ID JQ911698; SV 1; linear; genomic RNA; STD; VRL; 6431 BP. XX AC JQ911698; XX DT 27-JUN-2012 (Rel. 113, Created) DT 02-JAN-2014 (Rel. 119, Last updated, Version 2) XX DE Hosta virus X isolate HVX-37 replicase, TGBp1 (TGBp1), TGBp2 (TGBp2), TGBp3 DE (TGBp3), and coat protein (CP) genes, complete cds. XX KW . XX OS Hosta virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6431 RX DOI; 10.1094/PHYTO-02-12-0025-R. RX PUBMED; 22809286. RA De La Torre C.M., Qu F., Redinbaugh M.G., Lewandowski D.J.; RT "Biological and molecular characterization of a U.S. isolate of Hosta virus RT X"; RL Phytopathology 102(12):1176-1181(2012). XX RN [2] RP 1-6431 RA De La Torre C.M., Qu F., Redinbaugh M.G., Lewandowski D.J.; RT ; RL Submitted (09-APR-2012) to the INSDC. RL Plant Pathology, The Ohio State University, 2100 McCoy Rd., Wooster, OH RL 44691, USA XX DR MD5; af376d0df8864bdc0df291e1b2dd5071. XX FH Key Location/Qualifiers FH FT source 1..6431 FT /organism="Hosta virus X" FT /host="hosta 'Sum and Substance'" FT /isolate="HVX-37" FT /mol_type="genomic RNA" FT /country="USA" FT /collection_date="May-2007" FT /db_xref="taxon:214439" FT CDS 105..4526 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:I6SJE7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I6SJE7" FT /protein_id="AFM77886.1" FT /translation="MARLREVFSSFTEPNLKTIVQQETYKLAKAELKTIQTYNPYAQTK FT DAADLLEDLGINTNPHAVAAHTHAAAKSIENDLYGITSHYLPKTPITFLFMKRGKLQFF FT KRGPQHNDLFFYTTHEPKDVIRYQSEDQTADMFRVPTSTAFIGDTLHFLSLKYLHRLFL FT KNPNLNTLYATMVLPPEAMYRMASIYPEIYQIQYQEDGFLYIPGGHGGAAYFHTYDTLT FT WLRVGQFQAKEFTLTFQKLETKGANHLFIIQRADLKTPKYRTFVPRRKWVTLPNIFLPK FT HTNARKPILKQTMMQLFLYEKSVKEITFRDVFAKIRQLIQTKDLEQFDPDELVRLANYV FT MHTSKLLEKNPYELIEGQGKLQDLVNPIKTWVSEKWQDWFGWKDYTRLTKALKWVDVDL FT VLRVMKYTEYSDWKFETSEFMPDEARPITKEQEEEEAVIERTFTQLQEQIKEDKRKSEV FT QREKEATQKKAEVAKGKLPASDGASSSSPKGRSIAFGTFQPVPERTPSEVPAAAPFKIP FT GFPDVLYADAIPNSVFTKPAGQGTEGPSNRSTPPTTQEAGTEGPPTTQPGKPTASSPRA FT APQPTANAETMEKGSQASSATTRGRDPVIDRTREQAPTSITPEEEALPWKHWLKQLKAV FT GFKGNETQMDGDGTTISPIEQIKSMPVSNPSSVSKEILETLRSVARAPTSWKPDASRAR FT AYTSDIKNRRTGAAVHMAPQAWKETMDFIAENAERTLHISVIHGAGGSGKSRCLQEMLN FT KFHFLFDETLVVCPTNELRRDWIDKLPLSEPGSVLTFERALMNPAKGTVIFDDYTKLPA FT GFIEAYSICQPNVELVILTGDAKQASHHESNDNAMIAGLDPAALEFSKFCRYYLNATHR FT NPRNLANALGIYSEKPGNLKVTFTNHLLPEMHILVPSLLKKATLEELGHKCSTYAGCQG FT VTLSKVQIYLDSNTTLCSNEVLYTALSRAVEQINFVNSGPFNGPFWAKLEATPYLKTFL FT RLTREEKINEITPEEPKPKEPEPPKTHFPVETSAHLYSSITEEMPEKHAREIYNKTHGH FT TNCVQTDEPLVQMFAHQQAKDEALFWETIEARLRITTSEANVQELNEKRDIGDLLFHAY FT HKAMGLPKDPIPFENDLWETCAQEVQQTYLSKPINLIKNGEKRQGPDFDKNAIMLFLKS FT QWVKKMEKLGAPTIKPGQTIASFHQITVMLYGTMARYMRRIRDRFCPKHILINCEKTPT FT QISDFVKAQWDFSDFAYANDFTAFDQSQDGAMLQFEIIKAKFHNIPEDIILGYMDIKTN FT AKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRFNVPENVAQVYAGDDSALSKVCPEK FT DSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITPRGIIKDPVKLHASWVLATKLGTL FT QQIKCVNSYGEDLKLSYDLGDHLQELLSESQCRTHQVTVRELVKFAGKVEKHQAEIRSV FT ANGNIRQLPFFY" FT gene 4492..5187 FT /gene="TGBp1" FT CDS 4492..5187 FT /codon_start=1 FT /gene="TGBp1" FT /product="TGBp1" FT /db_xref="GOA:D1GFI6" FT /db_xref="InterPro:IPR027351" FT /db_xref="UniProtKB/TrEMBL:D1GFI6" FT /protein_id="AFM77887.1" FT /translation="MATFASFLSSTRPDFERTNTPLTKPLVIHAVAGAGKTTLLRDFLR FT ANPLTNAQTLGTPDCPTLDGAYIRPFSGPVANLVNVLDEYTAQPVTGSWDVLIADPLQH FT YERAKLPHYICKRSHRLCPATARLLRKLGLDIHSYREDESEISFSDIFSGQLEGTVLPL FT TPLCKDLLERHSCPFKCPSEFIGEQDDTITVVSEIPLSKHPDKTALYRALTRHTRRLNV FT LAPPPYPTP" FT gene 5153..5503 FT /gene="TGBp2" FT CDS 5153..5503 FT /codon_start=1 FT /gene="TGBp2" FT /product="TGBp2" FT /db_xref="GOA:Q6Y595" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q6Y595" FT /protein_id="AFM77888.1" FT /translation="MSSPHRLTPPPNYTPVLLAVVIGVGLAVVTNQLTRSTLPHVGDNI FT HSLPHGGNYKDGTKSVIYRGPAPFQRSHSTAPPFIAVLLLTFAIWFLSCRTRRAAIGIH FT VCHTCSQTREQQ" FT gene 5391..5615 FT /gene="TGBp3" FT CDS 5391..5615 FT /codon_start=1 FT /gene="TGBp3" FT /product="TGBp3" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:Q6Y594" FT /protein_id="AFM77889.1" FT /translation="MQSFCSHLRSGSFPVVLGALLLAFTCATLVLRLGNNNSNNCLIYV FT DGARAFLEGNCAGISAEVVAALRPHSHAG" FT gene 5660..6322 FT /gene="CP" FT CDS 5660..6322 FT /codon_start=1 FT /gene="CP" FT /product="coat protein" FT /db_xref="GOA:Q6Y593" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:Q6Y593" FT /protein_id="AFM77890.1" FT /translation="MASDAPTPPAAPSPVTFTAPTQEQLTSLALPIISTRLPSPDVLNQ FT ISVKWQELGVPTASISSTAIALCMACYHSGSSGSTLIPGLAPGTTVNYTSLAAAVKSLA FT TLREFARYFAPIIWNYAIEHKIPPANWAAMGYKENTKYAAFDTFDSILNPAALQPTGGL FT IRQPTEEELLAHQANSALHIFDSLRNDFASTDGRVTRGHITSNVNSLNYLPAPEGSS" XX SQ Sequence 6431 BP; 1882 A; 1919 C; 1456 G; 1174 T; 0 other; gaaaacaaaa ccaattttaa ccaacttcaa acaaagaagt ttaatttcgc ttacaaaccc 60 attcgcaaac agatcgatcg gagggactcc ctagatctta agcaatggcc agattgagag 120 aagtttttag ctcattcaca gagcctaacc tcaagaccat agtgcagcaa gagacataca 180 agctggcaaa agcggagcta aagaccatcc aaacatacaa cccatacgca caaaccaagg 240 acgcagccga cctccttgag gacttgggaa taaacacaaa cccacacgcg gttgcggcac 300 acactcacgc tgccgccaag tctatagaaa atgacctgta tggcattacg agtcactacc 360 tcccaaagac tccaattaca tttcttttca tgaaaagagg aaaactccag ttcttcaaaa 420 gaggtcccca acacaatgac ctgttcttct acaccacgca tgagccaaaa gacgtgattc 480 gctaccaaag cgaagatcag actgcggaca tgttccgtgt gccaacgagc acggcattca 540 ttggggacac actacatttc ctctccttga aatacctaca tcggctattc cttaaaaatc 600 caaatctcaa caccctctac gccaccatgg tactaccccc agaagccatg taccggatgg 660 cctctatcta tcccgagatc tatcaaattc aataccaaga agacgggttc ctgtacatac 720 caggaggaca tggaggagcc gcatacttcc acacttacga caccctaacc tggctccggg 780 taggccaatt ccaggcgaag gagttcacgc tcaccttcca aaagttggag acaaaaggcg 840 caaatcatct cttcatcatc caaagggctg acctaaagac accgaagtac cgcaccttcg 900 tgcccagaag aaaatgggtc acacttccaa atatctttct gccaaagcac accaatgcca 960 gaaaacccat actcaagcaa accatgatgc aactcttcct gtacgagaaa agtgtgaaag 1020 agatcacatt tcgagacgtt tttgcaaaaa ttagacagct catacaaacc aaagatctgg 1080 aacaatttga cccagacgag ctggtaaggc tggcaaatta cgtcatgcat acatcaaaac 1140 ttctcgagaa aaacccctac gaactcatag aggggcaagg aaagttgcaa gatctagtca 1200 acccaattaa gacatgggtt tcagagaagt ggcaagactg gttcggctgg aaggactaca 1260 ccagactcac aaaggcactg aaatgggtgg atgtcgacct ggtactgcgg gtgatgaaat 1320 acacggagta ctccgattgg aaattcgaaa cctccgaatt tatgccagat gaggcccggc 1380 ccatcaccaa agagcaagaa gaagaggagg cggtaataga gagaaccttc acgcaactgc 1440 aggagcaaat caaagaggac aagaggaaat cggaggtaca aagagagaag gaggccacac 1500 agaagaaagc tgaggtggca aaaggaaaac ttccagcgag tgacggtgca agctcatcaa 1560 gccccaaagg gagatccatc gcctttggca cgtttcagcc agtccctgaa agaactccct 1620 cggaggtccc agccgcggcg cctttcaaaa ttccaggatt tcctgatgtc ctctacgcag 1680 acgcgattcc aaattccgtc ttcactaaac cggcgggaca gggcactgag ggcccaagca 1740 acaggagcac gccaccgaca acgcaggaag cgggaacgga agggccgccc acaacgcaac 1800 ccggcaaacc gacagccagc agtccaagag ctgctccaca accaacggcc aacgcggaaa 1860 caatggagaa ggggtcacag gcatcaagcg caaccaccag aggaagagat cccgtgatag 1920 accgaacgag ggagcaggcc cccaccagca tcacgcctga ggaggaagca ctgccatgga 1980 agcactggct caagcaactc aaagcggtcg gattcaaggg caatgagact caaatggacg 2040 gggacggaac tacaatctcc ccgattgagc agatcaagtc catgcccgtg tcaaacccaa 2100 gtagtgtctc aaaagaaatt ctcgagacgc tacgatctgt ggcacgcgca ccaacttcct 2160 ggaaaccgga cgcaagcaga gcgagagcct acacctcgga cataaagaac cgcaggaccg 2220 gagcggcagt ccacatggcc ccacaggcgt ggaaagaaac gatggacttc atagcagaga 2280 acgcagaaag gaccctccac atctccgtca tccatggcgc aggcggttca gggaagagca 2340 gatgtcttca agagatgctc aacaagttcc actttctctt cgacgaaaca cttgtggtgt 2400 gccccactaa cgagctcaga agagactgga tagacaagct gcccctttcc gaacccggct 2460 cagttctgac atttgagagg gctcttatga atcccgccaa gggcacggta atcttcgacg 2520 actacaccaa gcttccagcg ggctttatcg aggcttactc catctgccag cccaacgtgg 2580 agctcgtcat cctcaccggc gatgcgaaac aagcgtcaca ccacgagtcc aatgataatg 2640 ccatgatcgc cggccttgac ccagcagccc tcgagttctc caagttttgc cggtactacc 2700 tgaatgccac acatcgcaac ccgagaaacc ttgccaacgc actcggaatc tactcagaga 2760 aacccggcaa cttgaaagtt actttcacca atcacctcct cccagaaatg cacatcttgg 2820 tcccctcact actgaagaag gccacactgg aggagctggg ccacaaatgc agcacatacg 2880 ccggatgcca gggagtaaca ctcagcaaag tccaaatcta cctggacagc aacacgaccc 2940 tgtgctcaaa tgaggttctg tacacagcgc tgtcaagggc cgttgaacaa atcaatttcg 3000 tgaactcagg gccattcaac gggccgttct gggccaagct cgaggcaacc ccttacctca 3060 agacgttcct gcgcttaacc agagaggaga aaattaacga gatcactcca gaggagccca 3120 aaccaaaaga acctgagccg ccgaagacac acttcccagt cgaaacttcc gcacacctgt 3180 actcaagcat caccgaggaa atgccggaaa agcacgccag ggaaatttac aacaagaccc 3240 acgggcacac gaactgcgtg cagacagatg agcctctcgt gcaaatgttc gcgcaccaac 3300 aggcgaagga cgaggcactc ttctgggaga caattgaggc caggcttaga atcacaacct 3360 ctgaagcaaa cgttcaagag ctcaatgaaa agagggacat cggggatcta ctattccatg 3420 cgtaccacaa ggcaatgggg ctcccaaagg accccatccc ttttgagaat gatctctggg 3480 aaacctgcgc gcaggaagtg caacaaacct acctctcgaa gccaattaat ttaatcaaga 3540 acggggagaa gaggcaaggc ccggacttcg acaagaacgc aatcatgctc ttcctgaaat 3600 ctcagtgggt caagaagatg gaaaaacttg gggccccaac aatcaaaccg gggcagacca 3660 tcgcgtcctt ccaccagatc acggtcatgc tgtacggcac aatggccagg tacatgagaa 3720 gaatcagaga caggttctgc ccaaaacata tcctcatcaa ttgcgaaaag accccaacac 3780 aaatctctga ctttgtcaaa gctcagtggg acttctctga ctttgcatac gccaacgact 3840 tcacggcctt tgatcaaagt caggatggag ccatgctcca gtttgagatc atcaaagcaa 3900 agttccacaa cattccagag gatataattt taggctacat ggacatcaag acaaatgcaa 3960 aaatcttctt aggaaccctg gccatcatga ggctcacagg cgagggaccc accttcgacg 4020 ccaacaccga atgcaacatc gcgtacacac acttgcgatt caacgtgccg gaaaatgtcg 4080 cacaagtgta cgctggagat gattccgccc tctcaaaggt ctgccctgaa aaagactcct 4140 tcaagcaatt cgcggaccga ctcaccctaa aatccaaacc ccaggtgttc ccgcaaacac 4200 agggcgcctg ggctgagttt tgcgggcttc taatcacacc aagaggaatc ataaaggacc 4260 ccgtgaagct gcacgcctcc tgggtgctgg caaccaaact tggcacactg caacaaatca 4320 aatgcgttaa ctcgtacggt gaagacctca agctttccta cgaccttggt gaccatctac 4380 aggagctcct ctcggagtcc cagtgcagaa cccaccaagt caccgttagg gagctggtta 4440 agttcgctgg aaaagtcgaa aagcatcaag cagagatcag atcagtggcc aatggcaaca 4500 ttcgccagct tcctttcttc tactaggcct gacttcgaac gtactaacac tcctctaacc 4560 aaaccactag tcattcacgc ggtggcaggc gcgggcaaaa ccacactcct ccgcgacttc 4620 ctcagggcca acccactaac taatgctcag actctgggaa caccagactg ccccactctg 4680 gacggagctt acataaggcc tttctcagga ccagttgcaa atctcgtcaa cgttcttgac 4740 gaatacacgg cgcagcccgt caccggctcc tgggatgtcc tcattgcaga ccccctccaa 4800 cactacgaga gggcaaagct cccacactac atctgcaagc gatcacaccg cctctgcccg 4860 gcaactgcta gactgctgag aaagctcggc ctcgacattc actcttaccg ggaggacgag 4920 tcggagatct ccttctccga catattcagc ggtcaactcg aaggcactgt tctcccgctt 4980 accccactct gcaaagacct tcttgagagg cactcctgcc ccttcaaatg cccatctgag 5040 ttcataggcg agcaggacga cactatcacc gtggtaagcg agattcctct gagcaagcac 5100 ccagacaaga cggccctgta cagggcgctg acgaggcaca cgcggagact caatgtcctc 5160 gccccaccgc cttaccccac cccctaacta cacaccagta ttgctagcgg tagtgatagg 5220 agtaggacta gcggtagtta ctaaccagct aactaggtca acgcttcccc acgttggaga 5280 caacattcac tccctgcccc acgggggaaa ttacaaagac ggaacgaaat ccgttatcta 5340 caggggacca gccccattcc agagaagtca ctcaactgcc ccccctttca ttgcagtcct 5400 tctgctcaca tttgcgatct ggttcctttc ctgtcgtact aggcgcgctg ctattggcat 5460 tcacgtgtgc cacacttgtt ctcagactcg ggaacaacaa tagcaacaac tgcctaatct 5520 acgtggacgg agcgagagcc tttctggaag gaaactgcgc tggaatatca gcggaggtgg 5580 ttgcggcact aaggccccac tcacacgccg gttaagtttg ccaaagtctc gaactaacta 5640 acaggcggcc actcaacaga tggcaagtga cgcaccaacc ccaccagctg ccccatctcc 5700 cgtgaccttc actgcaccaa cacaggaaca actgacgtcc ctggccctgc ccatcattag 5760 cacaaggctc ccaagccccg atgtgctcaa ccagatctca gtgaagtggc aggaactggg 5820 ggttcctacg gctagcattt cgtccacagc catagcgctg tgcatggcct gctaccactc 5880 agggtcctca gggagcaccc tcatcccagg actcgcgcca ggcacaacgg tcaactacac 5940 ctccctcgcg gcagcagtga agtccctagc cacactcagg gagttcgcaa ggtacttcgc 6000 ccccatcatc tggaattatg cgatcgagca caagattcca ccagccaact gggcggcgat 6060 gggctacaaa gaaaacacga agtacgcggc tttcgacacc ttcgactcca tcctcaatcc 6120 cgcggcgctg caacccacgg gaggcctaat cagacaacca acagaggagg agctcctggc 6180 ccaccaagca aactcagccc tccacatctt cgattccctg agaaacgact tcgcctccac 6240 tgacggcagg gtgacaagag gacacatcac ctccaacgtg aactcactca actaccttcc 6300 tgccccggaa ggctcaagtt gaatccgccc caataaacaa ggctccaccg aagcctccca 6360 ctgggttcca tcgggctaac cgttccacta acttaaagtg tgctaaggtt tggtttaaca 6420 gaaaatttcc a 6431 //