ID JQ898333; SV 2; circular; genomic DNA; STD; VRL; 2818 BP. XX AC JQ898333; XX DT 09-SEP-2012 (Rel. 114, Created) DT 24-OCT-2012 (Rel. 114, Last updated, Version 3) XX DE Nepavirus isolate NepaV, complete genome. XX KW . XX OS Nepavirus OC Viruses; unclassified viruses; unclassified DNA viruses; OC unclassified ssDNA viruses. XX RN [1] RP 1-2818 RX PUBMED; 22933275. RA Ng T.F., Marine R., Wang C., Simmonds P., Kapusinszky B., Bodhidatta L., RA Oderinde B.S., Wommack K.E., Delwart E.; RT "High variety of known and new RNA and DNA viruses of diverse origins in RT untreated sewage"; RL J. Virol. 86(22):12161-12175(2012). XX RN [2] RP 1-2818 RA Ng T.F.F., Marine R., Wang C., Simmonds P., Kapusinsky B., Bodhidatta L., RA Oderinde B.S., Wommack K.E., Delwart E.; RT ; RL Submitted (04-APR-2012) to the INSDC. RL Department of Virology and Department of Laboratory Medicine, Blood Systems RL Research Institute and University of California San Francisco, 270 Masonic RL Ave, San Francisco, CA 94117, USA XX RN [3] RC Sequence update by submitter RP 1-2818 RA Ng T.F.F., Marine R., Wang C., Simmonds P., Kapusinsky B., Bodhidatta L., RA Oderinde B.S., Wommack K.E., Delwart E.; RT ; RL Submitted (13-SEP-2012) to the INSDC. RL Department of Virology and Department of Laboratory Medicine, Blood Systems RL Research Institute and University of California San Francisco, 270 Masonic RL Ave, San Francisco, CA 94117, USA XX DR MD5; b24e6533e18c9900adcefb7b87e22381. XX CC On Sep 13, 2012 this sequence version replaced gi:403044757. CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2818 FT /organism="Nepavirus" FT /isolate="NepaV" FT /mol_type="genomic DNA" FT /country="Nepal" FT /isolation_source="sewage" FT /collection_date="14-Aug-2009" FT /db_xref="taxon:1224510" FT stem_loop join(2796..2818,1..12) FT CDS 46..327 FT /codon_start=1 FT /product="hypothetical protein" FT /db_xref="GOA:J9T6I9" FT /db_xref="UniProtKB/TrEMBL:J9T6I9" FT /protein_id="AFR61150.1" FT /translation="MSVPTVLWLVGLVLVLLDWVLTNLIVLVLSLALEVLLYGVLLLVF FT LLLPREHLLVVLLVLLGVMPYAKVFVRWLVAFLLSGRRLRLPTLSAAL" FT CDS 66..1535 FT /codon_start=1 FT /product="capsid" FT /note="Cap" FT /db_xref="UniProtKB/TrEMBL:J7LKW0" FT /protein_id="AFR11833.2" FT /translation="MARWSRPSVVGLGAYKPNRSGVVTGLRSTALRRTAAGVPITPPRT FT PSGSAAGAVGRYALRQGVRALAGGIPVVGQALAAADFVRGAVSAARRARASRGPTGRKR FT GVAVMYSGRYAGPFKRGKRPRKDPYRANGFVHTTEVHGVVKDPDCVYVGHSVFSGEQML FT DNICQGLLRKLFRKAGIIVKRIDEPIPGYEANTSDCWKISFIRKNQADGAIDTQTYTFP FT NGVNKSIQEVVGDTGNGVAAQFPNYRILMKQYAGGSWDNVGVNTFVPWKLILYQQEGNA FT GIFWQVRAQLDLNDEIVHIFARSDLKIQNRSASATGSEDAQNVSNNPLIGKKYSFKAGS FT PRVRGDYSFPIGSVQEPEGLILSRASAMTGDGGLKEPPHPSAFENCSRSNKIMMQPGTI FT RSDKLYYRVSGRLMKVLLQLNLREGVKDVAGHSKQIRLLGKSTLIALEDMINVNAANDI FT VLAYEINREFGCYFTTRSYNASSGSLYNFES" FT CDS complement(1585..2430) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7LJF3" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="UniProtKB/TrEMBL:J7LJF3" FT /protein_id="AFR11834.1" FT /translation="MTFRLQGRHIAITYSRCDYALDDILAFLKNKHSGSRTVQHVIVCS FT ETHQDGSFHRHAYVRYSGKVNITNPEYFKFRHAQCNIQPCRNVAAWNNYVRKDGDFVEW FT EEDATSSNGLYENAQNMGEADFFQWALRSKIQFGYAQRAWDTQKKAAKLITFDEDNNPF FT LDLNLPLTQELAGWHLSTNLTNVLVGPTGCGKTVYCFRNLLKPMLLISHIDDLKHFDPN FT LHRSILFDDMKFDQWPIQAQIHLCDRGLPRSIHRRYGTTLIPAGIQIAITCNENSFCLP FT " XX SQ Sequence 2818 BP; 712 A; 543 C; 713 G; 850 T; 0 other; gcgaaggccg ctccgagact ggaacggcta tatatatagc cgtggatgtc ggtgcctact 60 gtcttatggc tcgttggtct cgtcctagtg ttgttggatt gggtgcttac aaacctaatc 120 gttctggtgt tgtcactggc cttagaagta ctgctttacg gcgtactgct gctggtgttc 180 ctattactcc cccgcgaaca ccttctggta gtgctgctgg tgctgttggg cgttatgcct 240 tacgccaagg tgttcgtgcg ttggctggtg gcattcctgt tgtcgggcag gcgcttgcgg 300 ctgccgactt tgtccgcggc gctgtaagtg ccgcgagacg tgcccgtgcg tcacgtgggc 360 ctactggcag aaagcgtggt gttgctgtta tgtatagcgg tcgttatgct ggccccttta 420 agcgcggtaa gagacctaga aaggatccat accgcgctaa tggatttgtg catacaacgg 480 aagttcatgg cgttgttaaa gatcctgact gtgtgtatgt tggacatagc gtgttttctg 540 gcgagcaaat gttagataac atttgccaag ggcttttgcg caagttattt cgcaaagccg 600 gtattattgt aaagcgtatt gatgaaccta ttcctggata cgaggctaat acaagtgatt 660 gttggaaaat cagctttatt cgtaagaatc aagctgatgg tgctattgat acccagacct 720 atacttttcc aaacggtgtt aacaaaagta ttcaggaagt tgttggtgat acaggtaatg 780 gggttgcagc gcaattcccc aattaccgta ttttaatgaa acaatatgcc ggtggttctt 840 gggataacgt tggcgtaaat acttttgttc cttggaagtt gattttatat caacaagaag 900 gaaacgctgg aatattttgg caagttcgtg cacagttgga tcttaatgat gagattgtac 960 atatatttgc ccgttctgat ttgaaaattc agaatcgaag tgccagtgca actggcagtg 1020 aagatgctca gaatgttagt aataatcctt tgattggcaa aaagtactcg tttaaagctg 1080 gatcaccacg tgtgcgtggt gattatagct ttccaattgg ttctgtacag gaacctgaag 1140 gattgatttt aagtcgagcg tcagcgatga ctggtgatgg tggattgaaa gaaccccctc 1200 atccttctgc atttgaaaat tgcagccgtt cgaataagat catgatgcag ccgggcacta 1260 ttcgtagtga taagctgtat tatcgtgttt ctggaaggtt aatgaaagtg ttgttgcaac 1320 tcaatttgcg tgagggtgtt aaagatgttg ctggtcacag caagcaaata cgattgcttg 1380 gcaagagtac tttgattgcg ctggaggaca tgattaatgt aaatgcagcc aatgatattg 1440 tgctagcata tgaaattaat cgtgagtttg gctgttattt tacaactcgt agctataatg 1500 catcatctgg aagtctttat aattttgaaa gttaatttga atacttagtt tattaataaa 1560 cgattgcatc ttctttgaat tgcttcatgg taagcaaaag gaattttcat tgcatgttat 1620 cgctatctga atccctgcag gaatcagcgt cgtgccatac cgccggtgaa ttgaccgagg 1680 taagccacga tcgcataaat ggatctgcgc ttgtatcggc cactggtcga acttcatgtc 1740 gtcgaacagg atcgacctgt ggagattcgg gtcgaaatgt ttcaggtcgt cgatgtgaga 1800 tatcagaagc atcggcttca ggagattcct aaagcaataa actgtcttac cgcaacccgt 1860 tggacctacc aatacgttcg tcaagttggt cgaaaggtgc cacccagcaa gctcttgcgt 1920 cagtggcaga ttgagatcaa ggaacgggtt gttgtcttca tcgaacgtaa ttaacttggc 1980 agctttcttc tgagtgtccc atgcccgttg cgcataaccg aactgtattt tggaccgtaa 2040 agcccattgg aaaaagtcag cttcgcccat gttctgcgcg ttttcataca atccgttgga 2100 tgaagtagcg tcctcttccc actccacgaa gtcgccgtct ttacgtacgt agttattcca 2160 cgcggcgaca ttacggcaag gctggatgtt gcactgcgcg tgacggaatt taaagtactc 2220 agggttggta atattgacct tccctgagta acgcacgtag gcatgcctat gaaaggatcc 2280 gtcttgatgg gtctcagaac agacaatgac atgttggacc gttcgagatc cggaatgctt 2340 gttcttgagg aaagcaagaa tatcatcgag ggcataatcg caacggctgt aggtaatggc 2400 tatatggcgt ccctgtaatc gaaaggtcat aagagatact ctggagtcaa atataatatg 2460 gatttttatt tttacaacta acttgtggta cttttatttc ataatagata tatcctcgac 2520 gaaatcaacc agggttagaa ccagggttag tagactgagg ggaaccggca ggtgtaccga 2580 tgtcgtttgt tagggggtta ggattagggt ctcggctagg gttaaaacac agtaggcacg 2640 acgctagaat aaagaatgcg agtattatgg caccgagggc tatgcctaag gggttcataa 2700 tttttgttgc tctactgacc gtgaactttt tttctattat atagtatatg gagcattatt 2760 tttatatata agtgaacttg ttcacttatt tttatagcgg ccttcctatt ataacatt 2818 //