ID JQ899446; SV 1; linear; genomic RNA; STD; VRL; 5895 BP. XX AC JQ899446; XX DT 01-MAY-2013 (Rel. 116, Created) DT 01-MAY-2013 (Rel. 116, Last updated, Version 1) XX DE Garlic virus A isolate SW3.1B, partial genome. XX KW . XX OS Garlic virus A OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-5895 RA Wylie S.J., Li H., Jones M.G.K.; RT "Viruses of imported garlic in Australia"; RL Unpublished. XX RN [2] RP 1-5895 RA Wylie S.J., Li H., Jones M.G.K.; RT ; RL Submitted (04-APR-2012) to the INSDC. RL Plant Virology, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; de40397d7dce828b5f52153c9fb6eccb. XX FH Key Location/Qualifiers FH FT source 1..5895 FT /organism="Garlic virus A" FT /host="Allium sativum" FT /isolate="SW3.1B" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="S. Wylie" FT /collection_date="01-Sep-2011" FT /db_xref="taxon:12433" FT CDS <1..2283 FT /codon_start=1 FT /product="replicase" FT /db_xref="GOA:M9PPM3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:M9PPM3" FT /protein_id="AGG13288.1" FT /translation="ANDWKKKLPAMDPRRVMTFEKACERECKSVTIFDDYGKLPAGFVD FT AYLAIKVNVELVILTGDQRQSTHHQDRESQIALLSSNVAHFSPYTDYYINATHRQPKRL FT ANPIKVHAERLIGGSVHRSDLVPDRAMVLVPAFRSQSLLTDLGRQAMTYAGCQGLTLNH FT LTIVLDKDTPLCSEEVLYTAFSRASESITFVNTHSDNPEFLAKLDATPYLKTLISWVRE FT DEQAGSSNPPPEPNVREEPTKTHIPVTNDRVQLDDKVETMEDKDTRELWSGEEKTNLMQ FT TQDPIVQLFPHQQSKDEALFKITIDERIRTADPEKNAKSLQHTLNAGDLLFEAYAQFMK FT VPAEPQTFDKRLWTHCRQLALRTYLSKPAANLQQGASRQDPDFPDNAIALFNKSQWVKK FT LEKVGAKFKAGQTISAFKQQVVLLTTTMALYLRKKREQHQPDNVFIMCERTPEQFNNFV FT LTKWDFSRPNYTTDYTQYDQSQDAPFLNFELRKARHLGVPDEVLSFYKFIKTHAKTFVG FT NLAIMRLSGEGPTFDANTECNIAYDALRFRLDDNVRACYAGDDLVRDRACEERAGWVYS FT ERLFSLKAKPLVTSKPDFCGWRLTPYGIVKSPIQLYQSLQLALRLEKVEDVKRSYAIDY FT LFAYRLGDKLYDIFDEEELEKHQLVTRTLIKKGMQPPESGNHLPTFHITSDRLIRDPRA FT IKIQSYESDRLLLHQPVLIDDYIPKNPAGDGPRQVTSVTAHQEMTVACQNGVEDLLTAR FT WFGRPRI" FT CDS 2406..3161 FT /codon_start=1 FT /product="TGB1" FT /db_xref="GOA:M9PQ34" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:M9PQ34" FT /protein_id="AGG13289.1" FT /translation="MLEMKTDLLLQIIANNDFSRTAEPLTEPLVVHGVPGSGKSTLVKA FT LILNRSTTALTLGSPYGQTLTHPGVEKFTKGRPIPNISHCETRILDEYQLSEGSDTSPF FT NLLIGDPFQGTLHLKAHYIKSHSYRVPAPICHFLRTLDYEIFGSRPGEIVKLPVYSKNP FT TAPSGQVLHLGAASCSLTRRHNVHSKSPADVQGLEFPEVTLVYHSTERLRSRADFYIAA FT TRALNRLCIITDEILPALENSAEPTTTCG" FT CDS 3158..3469 FT /codon_start=1 FT /product="TGB2" FT /db_xref="GOA:Q67691" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:Q67691" FT /protein_id="AGG13290.1" FT /translation="MSFAPPPDYSKAYITLAGGAALGILVYTLRSDHLPHVGDNTHHLP FT HGGRYCDGNKQIHYFKPNSGSPSGGSYIPPLIIFTLTLAILLLSRPRRRICIRCSESH" FT CDS 3580..4674 FT /codon_start=1 FT /product="40 kDa protein" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:M9PPW9" FT /protein_id="AGG13291.1" FT /translation="MVIVTTFHIDQARDLVINNSNSIRDCLLNKLHTISNEVRTVGAHV FT DSSIAFNRINLQTIYNHLSGNNNSSIQMPTAANPDPLLDPLETGTATVFRTFFSNAALA FT VDATRTLLGYVPPARYNIPPSTLPLDELYGQLHALHQNTLEWLTHISHNVDSILTNLNP FT INSPSQNNSLSQIHAALTYLTRTVDSLYSNSQSTSISTDHPGSSKPLTKLEGIEQSLEA FT LHRKIDELSSSLANTTPGPSVTPNPSAPLPTNAARNLPIYQAAHPSKPCRTYGTILLDG FT VHSKIPMDIIGRPASTALRLELRVTPSDQSTTVSYKIFDDGYLLTSNDIETNHRLQHYP FT SDCLALLHQKCPNFIYKIKTHDLC" FT CDS 4732..5490 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:M9PQ24" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:M9PQ24" FT /protein_id="AGG13292.1" FT /translation="MNNPVDPSTSQQMSGTTGQVSQPRPNVNPFGQSQTRPLGNRDPQN FT NSNASNDSDALMPAVTDFETLTKDVESNSVASRLIIRDILDMLQAKRQGATPKDLFSLA FT WTCYHNGSSRFVTLTTDAPCGMAHSELKDIVENSCTLRQFCGFYAKACYVAGKQQNKPP FT ANWSRKGYQEDSKFAAFDFFNAVLSDSSPSPPGGMRFKPTDAEILAHSMNAKMSIVESR FT RATNMVSTRADLLAQQQIHEQPKPPMITFS" FT CDS 5487..5882 FT /codon_start=1 FT /product="NTBP" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:M9PPM4" FT /protein_id="AGG13293.1" FT /translation="MIPQDFNILCCLHFAKPFIPQDLKAHLFFTCVNECKLVRIASKNK FT PFLGTSKCAQRRRAKRYNRCFECGAYLLDNHKCRIFVSRAQSDVLAVIHEGPAKLHAER FT TYRPNSDAALLIESDLQYIKLFQNRKA" FT 3'UTR 5883..5895 XX SQ Sequence 5895 BP; 1653 A; 1705 C; 1175 G; 1362 T; 0 other; gccaacgact ggaagaaaaa actgcctgcc atggacccgc gtcgagtcat gaccttcgaa 60 aaagcttgtg agcgagagtg caaaagcgta actatttttg atgactacgg caaactgcca 120 gctggcttcg tagatgctta cctcgctatt aaagtaaacg ttgagctggt tatactaacg 180 ggcgaccagc gccagtctac tcaccatcaa gatagggagt cacagatagc actcctaagt 240 tccaacgtgg cccatttctc accatacact gactactaca tcaacgccac acacagacag 300 cccaaacgtt tagcaaatcc cattaaagtg catgctgaga gactgattgg aggctccgtt 360 cacagatccg acctagtgcc tgatcgagcg atggtactag tgcctgcctt taggagccag 420 tctttactga ctgatctagg ccgtcaagct atgacatacg cgggatgcca agggctcacc 480 ctcaaccact tgactatcgt gctcgacaaa gacactcccc tctgctccga agaagttctc 540 tatacagcct tttcaagagc atccgagtcc atcacttttg tgaacacaca ctcggacaac 600 cctgagtttc tcgcgaaatt ggacgctacc ccttacctca aaactctgat ctcatgggtt 660 agggaggacg agcaagctgg tagttcaaac ccgcccccgg agccaaacgt ccgcgaagag 720 cccaccaaga cgcacatccc cgttaccaac gatcgagtgc agttagatga taaagtcgag 780 acaatggaag acaaagacac gcgtgaactg tggtctggag aggagaaaac taacctcatg 840 caaacccagg accctattgt gcaactcttc cctcaccaac aatccaagga tgaagctttg 900 ttcaagatca ccatagatga gaggatccgg acggccgatc ctgagaagaa cgctaagagt 960 ctgcagcaca cactcaacgc tggcgactta ctattcgaag cgtatgccca attcatgaaa 1020 gtgccagcgg aacctcaaac ttttgacaaa cggctgtgga cacactgcag acaacttgca 1080 ctgagaacgt acctatccaa accggctgct aacttgcaac aaggtgcttc ccgacaagac 1140 ccagacttcc cggacaacgc tattgccctt ttcaacaagt cacaatgggt caagaaactt 1200 gaaaaagtcg gcgccaagtt caaagcgggc caaacaattt ccgccttcaa gcagcaagtt 1260 gtcctactca caacgaccat ggctctttac cttcgaaaga aaagagagca gcatcagccg 1320 gataacgttt tcataatgtg tgagcggacc cccgagcagt ttaacaactt tgttttaacc 1380 aaatgggact tctcgcgacc taattatacc accgactaca cacagtatga ccagtctcaa 1440 gacgccccat ttctcaattt cgaactcaga aaagcgcgtc accttggagt acctgacgaa 1500 gtgttatctt tctacaagtt catcaaaact cacgccaaaa ccttcgttgg caacttagct 1560 atcatgcgtc tcagcggaga gggcccaaca ttcgatgcca acactgagtg caacattgcc 1620 tatgacgctc ttcgctttcg cctggatgac aatgtccgtg cttgctatgc cggagacgac 1680 ttagtgcgtg atcgagcttg cgaagaacga gccggatggg tatactctga acgtctcttt 1740 agcctcaaag ctaaaccact agttaccagc aaacccgact tctgcggttg gagactcaca 1800 ccttacggaa tagtgaaatc ccccatccag ctgtatcagt cgcttcagtt agctttgcgt 1860 ctcgaaaaag ttgaagacgt taaaagaagt tacgcgatag actacctctt cgcctacagg 1920 ctcggtgata aattgtacga tatctttgac gaagaagagc tcgaaaaaca ccagttggta 1980 accagaacgc tcattaagaa aggtatgcaa ccgccggaat ctggcaatca cctgccaaca 2040 ttccatataa cctccgaccg gctaatccgt gacccgcgag ctatcaaaat ccaatcttac 2100 gagagcgaca gactcctcct acaccaacca gtcctgattg acgactacat cccaaagaac 2160 ccggcaggtg acggtcccag acaagtgact tctgtgaccg cacaccagga gatgactgtg 2220 gcgtgccaaa atggagttga ggaccttcta actgcccggt ggttcggacg accaagaatt 2280 tgacatccta cgctaactga ccttagaacg gctgatttag tctaaccttg acttagttgc 2340 gtgtttagca tcttctcaac tcacttcatt tgctgacaac ctttgtagct agttatgttc 2400 tagatatgct cgaaatgaag actgacctcc tactacagat tatagctaac aacgactttt 2460 cccgcactgc tgaaccgctt acagagccgc tcgtcgtaca cggtgtccca ggctctggca 2520 aatccacttt ggttaaagcc ttgatactta accgatccac taccgctctt acactcggtt 2580 ccccttacgg ccaaactctc acacacccag gggtcgagaa gttcacgaaa ggaagaccca 2640 tcccaaatat ctcacactgc gaaacaagga ttctcgacga gtatcaatta agtgaaggaa 2700 gtgacaccag ccccttcaat ctcctcattg gagacccttt ccagggcaca ctgcacctaa 2760 aagcacacta cataaagagt cattcgtacc gcgtgccggc acccatctgt cacttcttac 2820 gcaccctcga ctacgaaata ttcggatcac gacctggaga gattgtaaaa ctcccagtgt 2880 acagcaagaa tccaaccgcg ccgagcgggc aagtgctaca ccttggcgct gcctcctgca 2940 gtctgaccag acgacacaac gtccactcca aatctcccgc tgacgtccag ggccttgaat 3000 tcccagaggt cactctagtg tatcattcta ctgaacgcct aagatcccgc gccgacttct 3060 acattgctgc tacgcgtgcc ctcaatcgct tgtgcataat cactgacgaa atactacctg 3120 ctctcgaaaa ctctgctgag ccaaccacca cctgcggatg agttttgcgc caccaccgga 3180 ctactctaag gcatatatca cactagctgg aggcgccgcc cttggaatac ttgtttacac 3240 gctcaggtcc gaccacttac cgcacgtagg ggacaacact caccacttac cccacggtgg 3300 tcgctactgt gacggcaaca agcaaatcca ctacttcaaa cccaattctg gctctccatc 3360 aggaggatcc tacattcccc cactcatcat cttcaccctc actctggcca tacttcttct 3420 tagccgtcct cgccgccgca tctgcatacg ctgctctgag tctcattaaa ggtgtgccgc 3480 aagggtgcgt tatcactata accggctcaa ccgtgcaagt ttctaactgt cctctagaaa 3540 agatcccggc cgtagttgaa tcctttcgct ggagtagcca tggtaattgt aaccaccttc 3600 cacatcgacc aagctcggga tttggttatc aacaactcaa acagcattag ggactgctta 3660 ctcaacaagt tgcacacaat ttcgaatgag gtgcgcactg ttggcgctca tgtcgacagc 3720 tccattgcct tcaacagaat caacttgcag actatctaca accatctgag tggtaataac 3780 aatagctcca tccaaatgcc aacggctgcg aaccccgacc cattactcga cccgttggaa 3840 accggaactg ctaccgtctt ccgcactttc ttttcgaacg cagcacttgc tgtagacgct 3900 acccgcacct tactaggtta cgtacctccg gccagataca atataccacc atcgaccctt 3960 cctcttgatg aactttatgg gcaactgcac gcactgcacc aaaatacact ggaatggctg 4020 acacacatta gccataacgt cgactccatt ttaacaaatt taaatccaat caactccccg 4080 tcacaaaaca actccttaag ccaaatccat gcggctctaa catatttgac caggacagtt 4140 gacagtctat attcaaactc acaatcgact agtataagca cagaccatcc tggttcctca 4200 aaacctctta caaagcttga agggattgag caaagcttag aggcactaca ccgcaaaatt 4260 gacgaacttt cttcgtctct cgcaaatacc acccctgggc cgagtgtcac gccgaacccc 4320 tccgcaccac tgccaaccaa tgctgcgagg aatctaccca tctatcaagc tgcccacccc 4380 tccaaaccat gcagaacgta cggaactata cttcttgatg gagtccactc caaaataccc 4440 atggacatca ttggacgacc agcttccaca gctctacgac ttgaacttcg cgtcacaccc 4500 agtgatcaat ctaccactgt tagttacaag atcttcgacg atgggtatct gttgacttca 4560 aacgacatag aaacaaacca cagattacag cattacccta gtgactgtct cgcgctccta 4620 catcagaagt gtccgaattt catctataaa attaagacgc atgatctttg ttaagttaac 4680 tgggagggtg aattagatga gtagtgagga actagtttaa tctgaacctt gatgaacaat 4740 cctgttgatc cgagcacgtc acaacaaatg tccggtacta cgggtcaagt tagccagcct 4800 cgacccaacg tgaacccctt tggtcagagt cagacccgcc cccttggcaa tcgtgacccg 4860 caaaataata gtaatgcaag taacgactcc gacgcactca tgcccgctgt gaccgacttt 4920 gagactctca ctaaagatgt cgaatccaac tcagtagctt caaggttaat tattcgcgac 4980 atacttgaca tgctacaagc caagcgacaa ggagccaccc caaaagacct tttctcacta 5040 gcctggacct gctaccacaa cggttcatcg cgatttgtta ccctgaccac tgatgcgcct 5100 tgcggcatgg cgcactcgga actcaaagac atcgttgaaa actcctgtac tctaagacag 5160 ttttgcggtt tttatgctaa agcctgctac gtcgcgggca aacaacaaaa caagccccct 5220 gccaattggt ctaggaaagg ttatcaggaa gactcaaaat ttgccgcttt cgacttcttt 5280 aacgctgtac tcagcgactc ttctccgagt cctcccggag gtatgagatt taaacctaca 5340 gacgccgaaa ttctcgcgca ttctatgaat gctaagatgt ctattgtaga atctaggcgc 5400 gccaccaaca tggtctccac tcgcgcggat ttactcgcac aacaacaaat acatgagcag 5460 cctaaacctc caatgatcac gttctcatga ttcctcaaga ctttaatatc ctttgctgcc 5520 tacactttgc caaacccttc atccctcaag acctcaaagc tcatctcttc ttcacttgcg 5580 tcaacgaatg taaattagta agaatagcta gtaaaaataa gccatttcta ggcacttcta 5640 agtgtgctca gcgccgcaga gcgaaacgct ataataggtg tttcgaatgc ggtgcctatt 5700 tactagataa ccataaatgt agaatctttg tatcacgtgc tcaatcggat gtgctagccg 5760 tcatacacga gggacccgct aagctacatg ctgaaaggac ctacaggcca aattctgacg 5820 ctgcgctgct cattgagagt gatctacagt acatcaaact tttccaaaat cgtaaggctt 5880 gacccaagcc tccca 5895 //