ID JQ898332; SV 2; circular; genomic DNA; STD; VRL; 2383 BP. XX AC JQ898332; XX DT 09-SEP-2012 (Rel. 114, Created) DT 24-OCT-2012 (Rel. 114, Last updated, Version 3) XX DE Niminivirus isolate NimiV, complete genome. XX KW . XX OS Niminivirus OC Viruses; Geminiviridae; unclassified Geminiviridae. XX RN [1] RP 1-2383 RX PUBMED; 22933275. RA Ng T.F., Marine R., Wang C., Simmonds P., Kapusinszky B., Bodhidatta L., RA Oderinde B.S., Wommack K.E., Delwart E.; RT "High variety of known and new RNA and DNA viruses of diverse origins in RT untreated sewage"; RL J. Virol. 86(22):12161-12175(2012). XX RN [2] RP 1-2383 RA Ng T.F.F., Marine R., Wang C., Simmonds P., Kapusinsky B., Bodhidatta L., RA Oderinde B.S., Wommack K.E., Delwart E.; RT ; RL Submitted (04-APR-2012) to the INSDC. RL Department of Virology and Department of Laboratory Medicine, Blood Systems RL Research Institute and University of California San Francisco, 270 Masonic RL Ave, San Francisco, CA 94117, USA XX RN [3] RC Sequence update by submitter RP 1-2383 RA Ng T.F.F., Marine R., Wang C., Simmonds P., Kapusinsky B., Bodhidatta L., RA Oderinde B.S., Wommack K.E., Delwart E.; RT ; RL Submitted (13-SEP-2012) to the INSDC. RL Department of Virology and Department of Laboratory Medicine, Blood Systems RL Research Institute and University of California San Francisco, 270 Masonic RL Ave, San Francisco, CA 94117, USA XX DR MD5; 3c3407806f256c9cbe2d4edd420e4cd4. XX CC On Sep 13, 2012 this sequence version replaced gi:403044752. CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2383 FT /organism="Niminivirus" FT /isolate="NimiV" FT /mol_type="genomic DNA" FT /country="Nigeria" FT /isolation_source="sewage" FT /collection_date="15-Apr-2008" FT /db_xref="taxon:1229325" FT stem_loop join(2365..2383,1..13) FT CDS 141..1169 FT /codon_start=1 FT /product="capsid" FT /note="Cap" FT /db_xref="UniProtKB/TrEMBL:J7LG37" FT /protein_id="AFR11830.2" FT /translation="MKRPSFFSVAKAGFKRYGPTIARKVGKHALKYGYRKLTQSGKSTR FT ETAPLTYDNDFKTDYRYKRMPKRRRRRWKRFTKKVNAVINRSQGLKKVLYSDIVRLSSN FT VSQCAYHSAMLYTPDARVTDLSADLGMIFRDILGAVAYNDIQNILVQGDVDKKIRFESA FT NMDVSWRNVGANPVIIDLYYVRCRKTFGLTGADADNNTQGIFSLGFVKQGVIVDEEDGN FT TVGSNRQFALTVGSTPFQSSLFCQTYRILSKKRITIAPGNTVSMTLKDSRNKVVNAMDT FT RARICMRNLTHGYLFQLYGVPGLNGDVPVTALASDVVFSVQKRYGFYLPVSGKDQTSNI FT PL" FT CDS 166..435 FT /codon_start=1 FT /product="putative movement protein" FT /db_xref="UniProtKB/TrEMBL:J7LJE9" FT /protein_id="AFR11829.2" FT /translation="MQKQALNAMDRQLPARSESTHSSTDTESSLSLESLPVRLLPSHTI FT MILKPTIGTNACPSAADGDGNGLPRKSTRSSTEARGLRKFCTLI" FT CDS 1114..1350 FT /codon_start=1 FT /product="putative replication initiator protein" FT /db_xref="GOA:J7LDF6" FT /db_xref="UniProtKB/TrEMBL:J7LDF6" FT /protein_id="AFR11832.2" FT /translation="MAFIYLYQARIKHPIFLSNIFTPSCFLLSSFFFFSFRGHVLARSA FT RDRYFSLFFSFSSRNRVPSILHRFLVLRPDVKL" FT CDS complement(1377..2315) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7LLL3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:J7LLL3" FT /protein_id="AFR11831.2" FT /translation="MQYPNMPFRIQGRHLFLTYPQCHLTHEAIYNHLIDLPVGNEKPTK FT IVVAKELHEDGHPHFHAYLCFDKRRDLRYQRHFDISGYHPNIQVCRSVKDVLKYVTKDG FT EYMSNFTVIKPTIHQLIERADDETSFALSALEHYDKNFANCFNSWMSLYKMLKSKKKVC FT DPVSDWTLMKMDDLHLLARILSITAHQKDGSRTKSIWLFGPSKTGKSTLARSIGKHAYM FT QNTWCVDELSDDAQYLVLDDIAWDTWKWQYKSVLGCQKDVIFTGKYARPRRFNFNMPCI FT VCSNEKPVFSVDELNWLDVNIDFFEINNKLY" XX SQ Sequence 2383 BP; 677 A; 510 C; 479 G; 717 T; 0 other; acttctctgc cgaattgtga ggtctagata tccatctacc caaaaaaggt atctaatata 60 cccctcaacc caaaagagga aagtgagcca gtcggtgagg attataaaaa gggcacgtgc 120 cctcgtgaca tcacgcaaac atgaaacgtc caagtttttt ctcggttgca aaagcaggct 180 ttaaacgcta tggaccgaca attgcccgca aggtcggaaa gcacgcactc aagtacggat 240 accgaaagct cactcagtct ggaaagtcta cccgtgagac tgctcccctc acatacgata 300 atgattttaa aaccgactat cggtacaaac gcatgcccaa gcgccgcaga cggcgatgga 360 aacggtttac caagaaagtc aacgcggtca tcaaccgaag ccaggggctt aagaaagttc 420 tgtactctga tatagttagg cttagctcca atgtgagtca gtgtgcgtac cactcggcaa 480 tgctgtatac cccggacgca cgtgttactg atttgtcagc tgacttagga atgatattcc 540 gtgatatact cggtgcggta gcgtataatg atattcagaa tatacttgtt cagggtgacg 600 ttgataaaaa gattaggttt gaaagtgcga atatggacgt gtcctggcgt aatgttggtg 660 caaacccagt aattatagat ttatattatg tgcgttgtcg aaagacattt ggccttacag 720 gtgcagatgc ggacaacaac actcagggta tcttttcgtt aggtttcgtg aagcagggcg 780 taattgtgga tgaagaagac ggaaatacgg taggtagtaa tcgtcaattt gctcttactg 840 tcggatctac ccccttccag agttctcttt tctgtcagac gtatcgtatt ctctccaaaa 900 agcgaattac catcgctccc ggtaatacag tgtccatgac actcaaggat tcgcgtaata 960 aggtagtcaa tgcaatggat acgcgtgcta gaatatgcat gcgcaactta actcatggtt 1020 acttgtttca actatacggt gttcccggat tgaatggcga cgttcctgtt accgctttag 1080 cttcagacgt agtctttagt gtacagaaac gttatggctt ttatttacct gtatcaggca 1140 aggatcaaac atccaatatt cctctctaat atatttaccc cttcttgttt tttgttatct 1200 tcttttttct ttttctcctt tagaggtcac gtgctcgcgc gttcagcgcg tgaccgatac 1260 ttttctttat ttttttcttt ttcttcgagg aacagggttc cgagtatact acacagattt 1320 ttagtcttaa ggcctgacgt gaaactataa tgcacttgct tacacatact gcagggctaa 1380 tacaatttat tatttatttc aaaaaagtct atatttacat ctaaccagtt taattcatct 1440 acactaaata cgggtttttc atttgaacat actatacacg gcatattaaa attaaagcgt 1500 ctaggtcttg catatttacc agtaaaaata acatctttct gacaccccag cacggatttg 1560 tactgccatt tccacgtgtc ccaagctata tcgtctaaca ctaaatactg agcatcgtca 1620 ctgagttcgt ctacacacca cgtgttttgc atataggcgt gtttaccaat tgatcgagcc 1680 aaagtcgatt ttcccgtttt agacgggcca aataaccaga tactcttcgt tcttgatccg 1740 tctttttgat gagctgtaat tgaaaggatt cgagccaata gatgtaagtc atccatcttc 1800 attaaagtcc aatcagatac agggtcacat actttttttt ttgattttaa cattttgtat 1860 aacgacatcc aagaattaaa acagttagca aagtttttat cataatgttc caacgcggaa 1920 agagcgaatg aggtttcatc atcagcacgt tctattagtt gatgaatggt gggcttgatc 1980 accgtaaaat tagacatata ttcaccatct ttagttacgt acttcagaac atccttcaca 2040 gatctgcaaa cctgaatgtt aggatggtaa ccactaatat caaagtggcg ctgataacgc 2100 aagtctctcc ttttgtcgaa acataaataa gcatgaaaat gcggatggcc atcctcgtgt 2160 aactctttcg caacaacaat tttagtgggc ttttcatttc caacgggcaa atcaatcaag 2220 tggttataaa tagcttcgtg tgtcaaatga cactgcggat aggttaagaa aaggtggcgt 2280 ccttgtatcc tgaaaggcat gttaggatat tgcaatggtt tttggatcta acccaacgcg 2340 ggccagcccc cttttatacc cccatcggca gagaattaat att 2383 //