Dbfetch
ID JQ895560; SV 1; linear; genomic RNA; STD; VRL; 1494 BP. XX AC JQ895560; XX DT 26-JUN-2012 (Rel. 113, Created) DT 26-JUN-2012 (Rel. 113, Last updated, Version 1) XX DE Tobacco mosaic virus isolate TMV-SoyIn movement protein and capsid protein DE genes, complete cds. XX KW . XX OS Tobacco mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-1494 RA Kumar A., Shilpi S., Maheshwari Y., Lal S.K., Mandal B.; RT "Molecular characterization of a new strain of soybean infecting Tobacco RT mosaic virus in India based on host reactions and 3' end genome sequence"; RL Unpublished. XX RN [2] RP 1-1494 RA Kumar A., Shilpi S., Maheshwari Y., Lal S.K., Mandal B.; RT ; RL Submitted (03-APR-2012) to the INSDC. RL Plant Virology Unit, Division of Plant Pathology, Indian Agricultural RL Research Institute, Pusa Campus, New Delhi, Delhi 110012, India XX DR MD5; d0b89778c814918f61a2f6eb6ac1562a. XX FH Key Location/Qualifiers FH FT source 1..1494 FT /organism="Tobacco mosaic virus" FT /host="Glycine max" FT /lab_host="Nicotiana benthamiana" FT /isolate="TMV-SoyIn" FT /mol_type="genomic RNA" FT /country="India" FT /collection_date="Jan-2011" FT /db_xref="taxon:12242" FT CDS 1..807 FT /codon_start=1 FT /product="movement protein" FT /db_xref="GOA:Q9QPN6" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q9QPN6" FT /protein_id="AFM73898.1" FT /translation="MALVVKGKVNINEFIDLTKMEKILPSMFTPVKSVMCSKVDKIMVH FT ENESLSEVNLLKGVKLIDSGYVCLAGLVVTGEWNLPDNCRGGVSVCLVDKRMERADEAT FT LGSYYTAAAKKRFQFKVVPNYAITTQDAMKNVWQVLVNIRNVKMSAGFCPLSLEFVSVC FT IVYRNNIKLGLREKITNVRDGGPMELTEEVVDEFMEDVPMSIRLAKFRSRTGKKSDVRK FT GKNSSSDRSVPNKNYRNVKDFGGMSLKKNNLIDDDSEATVAESDSF" FT CDS 810..1289 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:Q77LT8" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="PDB:2OM3" FT /db_xref="PDB:2XEA" FT /db_xref="UniProtKB/TrEMBL:Q77LT8" FT /protein_id="AFM73899.1" FT /translation="MSYSITTPSQFVFLSSAWADPIELINLCTNALGNQFQTQQARTVV FT QRQFSEVWKPSPQVTVRFPDSDFKVYRYNAVLDPLVTALLGAFDTRNRIIEVENQANPT FT TAETLDATRRVDDATVAIRSAINNLIVELIRGTGSYNRSSFESSSGLVWTSGPAT" FT 3'UTR 1290..>1494 XX SQ Sequence 1494 BP; 448 A; 269 C; 373 G; 404 T; 0 other; atggctctag ttgttaaagg aaaagtgaat atcaatgagt ttatcgacct gacaaaaatg 60 gagaagatct taccgtcgat gtttacccct gtaaagagtg ttatgtgttc caaagttgat 120 aaaataatgg ttcatgagaa tgagtcattg tcagaggtga accttcttaa aggagttaag 180 cttattgata gtggatacgt ctgtttagcc ggtttggtcg tcacgggcga atggaacttg 240 cctgacaatt gcagaggagg tgtgagcgtg tgtctggtgg acaaaaggat ggaaagagcc 300 gacgaggcca ctctcggatc ttactacaca gcagctgcaa agaaaagatt tcagttcaag 360 gtcgttccca attatgctat aaccacccag gacgcgatga aaaacgtctg gcaagtttta 420 gttaatatta gaaatgtgaa gatgtcagcg ggtttctgtc cgctttctct ggagtttgtg 480 tcggtgtgta ttgtttatag aaataatata aaattaggtt tgagagagaa gattacaaac 540 gtgagagacg gagggcccat ggaacttaca gaagaagtcg ttgatgagtt catggaagat 600 gtccctatgt caatcaggct tgcaaagttt cgatctcgga ccggaaaaaa gagtgatgtc 660 cgtaaaggga aaaatagtag tagtgatcgg tcagtgccga acaagaacta tagaaatgtt 720 aaggattttg gaggaatgag tttaaaaaag aataatttaa tcgatgatga ttcggaggct 780 actgtcgccg aatcggattc gttttaaata tgtcttacag tatcactact ccatctcagt 840 tcgtgttctt gtcatcagcg tgggccgacc caatagagtt aattaattta tgtactaatg 900 ccttaggaaa tcagtttcaa acacaacaag ctcgaactgt cgttcaaaga caattcagtg 960 aggtgtggaa accttcacca caagtaactg ttaggttccc tgacagtgac tttaaggtgt 1020 acaggtacaa tgcggtatta gacccgctag tcacagcact gttaggtgca ttcgacacta 1080 gaaatagaat aatagaagtt gaaaatcagg cgaaccccac gactgccgaa acgttagatg 1140 ctactcgtag agtagacgac gcaacggtgg ccataaggag cgcgataaat aatttaatag 1200 tagaattgat cagaggaacc ggatcttata atcggagctc tttcgagagc tcttctggtt 1260 tggtttggac ctctggtcct gcaacttgag gtattcaaga tgcataataa ataacggatt 1320 gtgtccgtaa tcacacgtgg tgcgtacgat aacgcatagt gtttttccct ccacttaaat 1380 cgaagggttg tgtcttggat cgcgcgggtc aaatgtatat ggttcatata catccgcagg 1440 cacgtaataa agcgaggggt tcgaatcccc ccgttacccc cggtaggcgg ccca 1494 //