ID JQ899449; SV 1; linear; genomic RNA; STD; VRL; 7039 BP. XX AC JQ899449; XX DT 01-MAY-2013 (Rel. 116, Created) DT 01-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Garlic virus X isolate SW3.4A, partial genome. XX KW . XX OS Garlic virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-7039 RA Wylie S.J., Li H., Jones M.G.K.; RT "Viruses of imported garlic in Australia"; RL Unpublished. XX RN [2] RP 1-7039 RA Wylie S.J., Li H., Jones M.G.K.; RT ; RL Submitted (04-APR-2012) to the INSDC. RL Plant Virology, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 0c7fb6c2a61bca4350e00683525cbeda. XX FH Key Location/Qualifiers FH FT source 1..7039 FT /organism="Garlic virus X" FT /host="Allium sativum" FT /isolate="SW3.4A" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Sep-2011" FT /db_xref="taxon:150284" FT 5'UTR <1..82 FT CDS 83..4714 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:M9PPX4" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:M9PPX4" FT /protein_id="AGG13306.1" FT /translation="MTTVQKLLDQISDPNARAAYSQDCLSAAKNAATKAMAIAPYAVTQ FT TEALTLERIGITTSPFATTSHTHAADKIIENDCLETIGRYLPKEPVTLIQLKRAKLHLL FT KRGPNTDIFQNYCHEPKDVLRFGLTNPNTCPTVNTSCAVISDTLHFMSSQQVWTLFKNN FT PRLQKLYGTLVLPIEALTKLPSLFPEIYKLEYYDKHFAYMPGGHGGGAYVHSYGTLKWL FT STAQIGTERNHLSIEKIETKAAHHIVLIQRRRQESPWPLPPLWVFHASDYVRLPEIFYP FT SEANVQKAYPHTFIKRLQLYCFSVKAVSLRDIFAKIRQVIPTEELAKFSTADLIRLANY FT LLFITGMQQTSDYQSPLMESLFGKLCLSVRARIRSFFQDLMGKSSYAALLTVTDVRPVY FT FTTKPVRRPISGEPWFEEAETEFKPELPSITGYPTPSPDDLDLLAEFTQHEQESKEGPR FT SSQGNDAPRHHRVLHPDQDQTTPIVTENSLEEPRNETAGPSIDRKRAQPSEQPPLTHGK FT QGASSDEAMVDGHLTDWTDSDDDQSEKASDSESEDDQHQPTAEDLLPDEDDMPELESVP FT DEDSNEDDNADLANSHTDEEEGAPSNNTNQPGETANELESASKTTSRVELVPLDSETVE FT ILKLHGFTNHKPQHDGDFQISPVFYNRQANLLPPYDGITNSVQSSFIQMAQALKRNCYS FT YKLDAKRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALSENAHRKVGLIVIHGAGGAGK FT SRALQELLRNRSIDTNEVNIIVPTINLAADWKKKMPSIDPRRVMTFEKACEREGKSVVI FT MDDYGKLPAGYIDAYLAIKFNVELVILTGDQRQSVFYNDKKDSQIALLTPNTVHFKRYC FT DYYINATHRQPRRLANPIKVHAERETGGAIKHSTLIPPHAMTLVPAFRSQSLLTDLGRQ FT AMTYAGCQGLTLPHLTIVLDKDTPLCSDEVLYTALSRASETITFVNTHSNNKDFLDKLD FT STPYLKTLISGVREDEQAGAEQTPPEPTVRDAPTKTHIPVANDKVQLEEKIETMEDKDT FT RELWSGEEKTNLMQTQDPIIQLFPHQQAKDEALFKITINERIRLATPEANCKALKETLN FT AGDLLFEAYADFMNVPRETQPFDKRLWAHCRQLALRTYLSKPAANLQQGAQRQDPDFPE FT NAIALFNKSQWVKKLEKVGCKFKAGQTISAFKQSTVLLTTTMALYLRKKREGHQPSNVF FT IMCEKTPEQFNSFVLTKWDFTRPNYTSDYTQYDQSQDSAFLNFELRKARHFGLPTEVVD FT FYAFIKTHAKTFLGNMAVMRLSGEGPTFDANTECNIAYDALRFQLDPTVNACYAGDDLV FT RDKACDERPGWKYSEPLFSLKAKPMVTRKPDFCGWRLTKYGIVKSPVQLYQSLQLALRL FT GKVEEVKRSYAIDYLFAYRLGDQLYEIFDEDELAKHQLVTRTLIKKGMRPPSSGEHLPT FT FHVTSDRLIRDPKAIKVLSFESDRILVPTDVINDHFAMSTRSDHHDMTAECNRQATELN FT ESTNSNDHSSTLLTDIFPNIAEL" FT CDS 4832..5536 FT /codon_start=1 FT /product="TGB1" FT /db_xref="GOA:M9PQ27" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:M9PQ27" FT /protein_id="AGG13307.1" FT /translation="MKTHLLIQLLTNCGFQRTAEPLQEPLVIHGVPGCGKSTLIKTLIT FT HQSVVAYTLGIPYGKTLAHPGVRSPADCVEDQDVETRILDEYQLGSGQDLQPFNVLFGD FT PFQGSTQLNAHFIKSLSHRVPQPVCDFLKSLKYDIEGEREGIFRVLPVFKANSTGPRGV FT VLHLGPISCQLTRAYNVASKTPSEVQGLEFKEVTLVYHSSELIANPEGFFVAATRASEG FT FNIITDQDPTAL" FT CDS 5580..5900 FT /codon_start=1 FT /product="TGB2" FT /db_xref="GOA:M9PPM7" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:M9PPM7" FT /protein_id="AGG13308.1" FT /translation="MSFTPPADHSKSFLALAAGAAVGLLVFTLRSNQLAPVGDNTHQLP FT HGGQYRDGNKFVNYNGPNSGAAPHGIFWPAVWAIVLALTIHYRSSTSRRICVRCSESTT FT PH" FT CDS 6002..>7039 FT /codon_start=1 FT /product="40 kDa protein" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:M9PQ38" FT /protein_id="AGG13309.1" FT /translation="MTYATAYQLYETKNYIVDYINTVINQIASRLTNGHGRTTQPTQIP FT DYKVREIASSLDTITLSISAGRRNDIPPTSNREFQREFSASSSDSVSRTFFTNLNAALD FT ATGKLLNHVPPTRHVIPPTSLPLDELYGLLHALHRGTLEWLTHISHDTEHIANGIHALQ FT TDLLNEARLNNQKTCAELGKLADLVAELGKRPELNSESDLVKTMHSIETQIHDLVSGLR FT ETTSGKAPDSGNSSGASTDTNTAAAHLTLPAYAPEHPTARCRSYGSVEFGGATFHVPMD FT IKGRRASTALRLLIKHTIERGSTLVKYELFDDGALLLTEEINTPHKLSQPLTDSLSLLH FT SKCTNF" XX SQ Sequence 7039 BP; 2058 A; 1869 C; 1578 G; 1534 T; 0 other; acaaactaaa ctacacagaa ctaacctcaa catcacttga taaggaaact tagcgaagcc 60 ctgaacactt tgttgctgag gtatgactac tgtgcagaag ttacttgacc aaatctccga 120 tcccaacgca agagcggctt attcacagga ttgtctttcc gctgccaaaa atgcagccac 180 gaaagcaatg gccatagccc cttacgctgt cacacagaca gaagcgctca ctcttgagcg 240 cattgggatt accacatcac ccttcgccac cacatcacac actcatgcgg cagacaagat 300 tattgaaaat gactgcctag aaaccattgg ccgttacttg ccaaaagagc ccgtcactct 360 catacaactc aaacgggcca aactgcattt gttaaagaga gggcccaata ccgacatatt 420 ccaaaattat tgccatgagc ccaaagatgt gctaagattt gggctaacaa atccaaatac 480 gtgccccacg gttaacacta gttgtgcagt catatctgat acactacatt tcatgtcctc 540 acaacaagtt tggacattat ttaagaataa tccacgacta cagaaattat atggcacact 600 tgtgttacct attgaagctt taaccaagtt gcccagcttg ttcccagaaa tctacaagtt 660 ggagtattac gataaacatt tcgcatacat gcctggtgga catggaggcg gagcatacgt 720 ccattcgtac ggcacactca agtggctgag cactgcgcaa attggcactg agcgcaacca 780 cctcagcata gagaagatcg aaacgaaagc agcgcatcac atagtactga tacagaggag 840 gagacaggag tctccctggc cgttaccacc actgtgggta tttcatgctt ctgactacgt 900 gagactgcct gaaatatttt accccagtga agcgaacgtc cagaaagcct acccccacac 960 ctttatcaag cgactgcaat tatactgctt ttctgtgaaa gcagtgtcgc tcagggatat 1020 ctttgcaaaa atccgccaag tgatccccac tgaggagttg gccaaatttt ccacggcaga 1080 cctcataagg ttggctaact acctactgtt cataacgggt atgcaacaga cgagtgacta 1140 ccaatcgcca ttgatggaaa gtctttttgg caagctttgc ctatccgtgc gtgctcgaat 1200 ccgcagtttc tttcaagacc taatgggcaa atcgtcgtac gccgcgctcc tcacggtcac 1260 ggatgtgagg ccggtgtatt ttaccaccaa acccgtccgt aggccaattt ccggtgagcc 1320 gtggtttgaa gaggctgaga cagagtttaa gccggagctg ccgtctatca ctggatatcc 1380 caccccgtca ccagacgatt tagacctgct agcagagttc acccaacatg agcaggaatc 1440 gaaagaaggg ccacggtcgt cacaaggaaa tgacgcgcca cgtcaccacc gggtgctgca 1500 tcccgaccag gatcaaacga cacccatcgt gactgagaat tcccttgaag aaccccggaa 1560 tgaaactgcg gggccatcca ttgaccgcaa acgtgcccag ccctctgagc agcccccact 1620 aacccatggc aaacaagggg cgagcagtga tgaagccatg gtggacgggc atctaacaga 1680 ctggaccgac agtgacgatg accaaagtga aaaggcaagt gactcagagt cagaggatga 1740 tcaacaccaa ccgacagctg aagatctttt acctgacgaa gatgatatgc cggaattgga 1800 gagcgtgcca gatgaggaca gcaacgagga cgataatgct gatctggcaa acagtcacac 1860 cgatgaagag gagggggcac ccagcaacaa caccaatcag cctggggaaa ctgctaatga 1920 actcgaatcg gcctcaaaga ccacgtcacg cgtggagttg gtaccacttg acagcgagac 1980 ggtggaaata ctcaagctgc atggcttcac caatcacaaa ccacaacatg atggtgactt 2040 tcaaatttcc cccgtcttct acaaccgtca agcaaacctg ttacctccat atgacggtat 2100 caccaactct gtccaatcaa gtttcataca gatggcccaa gcactaaaga ggaattgcta 2160 tagctacaag ctagatgcta aacgggcaac ggcgttcatg tcggacgtta aaaacaatct 2220 tactgggttg gtattaccaa aacttgacag agacttgctg acatcgtggg tagctttgtc 2280 cgaaaacgcc cacagaaagg tgggtctcat cgtaattcat ggtgcgggtg gcgctggaaa 2340 gagtagggca ctgcaggaat tattgaggaa cagatcgatc gataccaacg aggtcaatat 2400 tatcgtgccg actatcaacc tcgccgctga ctggaagaag aagatgccca gcatagaccc 2460 tcgacgcgtg atgacgttcg aaaaagcctg tgagcgtgag ggcaaatcag tcgttatcat 2520 ggatgactat ggcaaactcc cggcaggtta tattgatgct tacctagcca ttaaattcaa 2580 cgtggaattg gttattctca caggtgacca gagacaatcc gtgttctaca atgacaagaa 2640 ggactcgcaa atcgcattgc tcactcccaa cactgttcac ttcaagcgct attgcgatta 2700 ctacattaac gctacgcacc gacaacctcg aagattagcc aaccctatca aagtacacgc 2760 tgaaagggaa acagggggag ccatcaaaca ctccacgctc ataccccccc acgctatgac 2820 actcgtcccg gctttccgca gccagtcact tctaaccgac ctgggcaggc aagccatgac 2880 ctacgccgga tgccagggct tgacactacc ccatctgacg attgttttgg acaaagacac 2940 cccactatgc tcggacgaag tgttgtacac tgcgctgtcg agagcgtctg aaacgatcac 3000 cttcgtcaac acgcactcga acaacaaaga tttcctggac aagctggatt ccactccgta 3060 cctcaaaacc ctgatttcag gagtgcgaga agacgaacag gcgggcgcgg aacaaacacc 3120 acctgagcca acagttcgcg acgcgcccac aaagactcac atcccggtag ccaacgacaa 3180 ggtgcaattg gaggagaaga ttgaaactat ggaagacaag gacactcgag agttgtggag 3240 cggtgaagaa aaaactaacc ttatgcaaac tcaagaccct atcattcagc tcttccccca 3300 tcagcaggct aaggacgaag ctctctttaa aatcacaata aatgagagaa ttagattggc 3360 gacgcccgaa gcaaattgta aagccctcaa ggagacgctc aacgcaggtg acttgctatt 3420 cgaggcatac gcagacttca tgaacgtgcc tcgtgagact caacctttcg acaagaggct 3480 ctgggcgcat tgtcggcagc tcgctttgcg cacatacctc tcgaaaccgg cggcaaatct 3540 gcaacaaggg gctcagcgtc aagatccaga cttccctgaa aatgctatcg cactctttaa 3600 taagtcccag tgggtcaaga aactcgaaaa ggtgggatgc aaatttaagg caggccagac 3660 tatatcagcc ttcaagcagt caacagtgtt gctcaccacc accatggccc tgtacttgcg 3720 gaagaaaaga gaaggccatc agccgagtaa tgtgttcata atgtgtgaga aaacgccgga 3780 acaattcaac tcgtttgtgc tcacaaaatg ggatttcacg aggcccaatt acacatccga 3840 ttacacccag tacgaccagt cacaagactc tgcgttcctt aacttcgaac tgaggaaagc 3900 taggcatttc ggactaccaa ctgaggtggt ggacttctac gccttcatca agacccatgc 3960 taaaactttc ctgggcaata tggcagttat gcggctaagt ggggaaggac ctacgttcga 4020 cgctaacaca gaatgtaaca tagcttatga cgctctcagg tttcagcttg accccacggt 4080 gaatgcctgc tacgccggtg acgatctggt gcgagacaaa gcttgcgatg aacgcccggg 4140 gtggaagtac tcagagccgc ttttctcgtt aaaagcgaaa cccatggtca ctaggaagcc 4200 ggatttttgc gggtggaggc tgactaagta tggcatcgtc aaatcccccg tgcaattgta 4260 tcaatcacta cagctggccc tacgactcgg taaagtggaa gaagtcaaaa gaagctatgc 4320 catagactac ctatttgcct accgacttgg ggaccaattg tacgaaatat tcgacgaaga 4380 tgagttggct aaacaccagc tggttacgag aacgttgatc aagaaaggta tgcgaccacc 4440 cagctcaggt gaacacctac ctacgttcca cgtgacatca gaccggctta tccgagaccc 4500 aaaagctatc aaagtattga gttttgagtc ggatagaatt ttagtcccaa ccgacgtaat 4560 taacgaccac ttcgcgatga gcaccagatc ggaccaccat gacatgacag ctgagtgtaa 4620 tagacaagcg actgaactaa acgaatcgac gaactcgaac gatcacagca gtactctgct 4680 cacggacata tttccaaaca ttgctgaact ttgactccaa tattaaccac taacaaatac 4740 taacagtaga tcaaattact aaccacatat ggtatagatt gtgaaagtac aacagcgtga 4800 ttcttagtta ggttttccct tggcgtctga aatgaaaact cacttgttaa tacagctgct 4860 gacaaactgc ggtttccaac gtactgctga accactgcaa gaacctctag ttatacacgg 4920 tgtaccgggc tgcggcaagt caacgttgat taaaactctg atcacacacc aatcggtggt 4980 ggcctatacc cttggaatcc catacgggaa aacccttgca cacccaggcg tccggagccc 5040 ggctgattgt gttgaggatc aggacgttga gacccgaatc ttagacgaat accaattagg 5100 ctcggggcag gacttgcaac cctttaacgt attgtttggt gacccatttc agggatcgac 5160 gcaattgaac gcacacttca tcaagtcctt atcccataga gtgccacagc cggtttgtga 5220 tttcttaaaa tcacttaagt acgacataga aggggagagg gaaggaatat tcagagtttt 5280 gcccgttttc aaagctaata gcacaggacc cagaggggtt gtccttcact taggaccgat 5340 ctcctgccaa ttaacaagag cctacaacgt agcatctaaa acaccatctg aggtgcaagg 5400 gcttgagttt aaggaagtca ccctggttta ccattctagt gaacttattg caaatccaga 5460 aggtttcttc gttgctgcca cacgcgcaag tgagggcttc aacatcatca ccgaccagga 5520 tcctaccgcc ttataagcca acttccctga gtcccagcag caaccttagc acctaattaa 5580 tgagcttcac ccccccggct gatcatagca aatctttcct tgcattagct gctggcgcag 5640 cagtcggctt actggtattc actctcaggt ccaatcaact cgcccccgta ggagataaca 5700 cccaccaact accgcacgga ggtcagtatc gagacggaaa caaattcgtg aattacaacg 5760 gaccaaactc tggcgcggcc ccacacggaa tcttttggcc agctgtctgg gcaatcgtac 5820 tcgctcttac catacattac cgtagcagca ctagccgccg catttgtgta cgctgctctg 5880 agtctactac accccactga gactggttgc attatcacaa ttactgggtc ggccgtgcaa 5940 atctccaact gcccattaga gcatatcccg gaaattgtta aagcgttcgc gtggagcgct 6000 catgacttac gccacggcct accagctgta tgaaacgaaa aattatattg tcgattacat 6060 taacacagtg attaaccaaa tcgccagtcg actcacaaat ggacatggta ggacgacaca 6120 accgacccag ataccggact acaaagttag ggaaatcgcg agttcactgg acaccatcac 6180 cctatcaatc tcggctggcc ggaggaacga cattccaccc acctcaaacc gagagtttca 6240 gcgagaattt agcgcgagca gctccgactc agtcagcaga acgttcttca caaatctaaa 6300 tgcagctctc gatgccactg gaaaactatt aaatcatgta ccaccaacta ggcacgtgat 6360 tccccccacc tctcttccct tagatgagct gtacggatta ttgcatgcat tgcacagagg 6420 caccttagag tggttgacac acatcagtca tgacactgag cacattgcca atggaataca 6480 cgctcttcaa acagatttac ttaatgaagc acgcctaaac aatcagaaaa catgcgctga 6540 gcttggaaag cttgcggacc ttgtagctga attgggcaaa agaccagaat tgaattctga 6600 gagcgactta gtgaagacga tgcactccat cgagacgcag attcatgact tggttagtgg 6660 attacgtgaa acgacttccg gcaaggcgcc cgactcagga aacagttcgg gcgcatcgac 6720 agatactaat acagccgctg cccatctcac gctaccagcc tatgctccag aacacccgac 6780 agcccgttgc cgatcatatg ggagtgtaga gtttggcgga gcaacattcc acgtacccat 6840 ggacattaag ggtaggcgtg caagcacggc cttacgtcta ctgattaagc acaccattga 6900 aagaggctca actttagtca aatatgagct ttttgatgat ggcgcactac tgctcaccga 6960 agaaataaac acgcctcaca aactaagcca accactcact gattctcttt ccctcctgca 7020 ctctaaatgt acgaatttc 7039 //