ID JQ898331; SV 2; circular; genomic DNA; STD; VRL; 2806 BP. XX AC JQ898331; XX DT 09-SEP-2012 (Rel. 114, Created) DT 24-OCT-2012 (Rel. 114, Last updated, Version 3) XX DE Baminivirus isolate BamiV, complete genome. XX KW . XX OS Baminivirus OC Viruses; Geminiviridae; unclassified Geminiviridae. XX RN [1] RP 1-2806 RX PUBMED; 22933275. RA Ng T.F., Marine R., Wang C., Simmonds P., Kapusinszky B., Bodhidatta L., RA Oderinde B.S., Wommack K.E., Delwart E.; RT "High variety of known and new RNA and DNA viruses of diverse origins in RT untreated sewage"; RL J. Virol. 86(22):12161-12175(2012). XX RN [2] RP 1-2806 RA Ng T.F.F., Marine R., Wang C., Simmonds P., Kapusinsky B., Bodhidatta L., RA Oderinde B.S., Wommack K.E., Delwart E.; RT ; RL Submitted (04-APR-2012) to the INSDC. RL Department of Virology and Department of Laboratory Medicine, Blood Systems RL Research Institute and University of California San Francisco, 270 Masonic RL Ave, San Francisco, CA 94117, USA XX RN [3] RC Sequence update by submitter RP 1-2806 RA Ng T.F.F., Marine R., Wang C., Simmonds P., Kapusinsky B., Bodhidatta L., RA Oderinde B.S., Wommack K.E., Delwart E.; RT ; RL Submitted (13-SEP-2012) to the INSDC. RL Department of Virology and Department of Laboratory Medicine, Blood Systems RL Research Institute and University of California San Francisco, 270 Masonic RL Ave, San Francisco, CA 94117, USA XX DR MD5; b8668d8ed2a52065a00a75b7f268ac33. DR EuropePMC; PMC3486453; 22933275. XX CC On Sep 13, 2012 this sequence version replaced gi:403044749. CC ##Assembly-Data-START## CC Sequencing Technology :: Sanger dideoxy sequencing CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..2806 FT /organism="Baminivirus" FT /isolate="BamiV" FT /mol_type="genomic DNA" FT /country="Thailand" FT /isolation_source="sewage" FT /collection_date="18-Jun-2009" FT /db_xref="taxon:1229324" FT stem_loop join(2787..2806,1..13) FT CDS 11..289 FT /codon_start=1 FT /product="putative movement protein" FT /db_xref="UniProtKB/TrEMBL:J9TCS3" FT /protein_id="AFR61149.1" FT /translation="MRDLRDFYVPRLRMNEFIRRPIGDGLKESPDLCVLPGYLGRTNQV FT RLSYPGPTFTRSVTRSCPARSRDPHVIFLGWFGGAGGFTPQHFLSIA" FT CDS 373..1848 FT /codon_start=1 FT /product="capsid" FT /note="Cap" FT /db_xref="GOA:J7LDF2" FT /db_xref="UniProtKB/TrEMBL:J7LDF2" FT /protein_id="AFR11827.2" FT /translation="MRYDLEAQRHYRNKWHGRAFSRIRHPIGYRALAGLGGAAVAGLGA FT LYPRAKRVIGRLRGVKVAPNEEWLLGEKEFPQVRAHIKGSTALAKRPLGTLTAYYPVTK FT HYKTSSSKSMSNGGDTQMADSNATTEAALGWGQHDAKTLYTRRRRTRKNWRKSYRRART FT KGSLSYYQKKYIRNKIRARGGVTLPTSLSIINKHTLYRHDGDGGSMLGVDTLGCFFHSI FT GSTLETASEKHIDIHDIFKQLYAQADLTDATGTSWQTGAATANMRLHIKSARANFTFAN FT NSTQTMLVKMWTFSCKKSITDTDMTAGGLMSLADVVGASPSTLGRYFYDTQFHEQDRGA FT DDDHIDMDKTLVHTFNPNLSVIAKQYLTLDKIQRWEMPAGSVVQFEYNSKIGISVNYHT FT CLKYFAMKGVSQFFVFQVHSAPYVDGDHAIQPSRGLAADTGVVMTLKKEYRWSPVWNSI FT DDLSVNQKHKFTPSATVNPAGKPQDATTLEYHL" FT CDS complement(1845..2789) FT /codon_start=1 FT /product="Rep" FT /db_xref="GOA:J7LKV6" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:J7LKV6" FT /protein_id="AFR11828.1" FT /translation="MAQPRFRLQGKNILLTYPQCNLEVKHVCDELALRLPPGRCSGVLE FT RHQDGNPHLHILWELRRRLDTQNPRFFDVDTFHPNVVVVRSVRGARDYIAKTGAEVYTN FT EPGEPECESWGEILEQATSREGFLDLVRKHKPRDFILNMERLEYAANILFAEPEQSFVS FT MYTTFAPPSACHDWWLQYGARPRLEGRLQSLYVEGASRIGKTEWARSLGPHVYFNNMYN FT LDDLKSALRYAEFAVFDDIPFDRLPAWKSFFGCQHTFTLTDRYRKKFTISDWSKPSIFL FT VNPDMTYDAWNKGREWEYIKQNAVIVKTDSRFY" XX SQ Sequence 2806 BP; 637 A; 623 C; 758 G; 788 T; 0 other; acctgcgatt ttgagggatt tgagggactt ttatgttcct cgactgcgga tgaatgaatt 60 tatccgcaga ccaatcggag atggtttaaa agagtcacca gacctttgtg tattgccggg 120 gtacctcggg cgcaccaatc aggttcgcct gtcatacccc ggcccgactt ttacccggag 180 tgtaacgagg agttgccccg caaggtcacg tgaccctcac gtgatctttt taggttggtt 240 tgggggggcg ggggggttta ccccccagca ttttctttct attgcgtaag gcccccttgg 300 gggccgctca ttagggactt ttaggttggt ttgcgcatat aaaagggatg tttaggtcct 360 tttaggtctc gtatgcgtta cgatttagag gcgcaacgcc attatcggaa caaatggcac 420 ggcagggcgt tcagtcgcat aaggcatcca atcgggtatc gtgctttagc tggtttaggt 480 ggcgcagcgg ttgctggttt aggggctctg tatcccagag cgaagcgcgt catcggtcgt 540 cttcggggtg ttaaggttgc accaaatgag gagtggcttc ttggtgaaaa agagtttcct 600 caggttcgcg cgcatataaa agggagtact gcccttgcta agcgtccact tggtactttg 660 actgcgtatt atcctgtcac caagcattac aagacatcaa gttcgaaatc tatgagtaat 720 ggtggcgata cgcagatggc ggacagcaac gcgacgaccg aggcggcgtt gggttggggc 780 cagcacgatg cgaagacgtt atatacgcgc cggcgtagga cgcgcaagaa ttggcgcaag 840 agctatcggc gcgcgcgcac gaagggttcg ctttcgtact atcagaagaa gtacataagg 900 aataagatta gggcacgtgg aggcgttacc ttgccaacgt ccctgtctat tatcaacaag 960 catactcttt ataggcatga tggagatggt ggatctatgc ttggtgttga cactcttggg 1020 tgtttcttcc attcgattgg atctacactt gagactgctt ctgagaagca tattgatatc 1080 catgatatct ttaagcagtt gtatgctcag gcggatctta ctgatgcgac tggtacttcg 1140 tggcagactg gagccgctac tgccaatatg cggcttcata ttaagtctgc tagggccaat 1200 ttcacttttg ccaataattc gacccagact atgttggtta agatgtggac tttttcgtgt 1260 aagaagtcta ttactgatac agatatgact gctggtggtt tgatgtcatt ggctgatgta 1320 gttggcgctt ctcctagtac tttgggtcgg tacttttatg atactcagtt tcatgaacag 1380 gatagaggcg ctgatgatga tcatattgat atggacaaga ctttggttca tactttcaac 1440 cctaacctta gcgttattgc taagcagtat ctcacgctgg ataaaattca gcgttgggag 1500 atgcctgccg gttctgttgt tcagttcgag tataactcca agatcggaat ttcggtgaat 1560 tatcatacat gcctcaagta ctttgctatg aagggtgtgt cccagttctt tgtgttccaa 1620 gttcattcgg caccttatgt ggatggagat catgctattc agccatcaag aggacttgcg 1680 gcggatactg gtgttgttat gacgcttaag aaggagtatc gttggtcgcc tgtctggaat 1740 agtatcgatg atctttcggt caatcagaag cataagttta cgccttcggc aactgttaat 1800 ccggctggta agccacagga tgctactact ttggagtatc atctttaata aaaacggcta 1860 tctgtcttta ctatcacagc attttgctta atgtattccc actctcttcc cttattccat 1920 gcatcgtacg tcatgtcggg gttgactaaa aagattgaag gcttcgacca atcagaaatg 1980 gtgaactttt tgcggtatcg atcggtcaag gtgaaggtgt gttgacaccc aaagaaagac 2040 ttccacgctg gtaaacgatc aaacggaata tcatcaaaca ccgcgaattc ggcgtatcga 2100 agagcggact tcagatcgtc caagttgtac atgttgttga agtacacgtg cggccccaag 2160 gatctggccc attcggtctt gcctatacgt gaagctcctt cgacatacag ggactgtaga 2220 cgaccctcga ggcgaggtct tgctccgtac tgtagccacc agtcatggca ggcgctcggc 2280 ggggcgaagg tggtgtacat ggacacaaaa ctttgttctg gctcagcgaa taggatgttc 2340 gcggcatatt cgagtcgttc catattgagg atgaagtctc gtggcttgtg tttgcgcacg 2400 aggtccagga atccttctct gctcgtagcc tgttcaagaa tttcgcccca gctctcgcac 2460 tcgggctctc cgggctcatt ggtgtatact tctgctccag ttttggcgat gtagtctctc 2520 gctcctcgga ctgaccgcac gaccacgaca ttcggatgga aagtatcgac gtcgaagaat 2580 cttgggttct gagtgtcaag tctcctgcga agctcccata ggatgtggag atggggattg 2640 ccatcttggt gtcgttccag gacaccacta caccggccgg gcggtagacg caatgcgagt 2700 tcgtcgcaga catgtttgac ttcgaggttg cactgaggat aggtcaagag tatgttcttg 2760 ccttggagcc ggaatcgtgg ctgcgccaaa atcgcagatt aatatt 2806 //