ID JQ899448; SV 1; linear; genomic RNA; STD; VRL; 8410 BP. XX AC JQ899448; XX DT 01-MAY-2013 (Rel. 116, Created) DT 01-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Garlic virus C isolate SW3.3B, complete genome. XX KW . XX OS Garlic virus C OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-8410 RA Wylie S.J., Li H., Jones M.G.K.; RT "Viruses of imported garlic in Australia"; RL Unpublished. XX RN [2] RP 1-8410 RA Wylie S.J., Li H., Jones M.G.K.; RT ; RL Submitted (04-APR-2012) to the INSDC. RL Plant Virology, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 38a29686305d5a497c58b338c16c1d2c. XX FH Key Location/Qualifiers FH FT source 1..8410 FT /organism="Garlic virus C" FT /host="Allium sativum" FT /isolate="SW3.3B" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Sep-2011" FT /db_xref="taxon:12431" FT 5'UTR 1..85 FT CDS 86..4738 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:M9PQ45" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:M9PQ45" FT /protein_id="AGG13300.1" FT /translation="MTTVQKLLDQISDPNARAAYSQECLSAAKNAATKAMTIAPYAVTQ FT TEALTLERIGITTSPFATTSHTHAADKIIENDCLEIISHYLPKDPITLIQLKRSKLHLL FT KRGPTDDTFQNYCHEPKDVLRFGLTNPHTCPTVTTSCAVISDTLHFMSSQQLWTLFARN FT PALQRLYGTLVLPVEALHKLPSLFPEIYKLEYYDKHFAYMPGGHGGGAYIHSYGTLKWL FT STAQIGSGLNHLSIEKIETKAAHHIMVIQRRRPELPWPLPPVWVYHASDYVKLPEIFYP FT TEANVQRPYPHVFIKRLQLYCFSVKAVSLRDIFAKIRQVLPTEELARFSTADLIRLANY FT LLFITGMQQTSDYQSPLMESLFGKLCLSIRARIREFFQNLMGKSSYAALLTVTDVRPVY FT FTTKPLRRPICGEQWFEAEEADEDPSVPSPTGYQRPSPDDLDLLAEFEQQNLLNGAEGQ FT RERQGEHAHGPNQNQTTSTQPPPHQPSPHDAAQSGSSSEARKTESSDEPEVSCKDEEDL FT SSGTSDGHVTDWSDSESDCSDDKHDQNFDSLSLFDTADLPDLEEVEEEPDAAHTTQTPT FT PDVTDELSAVQHTQTPHVAESLVDSDVFVGETIDDETQQPDTVPAVQTRENSRSTKVAL FT EPFDEETIEILKIHGFTNLKPQHDGEFQIAPVFYNRLAKHIPTYEGITTTTQSQFIAMA FT QALKRNCYRYKLDAKRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALAENAKRSVGLIV FT IHGAGGAGKSRALQELLRHGKMDINEVNIVVPTINLAVDWKRKLPSMDPRRIMTFEKAC FT EREGKSIVIMDDYGKLPAGYIDAYLAIKFNVELVILTGDQRQSVFHNDKRDSQIALLNS FT NTDHYKRYCDYYLNATHRQPRRLANPIKVHAEREVGGAVKHATLIPTNAMTLVPAFRSQ FT SLLTDLGRQAMTYAGCQGLTLPHLSIVLDKDTPLCSDEVLYTALSRASETITFINTHSN FT NKEFLDKLDSTPYLKTLISGVREDEQAGREQPPPEPSVRDSPTKTHIPVANDSVQLEGK FT IEAMEDKDTRELWSGEEKTNLMQTQDPVVQLFPHQQAKDEALFKITINERIRLATPETN FT RKALTDTLNAGDLLFEAYASFMNVPKETQAFDKRLWAHCRQLALRTYLSKPTANLQQGA FT KRQDPDFPENAIALFNKSQWVKKLEKVGCRFKAGQTISAFKQSTVLLTTTMALYLRKKR FT EGHQPDNVFIMCEKTPEQFNSFVLTKWDFTRPNYTSDYTQYDQSQDAAFLNFELRKARH FT FGVPEEVVDFYAFIKTHAKTFLGNLAVMRLSGEGPTFDANTECNIAYDALRFQLDSTVK FT ACYAGDDLVRDKACDERPGWKYSEPLFSLKAKPLVTNKPDFCGWRLTKYGIVKSPVQLY FT QSLQLALRLGKVEEVKRSYAIDYLFAYRLGDQLYDIFDEDELSKHQLVTRTLIKKGMQP FT PSSGEHLPTFHVTSDRLIRDPRAIKVSTFESDRIILPLDILDDHFSKSGRTDRAEMTEE FT SNRRAAEIGATTNVAREDLTLTDLFPDAFR" FT CDS 4835..5548 FT /codon_start=1 FT /product="TGB1" FT /db_xref="GOA:M9PPX2" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:M9PPX2" FT /protein_id="AGG13301.1" FT /translation="MKTVLLLQLLDNSNFIRTTTPIADTIVVHGVPGCGKSTLIKDLVT FT KHSTIAYTLGVPYGRSLIHSGVNHISRIDDNLQNFETRILDEYQLGNEETVKDFTVLFG FT DPFQGTFQLPAHFIKRLSHRVPRQICNYLRSLDYDIVGETEGEINFPPIYAANATGPIG FT TVLHLGPVSRQLTRTFGICSKLPTEVQGLEFEELTLVYHSSELQANRELFFVAVTRAKR FT LLNVLTDSKHRPPTA" FT CDS 5557..5868 FT /codon_start=1 FT /product="TGB2" FT /db_xref="GOA:M9PQ26" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:M9PQ26" FT /protein_id="AGG13302.1" FT /translation="MSFTPPPDYNRVYLTLAIGAAAGILVYTLRSNHLTHVGDNTHHLP FT HGGRYCDGNKRIHYNGPQAGSSHAFSVLPFFAAITLTLVIHFLSCSRRRVCVRCSESH" FT CDS 5976..7082 FT /codon_start=1 FT /product="40 kDa protein" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:M9PPM6" FT /protein_id="AGG13303.1" FT /translation="MTIVTTTYVDQTRERINDCVNAARNAVCQNINIVQASIEQQVENT FT SNGILNHFSAWCESIGNQIGTLPTVVGVVNERIQHLEHTLTLRNWPHDLQPPPPMNRVL FT FSNAALALEATRKLLSHVPPTRYNLPQTTLPLDELYGQLHALHQNSLEWLTHIGSDTDR FT LVVDFGTFSSTAVANHDRMTTHLANIRDELRTLRDLPQLLNRLLKQQELHLQTLTDTQK FT EIAALKTLIHHNLTQSQTQESSTPSSSQSGATTHQPQPSDLHPYQARHPTTRCRTYGTL FT IYNGSSLHMPMDILGKPASTALQLQVDIKPSPGGTNVTYKLADNGALLSSDEIFTPHKL FT NKPLSDALSLLHDNCPNFIYNNKDGRLC" FT CDS 7102..7881 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:M9PQ37" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:M9PQ37" FT /protein_id="AGG13304.1" FT /translation="MSGDSLSDDLVNAAMTETSTQGLNQAPSAQGSRPGLVSGPGSQTP FT SKNPRPFSAQGGPTVTNELLPSESELEAVANDVTSNSVATQSTVREILDLLRARKPNAT FT PKDLFSLAWACYHNGSSRYTNLATDAPCGMSHAELKDLVEEFCTLRQFCGFYAKTCYVT FT GRQQNKPPANWARKGFQDESKFAAFDFFNAVSSDSAPNPPGGMRFKPTQAEILGHSLNA FT KMSIIESRKATNMVSTRADVIAQQQIHEPPKPLMLTF" FT CDS 7897..8283 FT /codon_start=1 FT /product="NTBP" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:M9PQ46" FT /protein_id="AGG13305.1" FT /translation="MHPYNLNLLCCLHFSKPTLPLELRLYIYNLAAPNLLLGRKMLQNK FT PFQGTSKCAARRRAKRYNRCFDCGGYLLNNHVCKQFPTRASTSCFNVIHEGPAKLYAEG FT SFRRDSFAEQLILNDLELMKIHNN" FT 3'UTR 8284..8410 XX SQ Sequence 8410 BP; 2490 A; 2220 C; 1787 G; 1913 T; 0 other; aaacaaacta cactgcacaa aaccaaactt caacactact tgataaggaa acttagcgaa 60 gccctgtaca tttagttatt gaagtatgac cactgtgcaa aaactcctcg accaaatttc 120 tgacccaaat gcgcgagcgg cttattccca ggaatgcctt tcagctgcga agaatgcagc 180 taccaaggca atgaccatag ccccttacgc tgtcacacag acagaagcac tcaccctaga 240 gcgcattgga attactacgt caccatttgc caccacttca cacacacacg cggctgataa 300 aataattgag aatgattgtc ttgagatcat cagccattac ctacctaaag accctattac 360 tctgatacaa ttaaaacgat ctaaattgca tctgctgaag agggggccca cagatgatac 420 tttccagaac tattgccacg aaccaaaaga tgtgttgaga ttcgggctaa ccaacccaca 480 cacgtgcccc acagtgacaa catcttgtgc tgttatctcg gatacactgc atttcatgtc 540 atcacagcag ctctggacat tatttgctag gaatccagca ctacaaagac tttatggtac 600 ccttgtgttg ccagttgaag ctctccacaa actcccaagt ctatttccgg aaatctacaa 660 actagaatac tacgataaac actttgccta tatgcctggg ggccatggtg gaggagccta 720 tattcactca tatggcaccc tcaagtggtt gagcactgcc caaattggtt cgggattaaa 780 tcacctgagt atagaaaaaa ttgaaaccaa ggcagcacac cacatcatgg ttattcaacg 840 aagacggcca gagctaccat ggcctctgcc gcccgtgtgg gtttaccatg cttccgacta 900 cgtcaaattg cccgagatct tctaccccac ggaagctaat gtccaaagac catacccaca 960 tgtctttatt aaacgcctac aactttattg cttttctgtc aaagcagttt cacttcgaga 1020 catatttgca aaaattcgtc aagtactacc aactgaagag ttagccaggt tctccacagc 1080 tgaccttata cgattggcaa attatttact tttcataact gggatgcagc aaaccagtga 1140 ctaccagtcc ccattgatgg aaagtttatt cgggaaattg tgcctatcta tacgagcgag 1200 aattcgcgaa tttttccaaa acttgatggg caaatcatcc tacgcagcat tgctaactgt 1260 gacggatgtg cgcccggtgt atttcacgac caagccactc cgtcgaccca tctgtggcga 1320 acagtggttc gaagcggagg aagccgatga agaccccagt gtaccatcac ccacagggta 1380 ccaaagaccc tctcccgacg acttggacct actggctgag ttcgagcagc agaatctatt 1440 aaacggcgca gaaggccaac gggaacgcca gggtgaacat gcgcacggcc cgaatcaaaa 1500 ccagactact tcaacccagc caccacctca ccaaccaagt ccacatgatg cggcacaatc 1560 gggcagcagc tcggaggctc ggaaaactga gagctcggat gaaccggaag taagctgtaa 1620 agatgaggaa gacttgagca gcggtacatc tgacggccac gtcactgatt ggagcgacag 1680 cgagagtgac tgcagtgatg acaagcatga ccagaatttt gacagcctct cactgtttga 1740 cactgctgac ttgcccgacc tagaggaagt agaagaggaa ccggatgcgg ctcacacaac 1800 gcaaacacca acaccggacg tgactgacga attgagtgct gtccaacaca cgcaaacacc 1860 acatgttgca gagtctcttg ttgacagtga cgtgttcgtt ggagaaacca ttgatgacga 1920 gacccaacaa ccagacacag tgccagctgt gcaaacgcga gagaacagca gatcgacaaa 1980 ggtcgccctg gaacctttcg atgaggaaac aatcgaaata ctcaaaatcc acggtttcac 2040 caacctcaaa ccacaacatg acggagaatt ccagattgca cccgttttct acaatcggct 2100 agctaaacac atacccacct atgaaggcat aaccaccaca acccagtccc aattcatagc 2160 tatggcacaa gcactgaaga ggaattgcta ccgttataaa ttggatgcta agcgtgccac 2220 agcattcatg tctgacgtta aaaacaacct aactggtttg gtgctaccca aactcgacag 2280 ggatttgcta acgtcttggg tagctcttgc ggaaaatgct aagaggagtg ttggacttat 2340 agtcattcat ggtgcaggtg gagctggaaa gagtagggca ctgcaagaac tgctgaggca 2400 tgggaaaatg gacatcaatg aagttaatat cgtggtaccc accatcaacc tcgctgtgga 2460 ttggaaaaga aaactgccaa gcatggatcc tagaagaatc atgacttttg aaaaagcgtg 2520 cgaacgtgag ggcaaatcca ttgtcatcat ggatgattac ggaaaattac ctgcgggcta 2580 tattgacgct tacctggcca tcaaattcaa cgttgagttg gtaattctca caggagacca 2640 gagacaatcc gttttccaca atgacaagag agactcgcaa atcgcgttgc taaactctaa 2700 cacggatcac tacaaacgat actgcgacta ctatctcaat gcgacgcatc gccaaccccg 2760 acgacttgcc aacccaatca aagtccacgc agaaagagaa gtaggtggcg ccgttaagca 2820 cgcgaccctc atacctacca atgccatgac gctcgtacca gctttcagaa gtcagtcgct 2880 gttaactgac ttaggcagac aagccatgac ttacgcgggt tgccagggcc tcacgcttcc 2940 ccacctctcc atcgttttag ataaggatac ccctttatgc tccgatgaag tgctgtatac 3000 agcactgtca cgcgcctcag aaacaatcac tttcatcaac acgcattcca ataacaaaga 3060 gtttttggac aaactcgact cgacaccata tctcaaaact ctgatatcag gagtgcggga 3120 agacgaacaa gctggtagag agcaaccacc accagaacca tctgtgcgtg acagccccac 3180 aaaaactcac atcccagttg ccaatgacag tgtgcaactc gaaggaaaaa tagaagccat 3240 ggaggacaag gacacccgcg aactttggtc gggtgaagaa aagacgaatc tcatgcaaac 3300 gcaggaccca gtggtgcaat tatttccaca ccaacaagcg aaggatgagg cgctctttaa 3360 aatcaccata aatgagagaa ttcgcttagc cactcctgag accaaccgga aagcactcac 3420 tgacacactc aacgcagggg acctgctttt tgaagcatat gcgagcttca tgaacgtgcc 3480 caaagaaact caagctttcg ataaacgctt atgggcacat tgcagacaac tcgccctgcg 3540 gacctattta tctaaaccga cagcgaatct tcagcaagga gctaagcgac aggatccaga 3600 tttcccggag aacgcgattg ctctattcaa caagtcacaa tgggtcaaga aattggagaa 3660 agtcggatgc cgatttaagg cggggcaaac tatctcagca ttcaagcaat cgacagtgtt 3720 gctcacaaca acgatggccc tctacctgcg gaaaaagagg gaaggtcacc aacccgacaa 3780 tgtattcata atgtgtgaga agacccccga gcagtttaat tcattcgtgc taacaaagtg 3840 ggacttcacc agacctaatt acacgtccga ctacacacaa tatgaccaat cccaagatgc 3900 agctttcctc aactttgagc ttaggaaagc aaggcacttt ggcgtaccgg aggaggtagt 3960 ggacttctac gcttttatca aaacacatgc taaaacattt ttgggcaatc ttgctgtgat 4020 gagactaagt ggggagggac caacttttga tgctaataca gagtgcaaca ttgcttatga 4080 tgcacttagg tttcaactcg actccactgt gaaagcttgc tatgcgggag acgacctggt 4140 tcgggacaaa gcatgtgatg aacgacctgg ctggaaatac tcggaaccct tgttttcact 4200 caaagccaaa cccctagtta caaacaaacc agacttttgt ggatggagac taactaagta 4260 tggcattgtg aaatcccccg tgcaacttta tcaatcactc cagttggcgc tgaggctcgg 4320 aaaagtggaa gaagtcaaga gaagttatgc cattgactac ctatttgcgt accgactggg 4380 agatcaactt tatgacatat tcgacgagga tgagctttca aaacaccagt tagtcaccag 4440 aacgttaatc aagaaaggca tgcaacctcc aagctcagga gaacacttgc ccactttcca 4500 tgtaacttct gacagactta tcagggatcc gagagccatc aaggtgtcaa cttttgagtc 4560 agacagaatc atattgccac tcgacatact agacgaccac ttctcgaaga gtgggagaac 4620 tgaccgtgca gaaatgactg aggaaagcaa ccgccgagcc gcagaaattg gcgcaacaac 4680 aaatgtagca cgtgaggact tgaccctcac ggacttattc ccggatgcat tcagatagtg 4740 taattatcta actatagttt aggaactaac tatcatatca atgtacaaat gtagaagccc 4800 gtgtgaatag gttaggtttt cctgcttgat tgaaatgaag actgtcctac tcttacaact 4860 attagacaac tcgaatttta taaggaccac aacacccata gcggacacca tcgttgtgca 4920 cggtgtgcca ggctgtggca agtccacctt aatcaaagac ctcgtcacta aacactccac 4980 aatcgcctac actctcggcg taccatacgg tcgttcactg atacactccg gcgtcaacca 5040 tatctcacga attgacgaca atcttcagaa ctttgaaacc agaattctag acgagtatca 5100 gctcgggaac gaagaaaccg ttaaagattt cacagtattg tttggtgacc ccttccaagg 5160 aactttccaa ttgccggccc actttatcaa gaggctctca catcgcgtcc cacggcaaat 5220 ttgcaactat ctgagatcac ttgattacga catcgttgga gaaactgaag gtgagattaa 5280 tttcccccca atttacgcag caaacgccac tggacccatt ggcaccgtct tacatcttgg 5340 acccgtctcc cgacaactga caaggacttt cgggatttgc tcaaagttac caactgaagt 5400 gcaaggtctc gagtttgagg agctgacact cgtctaccac tcttccgaac ttcaagccaa 5460 tcgtgagctt ttcttcgtgg cagtcacacg cgccaagcgc ttactcaacg tgcttactga 5520 ctccaaacac cgccctccca ccgcctaagc gcgttcatga gtttcacgcc acccccggac 5580 tacaatagag tttatcttac cctagcaata ggagcagcag ctggaatact cgtttatacc 5640 cttaggtcta accatctcac gcacgtaggg gacaacacac atcacttacc gcacggtggg 5700 cggtattgcg acggtaataa aagaattcac tacaacggac ctcaagctgg atcgtcccac 5760 gccttctcag tcctaccatt cttcgcagca atcacactca cccttgttat tcatttcctt 5820 agctgcagcc gccgccgtgt ttgtgtacgc tgttctgagt ctcattagtg gacagccggg 5880 ctgtgttgtc accatcaccg ggtctgcggt acaaatcact aactgtcctt tagagcacat 5940 accagacgtg gtaaagtcct tctcctggag cgcacatgac cattgtaaca actacttacg 6000 ttgaccaaac acgagaacgc atcaatgatt gcgtcaatgc ggctcgcaac gctgtgtgcc 6060 aaaatatcaa tattgtgcaa gctagcattg agcagcaagt ggaaaataca tccaatggca 6120 tcctcaatca cttttctgcg tggtgtgagt caattggcaa ccagattggg actttaccaa 6180 cagtagtcgg agtagttaac gagagaatcc aacacttaga acacacgctc acgttgagaa 6240 actggccaca cgacctgcaa ccgcctccac cgatgaacag ggtgctattc tcaaatgctg 6300 ccttagcttt ggaagcaact cgaaaattac tctcacatgt gccaccaact cgatataacc 6360 tgccacagac tactttgccg cttgatgaac tctacggcca attgcatgcc ctgcatcaga 6420 actctctaga atggttaact cacatcggca gtgacactga cagacttgtt gtagattttg 6480 ggacgttttc aagtacagcc gttgcaaatc atgatcgtat gacaacgcac ttagcaaata 6540 ttcgggatga gctgcgcact ctccgagacc taccacaact tctcaacagg ctactcaaac 6600 agcaagagct ccacctgcag actctcacag acacacaaaa agagattgct gctctcaaaa 6660 ctctcataca tcataatttg acccaatcac agacccagga gtccagtaca ccaagctcta 6720 gccagagcgg cgcgacaaca caccagccgc aaccgagtga tttgcaccca taccaagcgc 6780 gccatcccac aactcgctgc cgcacctatg gtaccttgat atataatggg tcaagtttac 6840 acatgccgat ggacatatta ggtaaaccgg ccagtacagc cctacagctg caagttgaca 6900 ttaaaccttc gccgggaggg accaacgtga cctacaaatt agccgataat ggagcgctgt 6960 tgtcaagcga cgagatattc acaccacaca agctgaataa gcctctaagt gacgctcttt 7020 ccttattaca tgataattgc ccaaacttca tctacaacaa caaagacggt cggctttgtt 7080 aagttgtagt gtagtttgaa tatgagtgga gacagcctat ctgacgatct cgtgaatgcc 7140 gccatgactg aaacgtcaac tcagggattg aaccaggccc cgtctgccca gggatcaaga 7200 ccgggacttg tatccggacc aggttcacaa acgcctagca agaatcccag accattctct 7260 gcgcaaggtg gcccgactgt cacaaatgaa ttgttgccga gtgagtccga gctggaggca 7320 gtagcgaatg acgtcacatc gaattccgta gctacacaga gcacagttcg cgaaatccta 7380 gacctacttc gtgcacgcaa gccaaacgct acgccaaaag acctcttttc ccttgcatgg 7440 gcttgctacc acaatggttc ctccaggtat accaacctag ccacggatgc gccgtgtgga 7500 atgtctcatg cagagctcaa agaccttgtt gaggaatttt gcaccctacg acaattctgc 7560 gggttttatg cgaaaacttg ttacgtaact ggacgacagc agaataaacc accggcaaat 7620 tgggcaagga aaggatttca ggatgagtcg aaattcgctg cttttgattt ctttaacgca 7680 gtgtcaagtg actcagcccc aaaccctcct ggcggcatgc gctttaaacc tacgcaagca 7740 gaaattcttg ggcactccct gaacgcgaaa atgtcaatca tcgagtcacg caaggctacc 7800 aacatggttt ccacacgagc tgatgtcata gcgcaacaac agattcacga acctcccaag 7860 cctctcatgt taacgttttg ataaactgcc acaatcatgc acccttataa tttaaattta 7920 ctttgctgcc tccacttctc aaaacccact ctcccgcttg aactaagact gtacatatac 7980 aacttagccg ccccaaactt gctattagga cgtaagatgc tacaaaataa gcccttccag 8040 ggcacttcca agtgtgctgc ccgccgcaga gcgaagcgtt ataacagatg tttcgactgt 8100 ggcggatatt tgctaaataa tcatgtgtgt aagcaattcc caactcgtgc cagtacaagc 8160 tgcttcaatg tcattcacga aggacctgct aagctatatg ctgaagggtc gttccgacgc 8220 gattcctttg ctgagcagct tatactgaac gatttggagt tgatgaagat acacaataat 8280 taggctttgc tcaagcctcc caccgggttt acagagctct ggacatggac aaagacaccc 8340 atgcttgttg atattactaa acttaccctg taacaacatt tgtccacggg acaaatgttg 8400 ttacagggta 8410 //