagg aaattctatc 900 gtgttaacaa ttatgtggtg tataatcacc aggaagctgg gaagtatgag aatcatactg 960 aaaatgcttt attgttgtac atggcatgta ctcatgcctc taatcctgtg tatgctactt 1020 tgaaagttag aagctacttc tacgattctg taaccaatta atattaataa agatcgaatt 1080 ttatttctga agattgctct acatacatag tttgttctat tttattgtac aatacatggt 1140 ctacagccct aataattgaa ttaagtgaga ttacacccag attgttgaga tatttgagga 1200 cttgggtttt gaataccctt aagaaaagac cagtcggagg gtgtaaggtc gtccagaccc 1260 ggaaggtcag aaaacacttg tgcactccca gagctctccg aaggttgtag ttgaattgga 1320 tcctgactgt tattatgtcc atgttgctcg agtaaggacg gtcctcgtgg cttaggatct 1380 tgaaataaag gggatttggt atgtcccaga tataggcgcc actccatgct tgagctgcag 1440 tgatgggttc ccctgtgcgt aaatccatgg atgaagcagt taattgatag ataataagga 1500 caccgacatt caagatctac tctcctcccc ctgttgcgtc tcttcgcttc cctgtgctgt 1560 accttgattg gaacctgagt acagtgttcc ctcaaaggtg acgaagatcg cattctgaac 1620 tgtccagatc tttagtgcgg ggttctttcc atcgtcaagg attcttttat aactgctgtt 1680 gggaccagga ttgctcaggt agattggtag cattcgccca ttgatttgaa ctgacttcca 1740 gtacattgcc ttggattgcc agttcctttg ggccctcatg aactctttaa agtgtttgag 1800 gaagtgcgga tcaacgtcat caatgacgtt ataccaagcg tcattactgt acacctttgg 1860 gcttagatct aaatgcccac ataaatagtt atgtgggcct aaagacctag cccacattgt 1920 tttcccagta cgactgtcgc cctcaattac tatactttga ggtctatggg gccgcgcagc 1980 ggcgtcgaca acattctcgc acgcccactc ttcaagttct tctggaactt gatcgaaaga 2040 agaagaagaa aaaggagaaa cataaggagc tggtggctcc tgaaagatcc tgtctagatt 2100 tgcatttaaa ttatgaaatt gtagtacaaa atctttagga gctaactcct taatgactct 2160 aagagcctct gacttacttc ccgcgttaag tgctgcggcg taagcgtcat tggctgtctg 2220 ttgccctcct cttgcagatc ttccatcgat ctgaaattcc ccccactcga gaatgtcccc 2280 gtccttggcg atgtaggact tgacgtcgga gctggattta gctccctgaa tatttggatg 2340 gaaatgtgct gacctggttg gggatacgag gtcgaagaat ctgttatttt tgcactggta 2400 tttgccttcg aactggatga gcacgtgtag atgaggttcc ccattctcat gaaactctct 2460 gcagattcta atgtattttt tgtttactgg ggtttcaagg ttttgtaatt gggaaagtgc 2520 atcctcttta gtaagagagc actttggata agtgataaaa taatttttgg catttatttt 2580 aaatggtttt gcaggaggca tggtcatgga caaccgatac tcttcaaaaa acttatgtga 2640 atcggtgtct ggggtcttat ttatacttgg acaccaaatg gcaattttgg taaaaatata 2700 aggaaattca actcccacag gctccaaaaa gcggccatcc gtataatatt 2750 //