ID JQ899447; SV 1; linear; genomic RNA; STD; VRL; 8337 BP. XX AC JQ899447; XX DT 01-MAY-2013 (Rel. 116, Created) DT 01-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Garlic virus C isolate SW3.3A, complete genome. XX KW . XX OS Garlic virus C OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-8337 RA Wylie S.J., Li H., Jones M.G.K.; RT "Viruses of imported garlic in Australia"; RL Unpublished. XX RN [2] RP 1-8337 RA Wylie S.J., Li H., Jones M.G.K.; RT ; RL Submitted (04-APR-2012) to the INSDC. RL Plant Virology, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 0d7158e52b0d10e150c9f471aa6c722b. XX FH Key Location/Qualifiers FH FT source 1..8337 FT /organism="Garlic virus C" FT /host="Allium sativum" FT /isolate="SW3.3A" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Sep-2011" FT /db_xref="taxon:12431" FT 5'UTR 1..84 FT CDS 85..4674 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:M9PQ35" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:M9PQ35" FT /protein_id="AGG13294.1" FT /translation="MTAVQKLLDQISDPNARAAYSQECLSAAKNAATKAMTVAPYAVTQ FT TEALTLERIGITTSPFATTSHTHAADKIIENDCLEIISHYLPKDPITLIQLKRSKLHLL FT KRGPNDDIFQNYCHEPKDVLRFGLTNPHACPTVTTSCAVISDTLHFMSSQQLWTLFERN FT PALQRLYGTLVLPVEAIHKLPSLFPEIYKLEYYDKHFAYMPGGHGGGAYIHSYGTLKWL FT STAQIGSGSNHLSIEKIETKAAHHIVVIQRRRPELPWPLPPVWVFHASDYVRLPEIFYP FT KEANVQRPYPHVFIKRLQLYCFSVKAVSLRDIFAKIRQVLPTEELARFSTADLIRLANY FT LLFITGMQQTSDYQSPLMESLLGKICLSIRARIREFFQDLMGKSSYAALLTVTDVRPIY FT FTTKPVRRPVCGEQWFKEEEVEEDRVAPSPTGYQRPSPDDLDLLAEFEQQEIMKAQDDQ FT RNHQVEAYRKNHQQNMVDPQTQTSPIYDNERIDERSNAHKSAPTDGQNSPGRAREDQSD FT STSDGHVTDWSDSESDTDSHDQQSQTADDLLFDEADLPELEEIEPELEETQTEPSPAPE FT ESADLSACEDVSFNEPVEPCAESAAEPRGSDKLTKVKLEPLDEETVEILKIHGFTNLKP FT QHDGQFQISPVFYNRQARHLPHYDGIVTTTQSHFIDMARALKRSCYRYRLDAKRATAFM FT SDVKNNLTGLVLPKLDRDLLASWVALAENAKRSVGLIVIHGAGGAGKSRALQELLRHEK FT LDNNEVNIVVPTINLAADWKRKLPSMDPRRIMTFEKACEREGKSIVIMDDYGKLPAGYI FT DAYLAIKFNVELVILTGDQRQSVFHNDKKDSQIALLSSNTDYYKRYCDYYLNATHRQPQ FT RLANPIKVHAQREVGGAIKHATLIPPNAMTLVPAFRSQSLLTDLGRQAMTYAGCQGLTL FT PHLTIVLDKDTPLCSDEVLYTALSRASETITFVNTHSNNKEFLDKLDSTPYLKTLISGV FT REDEEAGREQPPPEPVVREGPTKTHIPISNNNVQLENKIETMEDKDTRELWSGEEKTNL FT MQTQDPVIQLFPHQQAKDEALFRITINERIRLATPEANKRALTETLNAGDLLFEAYASF FT MNVPRETQAFDKRLWAHCRQLALRTYLSKPTANLQQGAKRQDPDFPDNAIALFNKSQWV FT KKLEKVGCRFKAGQTISAFKQSTVLLTTTMALYLRKKREGHQPDNVFIMCEKTPEQFNS FT FVLTKWDFSRPNYTSDYTQYDQSQDAAFLNFELRKARHFGVPDEVVDFYAFIKTHAKTF FT LGNLAVMRLSGEGPTFDANTECNIAYDALRFQLDHTVKACYAGDDLVRDKACEERPGWK FT YSEPLFSLKAKPLVTNKPDFCGWRLTKYGIVKSPVQLYQSLQLALKLGKVEEVKRSYAI FT DYLFAYRLGDQLYDIFDEDEMAKHQLVTRTLIKKGMQPPSSGEHLPTFHVTSDRLIRDP FT RALKLSTFESDRIMLPLEIIDDHFTASNKADRGEMTEESNRRSTEASASSDHTGANATL FT TDLFPDAFR" FT CDS 4772..5488 FT /codon_start=1 FT /product="TGB1" FT /db_xref="GOA:M9PQ44" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:M9PQ44" FT /protein_id="AGG13295.1" FT /translation="MKIALLLQLLDNAGFVRTNLTPADTIVVHGVPGCGKSTLIKELIV FT GQSTVAYTLGVPYGRSLAHAGVKHISQVDNKFSDFETRILDEYQLGNEEHVKNFNVLFG FT DPFQGKFQLPAHYTKRLSHRVPRQICQYLKSLDYDIIGEREGELNFPPIFAANATGPVG FT TVLHLGPLSRQLTRTFGVCSKDPIAVQGLEFQELTLVYHSSELPSNRELFFVAVTRARR FT LLNVLTDAKPPVDLLR" FT CDS 5503..5814 FT /codon_start=1 FT /product="TGB2" FT /db_xref="GOA:M9PPX1" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:M9PPX1" FT /protein_id="AGG13296.1" FT /translation="MSFTPPPDNTKVYLTLAIGASAGILIYTLRTNQLAHVGDNTHHLP FT HGGRYCDGNKRIHYNGPQTGFFHIPSFLPFAAAIALTVVIHILSCSRRRVCVRCSESH" FT CDS 5922..7022 FT /codon_start=1 FT /product="40 kDa protein" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:M9PQ25" FT /protein_id="AGG13297.1" FT /translation="MTIVTTSYIDETRERINSCVNAARNTVCQNINIVQANIEQNIENT FT SSSIINHFTAWCESIGGQIGTLPTTVERVNESIHHLEHVLALRVQPQAPQLAPPPQRIL FT FTNANAALEATRGLIAHVPPIRYALPPTTLPLDELYGQLHALHQNSLEWLTHIGSDTDQ FT LLLDLRAFANTTAANHSQVANHVTSIRDELHALRGLPGLVNTLLKQHEANAQTLNTLMK FT DVAALKTLVMHSQTCPPNQTSNSTTSSGDKTTAHQISDLEPYQAQHPKTRCRTYGTIIY FT NGSSLHMPMDILGKPASTALQLHVAVKPSAQGTSVTYRLADNGALLLSDEIVVPNKLTE FT PLSDALSLLHSKCRNFIYTNKGNSLC" FT CDS 7042..7821 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:M9PPM5" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:M9PPM5" FT /protein_id="AGG13298.1" FT /translation="MNKDDLSDDLVSAAMTDSSSQGFNPSTSAQGTRPGVVSGPNPPAP FT SRNPRPSSTQGGTTVNDELLPSESELEAVANDVTSNSVATQSTIREILDLLRARRPNAN FT PKDLFSLAWACYHNGSSRYTNLATDAPCGMSHAELKDLVEEFCTLRQFCGFYAKTCYVT FT GKQQNKPPANWARKGFQDDSKFAAFDFFNAVSSDSAPNPPGGMRFKPTQAEILGHSLNA FT KMSIIESRKSSNMVSTRADVIAQQQIHEPPKPLMLTF" FT CDS 7837..8223 FT /codon_start=1 FT /product="NTBP" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:G9F800" FT /protein_id="AGG13299.1" FT /translation="MHPYNLNLLCCLHFSKPTLPSELRLYIYSLATLNLKLGRKMFQNK FT PFQGTSKCAARRRAKRYNRCFDCGSYLQNNHVCKQFQTRASTSCFSVIHEGPAKLYAEG FT SFRRDSFAEQLILNDLELIKLYNN" FT 3'UTR 8224..8337 XX SQ Sequence 8337 BP; 2432 A; 2152 C; 1806 G; 1947 T; 0 other; cacaaactac actgtacaaa atcaaacttc aatactacct gataaggaaa cttagcgaag 60 ccctgcacat ctagttgttg aagtatgacc gctgtacaaa aactcctaga ccaaatctct 120 gaccccaatg cgcgcgcagc atactctcag gaatgcctgt cagccgcaaa aaatgcagct 180 accaaggcga tgactgtagc tccctatgct gtcacacaaa cggaagcact cactttagag 240 cgcattggaa taactacctc accatttgct accacttcac acacacacgc ggctgataaa 300 attatcgaaa atgattgcct tgaaattatt agccactact tgcctaaaga tcccatcact 360 ttgatacaac tgaagcgatc aaagttacac ctactcaaaa gggggcccaa tgacgacatc 420 ttccagaatt attgccacga accaaaagat gttctgagat ttgggttaac taaccctcat 480 gcttgtccta ccgtgacaac atcatgcgcc gttatatccg acaccttaca ctttatgtca 540 tcgcaacaat tgtggacatt atttgagcgg aatccagctt tgcaacggtt gtatggcact 600 ctcgtcttac cagttgaagc catccacaaa ctgcccagtc ttttcccaga aatttacaag 660 cttgaatatt atgataaaca cttcgcttat atgcctggag gacatggagg aggagcctac 720 atccactcgt acggcactct caaatggttg agcactgctc agattggttc gggatcaaac 780 cacttgagca ttgaaaagat tgagacgaaa gctgcacacc acatcgtggt catccaacgc 840 aggagaccgg agttgccatg gccattaccg cctgtgtggg tatttcatgc atctgactac 900 gttagactac ccgaaatctt ctatcctaaa gaagctaacg tgcaaagacc ctatccacat 960 gtgtttataa aacgcctgca actctattgc ttttctgtca aagcagtttc attgcgcgac 1020 atcttcgcga aaattcgaca ggttttacca accgaggaac tcgctcggtt ctccacagct 1080 gacttaatac ggttagcaaa ctacctactc ttcataactg gtatgcagca gaccagtgac 1140 tatcaatccc cgctgatgga aagcttgctt ggaaaaatat gcttgtcgat acgagcaaga 1200 atccgagagt ttttccagga tttgatgggc aaatcgtctt acgctgcatt actgacagtc 1260 acagacgtgc gccccatata cttcacaacc aaaccggtcc gtagaccagt ttgcggggag 1320 caatggttca aggaggagga agttgaagag gaccgagtcg cgccttcacc cactggttat 1380 caaagaccat cacctgacga cctggacttg ctggcagaat ttgagcaaca ggagatcatg 1440 aaagctcaag atgaccaacg caaccatcaa gttgaagcat atcgcaaaaa tcatcaacaa 1500 aatatggttg acccacagac ccaaacctct ccaatatatg ataacgaacg aattgatgag 1560 aggtccaacg cgcacaaatc tgcacccacc gacggacaaa attcccctgg cagagctcgg 1620 gaagatcaga gtgacagcac gtccgatggg catgttaccg actggagcga cagtgagagt 1680 gacacggata gccacgacca gcaatcacaa actgcagatg acctcctttt tgacgaagct 1740 gatttacctg aattggagga gattgaacct gagttggaag aaacgcagac ggagccgagt 1800 ccagcacctg aggagagcgc agacttgagt gcatgtgaag atgtttcctt taacgaaccc 1860 gtggaaccat gtgcagagtc ggcagcagaa ccgcgaggat ctgacaaatt aacaaaagtc 1920 aagttggaac cactggatga ggagacagtt gagatactca aaatccatgg cttcactaat 1980 cttaagccac agcatgatgg ccagttccaa atttccccgg tgttctacaa tcggcaagca 2040 aggcacttgc cacactatga tggaatagtc accacaaccc agtcgcactt catagacatg 2100 gcgagagcac tgaaacggag ttgctaccgt tatagattag atgcaaagcg ggccacggca 2160 ttcatgtcag acgtgaagaa caatttaact ggcttggttt tgccgaaact cgacagggat 2220 ttgctggcat catgggtggc cctagcggag aatgccaaaa ggagcgttgg gctcatcgtg 2280 atccacggtg caggcggagc agggaaaagt agggcactgc aagagctgct aaggcacgaa 2340 aaattagata acaatgaagt caacatcgtg gtgcccacca tcaatctcgc cgcagactgg 2400 aagaggaaac tgccaagcat ggaccctcgg cggatcatga catttgagaa agcgtgtgaa 2460 cgagaaggca aatcaatcgt cataatggat gactatggga aattgcctgc ggggtatatt 2520 gacgcctacc tggccattaa attcaacgtt gagcttgtga ttctcactgg cgaccaaagg 2580 caatctgtct tccataatga caagaaggac tctcagatag cgttgctcag ctctaatacg 2640 gactattaca aacgatactg tgactactat ctcaacgcga cgcatcgaca gccccaacgc 2700 ctcgccaacc ccattaaagt tcacgcgcaa agggaagtag gtggagcgat taagcatgcc 2760 accctcatac cacctaacgc catgacactt gtaccagctt tccgtagtca gtcactactg 2820 actgatctgg gtcgccaggc gatgacctat gctggatgcc aaggacttac gcttccccat 2880 cttaccattg tgttggacaa ggacacgcct ttgtgctccg acgaggtatt atacacggca 2940 ttatcaaggg cgtcggagac aattacattc gtcaacaccc actccaataa caaagagttc 3000 ctagacaagc ttgactcgac gccgtatctt aagactctaa tatctggggt gcgggaggat 3060 gaagaagctg gccgagaaca acctccccca gagccagttg tacgcgaagg gcccacaaaa 3120 actcacatcc caatctctaa taataatgtt caacttgaaa acaaaataga gaccatggaa 3180 gataaagaca ctcgcgaact ctggtcaggg gaggagaaga caaacctgat gcagacacaa 3240 gatccggtga tacagctctt tccccatcaa caagctaagg acgaagccct cttcagaatc 3300 actataaacg agcgaattcg tttagccact cctgaagcta ataagagagc actcacggag 3360 accctcaacg caggagattt gctctttgag gcatacgcaa gtttcatgaa cgtgccccgg 3420 gaaactcaag ctttcgataa acgtttgtgg gcacattgta ggcaacttgc tctccgtacc 3480 tatctctcca aaccaactgc gaatcttcag caaggagcaa aacgacagga cccagacttc 3540 ccagataatg caattgcact cttcaacaaa tcacaatggg tcaagaaatt ggagaaggta 3600 gggtgcagat tcaaagcagg gcaaaccata tcggcattca agcaatcgac ggtgctgctt 3660 accacaacta tggcccttta cctgcggaag aagagggaag gtcaccagcc cgacaatgtt 3720 ttcataatgt gtgagaagac gcctgagcag tttaattcgt tcgtgctcac caagtgggac 3780 ttcagcagac ccaattatac atccgactat acgcaatacg atcaatctca agacgcagcg 3840 ttcctcaact ttgaattgag gaaagcaagg cattttgggg tgcctgacga agtggtagat 3900 ttctacgctt tcatcaaaac gcacgctaaa acatttctgg gtaatctcgc cgtaatgaga 3960 ttgagtgggg aagggccaac tttcgatgct aatacagagt gcaacatcgc ttacgatgcc 4020 ctgagatttc agctggacca tacagtcaaa gcctgttatg cgggtgacga tctggttcgt 4080 gataaggcct gtgaagaacg gcccggttgg aaatattccg aacctttgtt ctcacttaag 4140 gctaagcctc tggtcacgaa taagccagat ttctgtggat ggcggctcac gaagtacgga 4200 atagtgaaat ctccggtgca actgtatcaa tcactgcagt tggcgttgaa gctcggtaaa 4260 gtggaagagg tgaaacgaag ctatgccatt gactacctat tcgcataccg cctgggtgac 4320 caactgtacg acatatttga cgaggacgaa atggccaaac accaactcgt cactagaact 4380 ttaattaaga aagggatgca gcctccaagc tcaggggagc acctacctac cttccacgta 4440 acttctgata ggctcatcag agaccctagg gctctcaaac tgtcaacttt cgagtctgac 4500 agaatcatgc taccccttga aataattgac gatcacttca ccgcaagtaa caaggctgat 4560 cgtggggaga tgactgaaga gagcaatagg cgatctacgg aagccagtgc gtcgtcagac 4620 catacgggtg cgaatgctac tctcacagac ctattccccg acgcattccg atagagtagc 4680 tacgggtata tagcttacat actaactgct aatttaatca tgtaaattaa gcaaccatat 4740 gtataggtta ggttttccag cttagttcga aatgaagatt gctctgctat tacaattgtt 4800 agataacgcg ggtttcgtca ggaccaattt aacgccagca gacaccatag ttgtgcacgg 4860 agtaccaggt tgcggcaaat caaccttaat caaggaactt atcgtaggac aatccacggt 4920 tgcctacact ttaggtgtac cttacggtcg ctcacttgcc cacgctggtg ttaaacacat 4980 ctcacaagtt gataacaagt ttagcgactt tgaaactagg attctcgacg agtaccaact 5040 cggaaacgaa gagcacgtca agaacttcaa cgttctgttc ggcgacccct tccaaggcaa 5100 gtttcagctg ccagcccatt acaccaagag actctcgcat cgtgttccgc gtcaaatctg 5160 tcagtacttg aaatcgctag actacgacat cattggagag cgtgagggag agttgaactt 5220 tcctccaatc tttgccgcga acgctaccgg tcccgtcggc accgttctgc acctgggtcc 5280 cttatcccgc caattaacga gaacatttgg agtttgctca aaagatccca tagcagtgca 5340 aggccttgag tttcaggaac taaccctagt ttatcactct tctgagcttc catccaatcg 5400 tgaacttttc ttcgtggcag tcacacgcgc tcgacgtttg cttaacgtgc tcaccgacgc 5460 taaaccacct gttgatctcc ttcgatagca tcagacaatt ctatgagttt cactccccca 5520 ccggataata ccaaagttta tttaacatta gctattggcg catctgcggg tatactcatc 5580 tacactctta gaaccaacca acttgcgcac gtgggagaca acacacatca cttaccacac 5640 ggagggcgat actgcgacgg taacaaaaga attcattaca acggtccaca aactggattc 5700 ttccacatcc cttccttcct accgtttgcg gcagcaatcg cactcacagt ggttattcat 5760 attcttagct gtagccgccg ccgtgtttgt gtacgctgct ctgagtctca ttagtggtca 5820 gtcagggtgc atcgttacca tcaccggatc cgccgtgcaa attaccaact gccccttaga 5880 acatatacca gatgtggtaa aatctttttc ctggagcgct aatgaccatt gtgacaactt 5940 cctacattga cgaaactcgt gaacgtatta atagttgcgt caatgctgcc cgcaacactg 6000 tatgccaaaa cattaacatt gtgcaagcca acattgagca aaatattgag aacacatcaa 6060 gcagcatcat taaccacttc actgcgtggt gtgaatcaat tggcggccag attggaactt 6120 tgcccacaac tgtggaacgt gttaatgaga gtatccatca tctggaacac gtgcttgccc 6180 tgagagtcca accacaagcc ccgcaattag ccccgccgcc acagaggata ctgttcacaa 6240 acgccaatgc agcattggaa gcgacacggg gccttattgc acacgtaccg ccgattaggt 6300 atgccctacc accaactacg ttaccacttg atgaacttta tggccaacta cacgctttgc 6360 accagaactc cttagaatgg ctcacccaca tcggaagcga cacggaccag ctactcctag 6420 acttaagagc atttgcaaac actactgctg caaatcacag ccaggtcgca aatcatgtca 6480 caagcattcg agatgagtta cacgccctcc gaggtctgcc cggtcttgtg aacaccctgc 6540 tcaaacaaca cgaggctaac gcccaaactc tcaacaccct gatgaaggat gtcgccgccc 6600 ttaaaacgtt ggttatgcac agccaaactt gcccgccgaa ccaaacatcc aacagcacaa 6660 cctccagtgg ggacaagacc acggcacacc agataagtga tttggaacca taccaagctc 6720 aacaccccaa aacgcgttgc cggacttatg gaaccataat ttacaacggg tcgagtctcc 6780 atatgccgat ggatattttg ggtaaaccag ctagcacggc cttgcaactg catgttgcag 6840 ttaaaccttc agcccaagga actagcgtaa cctatagact agctgataat ggggcactat 6900 tgctgagcga cgagatcgta gtaccgaata aactgaccga acctcttagt gacgcactct 6960 ctttgcttca tagcaagtgt aggaatttca tttacactaa caagggcaat agcctttgtt 7020 aagttgttac gtagtttgaa tatgaataaa gacgacctat cagacgacct tgtgagtgct 7080 gctatgactg actcgtcttc tcaaggcttt aatccatcca catctgcaca aggaacccgg 7140 ccaggagttg tctcaggacc aaatccccct gcccccagta gaaaccctcg accttcctct 7200 acgcaaggtg gaacaactgt taatgatgag ctgttgccga gcgaaagtga attggaagca 7260 gtcgcgaatg acgtgacatc aaactctgtg gccacgcaaa gcacaattcg agagatccta 7320 gacctacttc gagctcgtag accaaatgcc aacccaaagg atctcttctc acttgcgtgg 7380 gcctgttatc acaacggttc atctcgatat actaatctcg ccacagacgc tccgtgcggg 7440 atgtcccatg ctgaactcaa agacttagtt gaggaatttt gcaccttgag acaattttgc 7500 ggcttctatg cgaaaacttg ttacgtaacc gggaagcaac aaaataagcc gccggcaaac 7560 tgggccagga agggtttcca agacgactca aaatttgctg catttgactt cttcaatgcc 7620 gtttctagtg actcagctcc aaatccgcca ggtggaatgc gtttcaagcc cactcaagct 7680 gaaattcttg gacattccct gaacgctaag atgtctatta tcgagtcacg caaatcatct 7740 aatatggtct caacacgagc agatgtcatt gcacaacaac aaattcatga gcctcctaag 7800 cctctcatgc tgacgttctg atagccttac acaactatgc atccttacaa cttgaaccta 7860 ctttgctgtc ttcacttctc aaaacccact ctccccagcg aactaagact gtacatatat 7920 agcttagcta ctttgaattt gaaattagga cgtaagatgt ttcaaaataa acccttccag 7980 ggaacttcta agtgtgccgc acgccgtaga gcgaaacgtt ataataggtg tttcgactgc 8040 ggcagttact tgcaaaataa ccatgtgtgt aaacaattcc aaacacgggc tagtacgagt 8100 tgctttagcg ttattcacga aggacctgct aagctatatg ctgaagggtc tttccgacgc 8160 gactctttcg ccgaacaact tatactgaac gatttggaat tgataaaatt atataataac 8220 taggctctgc tcgagcctcc cactgggttt acagagctct ggacatggac aaagacaccc 8280 atgcttgttg atattactaa acttaccctg taacaacatt tgtccacggg acaaaac 8337 //