ID JQ901105; SV 2; circular; genomic DNA; STD; VRL; 3206 BP. XX AC JQ901105; XX DT 10-MAY-2012 (Rel. 112, Created) DT 01-MAY-2014 (Rel. 120, Last updated, Version 4) XX DE Grapevine red-blotch associated virus isolate JRT[456]17NOV10, complete DE genome. XX KW . XX OS Grapevine red blotch virus OC Viruses; Geminiviridae; Grablovirus. XX RN [1] RP 1-3206 RX DOI; 10.1128/JVI.00943-12. RX PUBMED; 22733880. RA Krenz B., Thompson J.R., Fuchs M., Perry K.L.; RT "Complete genome sequence of a new circular DNA virus from grapevine"; RL J. Virol. 86(14):7715-7715(2012). XX RN [2] RP 1-3206 RA Krenz B., Thompson J.R., Fuchs M., Perry K.L.; RT ; RL Submitted (04-APR-2012) to the INSDC. RL Department of Plant Pathology and Plant-Microbe Biology, Cornell RL University, 334 Plant Science Bldg, Ithaca, NY 14853-5904, USA XX RN [3] RC Sequence update by submitter RP 1-3206 RA Krenz B., Thompson J.R., Fuchs M., Perry K.L.; RT ; RL Submitted (12-MAR-2014) to the INSDC. RL Department of Plant Pathology and Plant-Microbe Biology, Cornell RL University, 334 Plant Science Bldg, Ithaca, NY 14853-5904, USA XX DR MD5; dbb39681c6c45b0b3b49ad746be83b0e. DR EuropePMC; PMC3416304; 22733880. DR EuropePMC; PMC3569392. DR EuropePMC; PMC3570808. DR EuropePMC; PMC5014472; 27774276. XX CC On Mar 12, 2014 this sequence version replaced gi:385719291. XX FH Key Location/Qualifiers FH FT source 1..3206 FT /organism="Grapevine red blotch virus" FT /host="Vitis vinifera (grapevine)" FT /isolate="JRT[456]17NOV10" FT /mol_type="genomic DNA" FT /country="USA:NY" FT /collection_date="17-Nov-2010" FT /db_xref="taxon:1381007" FT CDS 292..807 FT /codon_start=1 FT /product="V2 protein" FT /db_xref="UniProtKB/TrEMBL:A0A1W5YNS1" FT /protein_id="AHL69793.1" FT /translation="MVTLNKRNRVLPECDSCSSSESSLNDIDICGDDDGLGDEALDAGS FT VYSSSQKLLVSVAKDVLLDDCDATILDISLPSALWFLSQRYLTCCLRKELLPLPGISEK FT QTVLLRQLIRRVARRHCLFTYKCEEWFEGCLKIKEDGNEKKEPPTEAEKKAQDDWEEFC FT RKAACSAS" FT CDS 710..1384 FT /codon_start=1 FT /product="putative coat protein" FT /note="CP" FT /db_xref="GOA:A0A2K7ZPK3" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A0A2K7ZPK3" FT /protein_id="AFI71938.1" FT /translation="MVMKKRSRQRKQRRRRRTTGRSSAVRRRARPRSRPCQFAFHGNSF FT GGTPSLFFLTPIALGTGAEDRTGPVLTVSSMYLKGVVLPSDNVTDGLHDIYFWIILDRF FT PTGTDPSVSDIFTGSDNSGSMIETLTRNRLNRKRFRILGSKKLVVGVNKKPQESLPHSR FT AAFNIFQRRRLVVAFKNDVSGGGRNDVERNRIYLSAASASGHTFRLYLNGIVNFYNGVI FT FQ" FT CDS 1365..1736 FT /codon_start=1 FT /product="V3 protein" FT /db_xref="UniProtKB/TrEMBL:W8QHK7" FT /protein_id="AHL69794.1" FT /translation="MELFFNRPRCLLWRVYDQVSEFGLYDGGEDVDIPIVGDDEDEEMV FT TTGYGEFVKTLKRRRSERGEVTKTYKRRIALTEPDRSRTEVEELRDYLLEEDYDKHRRR FT LDLELGSGLHSPDSRCTVM" FT CDS complement(1898..2332) FT /codon_start=1 FT /product="C2 protein" FT /db_xref="GOA:W8QV06" FT /db_xref="InterPro:IPR001301" FT /db_xref="UniProtKB/TrEMBL:W8QV06" FT /protein_id="AHL69796.1" FT /translation="MLKEYITLTMNSTMQEATHRRRKSLVIEGPSKTGKTQWAMSLGIH FT NYWCESVDFSLYIDDALYNIIDDIPFQYLPCKKALLGCQFNYIANEKYRPKRKIKGGIP FT SIVLCNPDNSYYDAITNWHATFKPWAEENIIFVKIDRPLY" FT CDS complement(2250..3044) FT /codon_start=1 FT /product="C1 protein" FT /db_xref="GOA:W8RD96" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:W8RD96" FT /protein_id="AHL69795.1" FT /translation="MASSSSFNLRSKNFFLTYPQCPVHKQFALDFFKSKFHKTLDYALI FT GEEKHQNGEPHLHALLIFKKRQAIRNPKHFDITISSHSYHPNITKPRDVADVLNYVGKE FT GDTVEHGTKPTLKSKKQSRELDFGEFLRVANSKDEFLQLVKQHYPYQYVLNLQRLEYFV FT AQTWPPTPTPHANQWTAWNNLPPEIHLWVQNELYVVRKSSAQRNLGPGINNFLEQETKR FT VQHIIDDKLDAYYLDYVERIYNTDDELNNAGSDAPKEEEPGD" XX SQ Sequence 3206 BP; 793 A; 511 C; 819 G; 1083 T; 0 other; actggcactt cccatggtac gtggtattct tgcggagcaa gtttctctac tttggcaaat 60 gcttctgatt ggttggtgtg gaatttattc ttttcttttg tcggccactt gcgtggcttt 120 tacgcgaagc taaagtggcc gcatatatgt tttttagtta gggtatatta ttaatggagg 180 atcgatgcgg gtggaaacgc actttggctg ttgtgctaat ttctctctca atattttggg 240 tgttgtactg gttagtattc ttctctcgtc gcatttgtaa gaggaatcgg aatggtaaca 300 ctgaacaaac ggaatcgcgt tcttcctgag tgcgattcct gcagttctag tgaaagttct 360 ttgaatgata ttgatatttg tggtgatgat gatgggttag gggatgaggc tttagacgct 420 ggatccgttt attcgtcgtc acagaaactg ttagtttctg tggctaaaga tgttctttta 480 gatgactgtg atgcaacgat attggatata tcgttgcctt ctgctttatg gtttttgtcg 540 caaagatatt tgacttgttg tttgaggaaa gaattactgc ctctgccagg tatatccgag 600 aaacagactg ttttattgcg acagctgatt aggcgtgtcg ctcgtcgtca ttgtttattt 660 acttacaagt gcgaggagtg gtttgagggt tgtttgaaga taaaggagga tggtaatgaa 720 aaaaaggagc cgccaacgga agcagagaag aaggcgcagg acgactggga ggagttctgc 780 cgtaaggcgg cgtgctcggc ctcgtagtag gccttgtcag tttgcattcc atgggaattc 840 ttttgggggt accccttccc tttttttttt gactccgatt gctttaggta ctggtgcgga 900 agacagaaca ggtccagtat tgactgtcag cagtatgtat ttgaaaggtg ttgtgcttcc 960 gtcggacaat gtcaccgatg gattgcatga tatttatttt tggataattt tggatcggtt 1020 tcctactgga actgatcctt cggtatctga tatattcact ggtagtgata acagcggaag 1080 catgattgag acattgacga ggaatcgttt gaatcgtaag agatttcgta ttttgggttc 1140 gaagaaactt gttgttggcg tgaataagaa gccgcaggag tcattgccac attcacgtgc 1200 agcatttaat atttttcaaa gacgtcgtct ggttgtcgct tttaaaaacg acgtgtctgg 1260 tggaggacgt aatgatgttg aaaggaatcg tatttatttg tctgcggctt ctgcaagtgg 1320 acatacgttt agattgtatc taaatggaat tgtaaacttt tataatggag ttatttttca 1380 atagaccacg ctgtttatta tggcgtgtgt atgatcaagt ttctgagttt ggtttgtatg 1440 atggtggtga agatgttgat atccccattg ttggggatga tgaagatgaa gaaatggtta 1500 caactggata tggtgaattc gttaagacgt tgaagagacg tcgatctgag cgcggagagg 1560 tgacaaagac ttacaagcga agaattgcat tgactgaacc tgatcgtagt agaactgaag 1620 ttgaagaatt gagagattat ttgttagagg aagattatga taagcataga agacgtctgg 1680 acctggagct aggctcaggc ttgcatagtc cagacagtcg ttgtacagta atgtgaatgt 1740 tgtatttgga tatttgaata atagaatatg gtgcaggagt ttattaaaat tataatgtaa 1800 acacttcgaa ataaatcaca cttcaatacc agacaatcag gcacgatttc tttatgaaag 1860 aacccagccg cgaagcggct ggctgacctt ttatttatca gtacaacggt ctatcaattt 1920 ttacaaagat aatgttttct tcagcccacg gcttgaatgt tgcatgccaa ttggtgattg 1980 catcatagta agagttatct ggattacaaa gaacaattga tgggatccct cctttgattt 2040 tccgctttgg acgatatttt tcatttgcaa tgtaattgaa ttgacaacct aataaggctt 2100 ttttacaagg caaatattgg aatggtatat cgtcaataat attgtacaaa gcgtcgtcta 2160 tgtatagact gaagtctact gattcacacc agtagttatg tattcccaat gacatagccc 2220 attgcgtttt acccgtcttc gatggtcctt caatcaccag gctcttcctc cttcggtgcg 2280 tcgcttcctg cattgttgag ttcatcgtca gtgttatata ttctttcaac ataatccaag 2340 taatacgcgt ccagcttgtc gtctattata tgttggacgc gttttgtttc ttgttcaagg 2400 aaattgttta ttcctggtcc aaggtttcgt tgtgctgagc ttttgcgtac cacgtagagt 2460 tcgttttgga cccagagatg aatttctggt ggaaggttat tccaagctgt ccactgattg 2520 gcatgtgggg taggggtggg aggccatgtt tgagcaacaa agtattcaag tcgttgtaga 2580 ttgaggacgt attggtaggg gtaatgttgt ttgacgagtt gcagaaactc gtctttggaa 2640 tttgcaactc gtaggaattc tccaaaatcc agttctctgg attgcttctt tgatttgaga 2700 gttggctttg taccgtgctc gacggtatct ccttcttttc cgacgtaatt aagcacgtcg 2760 gcgacatctc tgggctttgt gatattgggg tgataggaat gagacgatat ggtgatgtca 2820 aagtgttttg gattgcgaat agcctgtcgt tttttgaaga tgagcaaggc gtgtaggtgt 2880 ggctcgccat tctgatgttt ttcttctccg atgagagcgt aatctagggt tttgtggaac 2940 ttggatttga agaagtctag ggcaaactgt ttatggactg ggcactgagg gtatgtgagg 3000 aagaagtttt ttgagcggag attgaaggag ctacttgatg ccatcttggt tgtataagat 3060 gggttggtac tctttatata gtggttgatt agatgacatc aggtgatgtc agctattttg 3120 ttttattatc ccccaattct agcttatagt tttggtggta ttttggtact cagggcaaaa 3180 tttgtattga agtgccatat aatatt 3206 //