ID JQ862472; SV 1; linear; genomic RNA; STD; VRL; 5698 BP. XX AC JQ862472; XX DT 12-DEC-2012 (Rel. 115, Created) DT 12-DEC-2012 (Rel. 115, Last updated, Version 1) XX DE Turnip yellows virus isolate WA-1, complete genome. XX KW . XX OS Turnip yellows virus OC Viruses; Riboviria; Luteoviridae; Polerovirus. XX RN [1] RC Publication Status: Available-Online prior to print RP 1-5698 RX PUBMED; 23089850. RA Wylie S.J., Li H., Dixon K.W., Richards H., Jones M.G.; RT "Exotic and indigenous viruses infect wild populations and captive RT collections of temperate terrestrial orchids (Diuris species) in RT Australia"; RL Virus Res. 0:0(2012). XX RN [2] RP 1-5698 RA Wylie S.J., Jones M.G.K.; RT ; RL Submitted (29-MAR-2012) to the INSDC. RL Plant Virology, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 2b11c440b394f0b2b6325cc9ba389f17. DR EuropePMC; PMC4422679; 25946037. XX FH Key Location/Qualifiers FH FT source 1..5698 FT /organism="Turnip yellows virus" FT /isolate="WA-1" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="Stephen Wylie" FT /collection_date="2011" FT /db_xref="taxon:131083" FT 5'UTR 1..31 FT CDS 32..781 FT /codon_start=1 FT /product="hypothetical protein" FT /note="P0" FT /db_xref="GOA:K9Y3B3" FT /db_xref="InterPro:IPR006755" FT /db_xref="UniProtKB/TrEMBL:K9Y3B3" FT /protein_id="AFZ39158.1" FT /translation="MQFVAHDNFHTLQIKKVRFLHPQQEAYLLAGLLLNIKQFVQAIQE FT RNNEFNIDIFLRSLLYQLPFHLGSCFHDAPRELIPATEPELCAWFSLQTGYTPTSTSGR FT INLHMPGTKTSRRRIIQRSLASDFSEKLKRFPECLFVSLEFFQRFLSTWTKDAERRIFF FT SCREIPVGSNTLVELANLGELLRVMVVGEQFHNSRLLSRLAVHCYKIYGEDGFISFWRI FT ADLDHLDRFLTPEEILFSSSVYTEMFV" FT CDS join(174..1553,1553..3277) FT /codon_start=1 FT /ribosomal_slippage FT /product="P1-2 fusion protein" FT /db_xref="GOA:K9Y319" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:K9Y319" FT /protein_id="AFZ39160.1" FT /translation="MNSTLIFFFALCFISFLSTSEAASTMLLESSYLPLNQSCVPGFLY FT KRDTLPPPLQGVLTYTCQEPRPLVEESYNDLLRAISQKSSSDFQNACSLALSFSSDFYQ FT HGLKTLKDVSFLAVEKFLWGLTRLWSSLILASFSALWWLVSNFTTPVFCLALLYTVTRF FT MVKMVLFLFGGLPIWIISIAFSLLKKSFSALRSTPKCLYEKAIDGFKSFTIPQSPPKSC FT VIPITHASGNHAGYASCVKLYNGENALMTATHVLRDCPNAVAVSAKGLKTRIPLAEFKI FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITATNLAKCKASIFSLDRDGWVSNYAEIVG FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASAIGNYNLMAPIPSIPGLTSPTYVF FT ETTAPQGRVFAQEDITAIENLYAEAVRKADPMSFKSITGKNWADMVEDEDIFFESKEDL FT PGKRSARHRPRTKRRRQLHPKDKQRRWKRDDGENNLISSGEDKSREHREESDRRDFRES FT DENSKTPPQKSPKETAGEFEGYLSSLYHWEVPTTPCEIPGFRHCGKLPQYYHPKQKEES FT SWGKTLVGNNPALGEKTSGFGWPKFGPEAELKSLRLQASRWLERAQSAKIPSDAERERV FT IQKTVDVYYPCQTNGPTATRGGALTWNNFMIDFKQAVFSLELDAGIGVPYIAYGKPTHR FT GWVEDQKLLPVLARLTFIRLQKMLEVNFEDMGPEELIQSGLCDPIRLFVKGEPHKQAKL FT DEGRYRLIMSVSLVDQLVARVLFQNQNKREIALWRAIPSKPGFGLSTDEQVLDFVKSLA FT RQVGTTTTDVVANWKDYLTPTDCSGFDWSVANWMLEDDMIVRNRLTIDINPATERLRSC FT WLRCVSNSVLCLSDGTLLAQTHPGVQKSGSYNTSSSNSRIRVMAAFHTGAAWAMAMGDD FT ALESNPADLEGYKNLGFKVEVSGQLEFCSHVFRAPDLALPVNENKMIYKLIYGYNPGSG FT NAEVVSNYLAACFSVLNELRHDPASVELLYSWLVDPVLPQKIPGE" FT CDS 174..1994 FT /codon_start=1 FT /product="P1 protein" FT /db_xref="GOA:K9Y4C2" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR018019" FT /db_xref="UniProtKB/TrEMBL:K9Y4C2" FT /protein_id="AFZ39159.1" FT /translation="MNSTLIFFFALCFISFLSTSEAASTMLLESSYLPLNQSCVPGFLY FT KRDTLPPPLQGVLTYTCQEPRPLVEESYNDLLRAISQKSSSDFQNACSLALSFSSDFYQ FT HGLKTLKDVSFLAVEKFLWGLTRLWSSLILASFSALWWLVSNFTTPVFCLALLYTVTRF FT MVKMVLFLFGGLPIWIISIAFSLLKKSFSALRSTPKCLYEKAIDGFKSFTIPQSPPKSC FT VIPITHASGNHAGYASCVKLYNGENALMTATHVLRDCPNAVAVSAKGLKTRIPLAEFKI FT IAKSDKGDVTLLRGPPNWEGLLGCKAANVITATNLAKCKASIFSLDRDGWVSNYAEIVG FT SEGTDVMVLSHTEGGHSGSPYFNGKTILGVHSGASAIGNYNLMAPIPSIPGLTSPTYVF FT ETTAPQGRVFAQEDITAIENLYAEAVRKADPMSFKSITGKNWADMVEDEDIFFESKEDL FT PGNGVRGTVRGPNGEGSFIPKTNNVDGKEMMEKIISSLVGKINLENIEKKVIEEISAKA FT MKTPKPRRRRAPKKQPESSKDTSPRSTTGKYQPPHVRSPASATAASCPNTTTPSKKKNP FT AGGKPSSGTIPRWVRKQAASAGPSSAPKQN" FT misc_feature 3278..3480 FT /note="intergenic NCR" FT CDS 3481..5268 FT /codon_start=1 FT /transl_except=(pos:4087..4089,aa:OTHER) FT /product="truncated P3/P5 read-through protein" FT /db_xref="GOA:K9Y3B7" FT /db_xref="InterPro:IPR001517" FT /db_xref="InterPro:IPR002929" FT /db_xref="UniProtKB/TrEMBL:K9Y3B7" FT /protein_id="AFZ39163.1" FT /translation="MNTVVGRRTINGRRRPRRQTRRAQRSQPVVVVQTSRTTQRRPRRR FT RRGNNRTGGAVSTRGASSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHE FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGRRTFTASYING FT TEWHDVAEDQFKILYKGNGSSSIAGSFRITIKCQFHNPKXVDEEPGPSPGPSPSPQPTP FT QKKYRFIVYTGVPVTRIMAQSTDDAISLYDMPTQRFRYIEDENMNWTNLDSRWYSQNNL FT KAIPMIIIPVPQGEWTVEISMEGYQPTSSTTDPNKDKQDGLIAYNDDLNEGWNVGIYNN FT VEITNNKADNTLKYGHPDMELNSCHFNQGQCLERDGDLTCHVTTTGDNASIFIVGPAVQ FT KQSKYNYAVSYGAWTDRMMEIGMIAVALDEQGSSGSAKKVKRPKRAGHSMAVSTWETIN FT SPEKENSEQLETSQRQDFKTPLMVVGSSDKLDVEEGGLPLPAEEDIPDFIGNDPWFNIS FT TKEPQEEEAMSSRSGLRPQLKPPGLPKPQPVRTIRSFDPTPDLVEAWRPNVNPGPDILK FT KMWQLPLSLPEVLLKTAVL" FT CDS 3481..4089 FT /codon_start=1 FT /product="coat protein" FT /note="CP" FT /db_xref="GOA:K9Y441" FT /db_xref="InterPro:IPR001517" FT /db_xref="UniProtKB/TrEMBL:K9Y441" FT /protein_id="AFZ39161.1" FT /translation="MNTVVGRRTINGRRRPRRQTRRAQRSQPVVVVQTSRTTQRRPRRR FT RRGNNRTGGAVSTRGASSSETFVFSKDNLAGSSSGAITFGPSLSDCPAFSNGILKAYHE FT YKISMVILEFVSEASSQNSGSIAYELDPHCKLNSLSSTINKFGITKPGRRTFTASYING FT TEWHDVAEDQFKILYKGNGSSSIAGSFRITIKCQFHNPK" FT CDS 3512..4039 FT /codon_start=1 FT /product="movement protein" FT /note="MP" FT /db_xref="InterPro:IPR001964" FT /db_xref="UniProtKB/TrEMBL:K9Y597" FT /protein_id="AFZ39162.1" FT /translation="MEEDDHGGKHDALSALSQWLWSKPLGQHNADLDDDEEVITGQEEL FT FLPEEQAQARHLFSQKTISREVPAEQSRSGRVYQTARHSLMEYSRPTMSIKSRWSFWSS FT SPKPLPKIPVPSLTSWTHTVNSTPFPQLSTNSGSQSPGGGRLQRLTSTGRNGTTLPRTN FT SRSSTKAMVLHR" FT 3'UTR 5269..5698 XX SQ Sequence 5698 BP; 1639 A; 1451 C; 1333 G; 1275 T; 0 other; acaaaagaaa ccaggaggga atcctaagtt gatgcaattt gttgctcacg acaactttca 60 tactttacaa atcaagaaag tccgattcct ccacccgcaa caagaagcat atcttctagc 120 aggtttattg cttaacataa aacaatttgt acaagcaatc caggagcgta acaatgaatt 180 caacattgat atttttcttc gctctctgct ttatcagctt cctttccacc tcggaagctg 240 cttccacgat gctcctcgag agctcatacc tgccactgaa ccagagctgt gtgcctggtt 300 ttctttacaa acgggataca ctcccacctc cacttcaggg cgtattaact tacacatgcc 360 aggaaccaag acctctcgta gaagaatcat acaacgatct cttgcgagcg atttctcaga 420 aaagctcaag cgatttccag aatgcttgtt cgttagcctt gagtttttcc agcgatttct 480 atcaacatgg actaaagacg ctgaaagacg tatctttttt agctgtcgag aaattcctgt 540 ggggtctaac acgcttgtgg agctcgctaa tcttggcgag cttctccgcg ttatggtggt 600 tggtgagcaa tttcacaact cccgtcttct gtctcgcctt gctgtacact gttacaagat 660 ttatggtgaa gatggtttta tttctttttg gaggattgcc gatttggatc atctcgatcg 720 ctttctcact cctgaagaaa tccttttcag ctcttcggtc tacaccgaaa tgtttgtatg 780 aaaaggctat agacggtttc aagagtttta ctatcccgca aagccctcca aaatcttgcg 840 tgattcccat cacccacgca agcggaaacc acgctggata cgccagctgt gtcaagctgt 900 acaacggaga aaatgccttg atgacggcaa ctcacgttct acgtgactgc cccaacgcag 960 tggctgtttc cgccaaaggg cttaaaactc ggattccact cgctgaattc aaaataattg 1020 cgaaatccga taaaggtgat gtcaccctcc ttcgcggccc ccccaattgg gaaggactat 1080 tgggctgcaa ggcggccaac gttataacgg ctaccaacct agcaaaatgc aaagcgtcta 1140 tattctctct cgacagagat ggctgggtta gcaactacgc cgaaatcgtt ggctcggaag 1200 gcacagacgt aatggttctg agccatacag aaggaggaca ctccggaagc ccctacttta 1260 atggcaaaac cattttaggg gttcattcag gtgccagcgc tattggaaat tacaatctaa 1320 tggcaccgat cccatccatc cccgggctca caagtcccac atatgtgttt gaaaccaccg 1380 caccacaagg aagagttttc gcacaagagg atatcactgc gatcgagaat ctctacgcag 1440 aagcagtgag gaaagcagat cccatgagtt ttaaatccat aacaggaaag aactgggctg 1500 atatggtgga agatgaagac atcttcttcg aaagcaaaga agatcttccg ggaaacggag 1560 tgcgcggcac cgtccgcgga ccaaacggag aaggcagctt catcccaaag acaaacaacg 1620 tcgatggaaa agagatgatg gagaaaataa tctcatctct agtggggaag ataaatctcg 1680 agaacatcga gaagaaagtg atagaagaga tttccgcgaa agcgatgaaa actccaaaac 1740 cccgccgcag aagagcccca aagaaacagc cggagagttc gaaggatacc tctcctcgct 1800 ctaccactgg gaagtaccaa ccaccccatg tgagatcccc ggcttccgcc actgcggcaa 1860 gctgccccaa tactaccacc ccaagcaaaa agaagaatcc agctggggga aaaccctcgt 1920 cgggaacaat cccgcgttgg gtgagaaaac aagcggcttc ggctggccca agttcggccc 1980 cgaagcagaa ctgaaaagcc tgcgtctgca ggcctcaagg tggctggaac gcgcccagtc 2040 cgcaaaaata ccctctgacg ctgagaggga gcgtgtgatt caaaagaccg tcgatgtata 2100 ctacccatgc caaactaatg gaccgacggc gactcgagga ggagcactga cctggaacaa 2160 cttcatgatt gatttcaaac aggcagtgtt ctcgctggag ctcgacgccg gaataggcgt 2220 cccctatatt gcctatggca agcccacaca ccgtgggtgg gtagaagatc agaaactcct 2280 tccagtccta gctcgattga ccttcatccg actacagaag atgttggagg ttaattttga 2340 agatatggga ccagaagaac tgatccagag cggtttgtgt gatcccatcc gattattcgt 2400 gaaaggtgag ccccacaaac aagcgaagct cgatgaaggc cgctaccgcc tcattatgag 2460 tgtttccctt gtggatcaac tggtagcccg ggttctgttt caaaatcaaa acaagcggga 2520 aattgccctg tggagggcta tccccagtaa acccggtttt ggcttgtcta cggacgagca 2580 agtgctggac tttgtgaaaa gtctggcccg tcaagtaggc actacgacaa cagacgtagt 2640 ggccaattgg aaagattact tgacgcccac ggattgctcc ggttttgact ggagcgttgc 2700 gaactggatg ctcgaagacg atatgatcgt tcgcaacaga ctcaccatcg atatcaaccc 2760 agctacagaa agattaagat cctgttggtt gagatgcgtc tcaaactcag tgctctgcct 2820 gagtgatggt acccttttag cccaaaccca cccgggcgtt cagaaaagtg ggagctacaa 2880 cacatcaagc tccaactccc ggatcagagt tatggccgcc ttccacacag gtgctgcctg 2940 ggcaatggcg atgggcgacg acgccctcga gtccaatccc gctgacctag agggctacaa 3000 aaacctaggt ttcaaagttg aggtttccgg acaactggaa ttctgctctc atgtttttag 3060 agcgccggac ctcgccctcc ctgtgaacga aaataaaatg atctacaaac tgatctatgg 3120 ctataatcca gggagcggaa acgctgaggt agtttcaaac tacttggccg cttgtttctc 3180 agttctgaac gagttgcggc atgatccagc gtccgttgaa cttctttact cgtggttagt 3240 cgacccggtg ctaccacaaa agataccagg agagtaaaga agaagaaaag tcagcttaca 3300 ttgaaatttt aaagaggttt ctgcaacagt aagagactaa agcaaaccca atagaagata 3360 caacggatta caaattccta gcaggcttcg ccgcaggctt cgtttcatcg attcccatat 3420 ccgtcatcag tatctatttt atctacctaa gaatctccaa acacgtacgc gaaattgtta 3480 atgaatacgg tcgtgggtag gagaacaatc aatggaagaa gacgaccacg gaggcaaaca 3540 cgacgcgctc agcgctctca gccagtggtt gtggtccaaa cctctcggac aacacaacgc 3600 cgacctagac gacgacgaag aggtaataac cggacaggag gagctgtttc taccagagga 3660 gcaagctcaa gcgagacatt tgttttctca aaagacaatc tcgcgggaag ttccagcgga 3720 gcaatcacgt tcgggccgag tctatcagac tgcccggcat tctctaatgg aatactcaag 3780 gcctaccatg agtataaaat ctcgatggtc attttggagt tcgtctccga agcctcttcc 3840 caaaattccg gttccatcgc ttacgagctg gacccacact gtaaactcaa ctccctttcc 3900 tcaactatca acaaattcgg gatcacaaag cccgggagga ggacgtttac agcgtcttac 3960 atcaacggga cggaatggca cgacgttgcc gaggaccaat tcaagatcct ctacaaaggc 4020 aatggttctt catcgatagc tggttctttt agaatcacca taaaatgcca attccacaac 4080 cccaaatagg tagacgagga acccggccct agcccagggc cttctccctc tccacaaccc 4140 acaccccaaa agaaatatcg tttcatcgtc tatactggtg tccccgtgac ccgtataatg 4200 gctcaatcta ctgatgatgc catctccttg tacgacatgc caactcaacg gtttcgctac 4260 atagaggacg agaacatgaa ctggacgaac ctcgattccc gatggtattc ccagaacaat 4320 ctaaaagcca tcccgatgat aataatacca gtccctcaag gcgagtggac cgtggaaatt 4380 tcgatggagg ggtatcaacc aacctcaagc accacagatc ctaataagga caaacaagat 4440 ggtctcattg catacaatga tgacctcaac gagggttgga atgtggggat ttacaacaat 4500 gtggagataa ccaacaacaa ggctgacaac actttgaagt atggccatcc agacatggaa 4560 ctcaacagct gtcattttaa ccaaggacag tgtctggaga gagatggaga tttgacttgt 4620 cacgttacaa ccactggtga caacgcctcc atctttattg ttggacccgc tgtccagaag 4680 caatcaaaat ataattatgc cgtttcatac ggagcttgga cagatcggat gatggagata 4740 gggatgatag ccgtagcact tgatgaacaa ggctcatccg gttccgcaaa gaaagtgaaa 4800 agaccaaaga gagctgggca ctccatggca gtctcaacct gggagactat aaactcaccg 4860 gagaaggaaa actccgagca actcgaaacc agtcaaagac aagactttaa aactcctctc 4920 atggttgttg ggagttccga caagctggac gtcgaagaag gaggcttgcc ccttcctgcc 4980 gaagaagaca ttcccgattt tattggaaat gacccttggt tcaacatatc aaccaaggag 5040 ccgcaggaag aagaggctat gtcgtcaagg agtggtctta gaccccagtt gaagcctcct 5100 ggcctgccaa aaccacaacc ggttagaaca attcgaagct ttgatccaac gccggatttg 5160 gttgaagcat ggcgacccaa tgtgaacccc gggccggata ttctaaagaa gatgtggcag 5220 ctgccactat cattgccgga ggttctatta aagacggccg ttctatgatt gataaacgaa 5280 ataaagcccg atgtgaaccc cgggtattct aaagaagatg tggcggctgc cactatcatc 5340 gcagggggtt ccattgaaga cggccggtct atgattgata aacgcaacaa tgccatattg 5400 accggtcgca agggttgggg ttcttccttg gcttcctcct taacaggggg aacgctcaag 5460 gcctccgcaa agtcggagaa gcttgctgca ctcacaacga gtgagagggc caaattcgaa 5520 cgaatcaaac gtcagcaagg tgccacccga gcttcagaat tcttagaaca acttctggct 5580 ggcaacaacc ccgacccacc gtcaagcccg tgacattaaa caaggaacga ctccgcaagg 5640 ataggcaacg agtgttttac gctgggataa ctgtatacta cccatgccaa actaatgg 5698 //