ID JQ860108; SV 1; linear; genomic RNA; STD; VRL; 6225 BP. XX AC JQ860108; XX DT 25-JUN-2012 (Rel. 113, Created) DT 25-JUN-2012 (Rel. 113, Last updated, Version 1) XX DE Cymbidium mosaic virus clone NJ-1, complete genome. XX KW . XX OS Cymbidium mosaic virus OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Potexvirus. XX RN [1] RP 1-6225 RA Zhang C., Li Y.; RT "Sequences and Infectious Clones of Cymbidium Mosaic Virus Strain Isolated RT from Nanjing"; RL Unpublished. XX RN [2] RP 1-6225 RA Zhang C., Li Y.; RT ; RL Submitted (29-MAR-2012) to the INSDC. RL Nanjing Agricultural University, College of Horticulture, 1# Weigang, RL Nanjing, Jiangsu 210095, China XX DR MD5; 1ce0a87b2c795aac10af9d6d22744bf3. XX FH Key Location/Qualifiers FH FT source 1..6225 FT /organism="Cymbidium mosaic virus" FT /host="Phalaenopsis sp." FT /mol_type="genomic RNA" FT /country="China:Nanjing" FT /collection_date="09-Aug-2011" FT /clone="NJ-1" FT /db_xref="taxon:12178" FT gene 73..4326 FT /gene="RdRp" FT CDS 73..4326 FT /codon_start=1 FT /gene="RdRp" FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:I6RHT7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I6RHT7" FT /protein_id="AFM45301.1" FT /translation="MARVRDTLDRLRDPSVLTSINEEAHRHIRPVLASALVNCPYALTE FT EEADCLENLGVTVNPFAIQTHTHAAAKTVENRMLEIVGTHLPKEPSTFIFLKRSKLRYP FT RRAANNKDIFQNQLIEPKDLLRYDDESCGVMPECSTSTAYISDALHFLSYTQLGKIFQD FT SPKLKILLATLVLPVEALHRHPSLYPAIYTLNYHKDGFEYIPGNHAGGAYFHEYSTLQW FT LTLGKLIINDPLKVKKPLTLTVQLIESLGANHLLLITRGDLRTPKLRTFAKDTHVLLPQ FT IFHPKGMNANKPLSKRRAMQLWLYAKSVKVVSERDLYAKVRQLIPTSELDLFDPVEVTH FT LVNYLLFISHLSSVSSYDDILSSNIFQHFTIPIKNKIRELVQLFTGADQFNQLLKALDW FT QTFSYSMPVETIHTRAANYQVAKTLRMCRDLPCDEYDRVKDVLRQLPDGVTLFEENDKQ FT DPSSPEAENSEDDTDSVDFNLLPTHDLPPNFDPLDKGKSIIVDTGNPSTSAASAVTFAA FT GINSSASTNISFGSFTPEAEATPLSPMEKLPRDLWIPLLEQHGFKGKSKLYKPTGELIC FT PITEIKTVPHCPFPSKVPDGCVLALKSIKRFATKMTMLSSRASAYTSDIKNSRTGKLLP FT AMNMPWKASLAYVTQHGDREIPGVVIHGAGGCGKSYAIQKWLRSCSDPCAATVVCPTLE FT LRNDWLNKIGSYEQTNIKTFEKALIQPVNNVVIFDDYTKLPPGYIETMVYHHHNLDLII FT LTGDPMLSAYHETNRDAYISLIPDASAIFSEYCEFNINATHRNVAELACLLGVYSERQG FT KLTVSFSAAPLSKGKVPILVPSRMKQEAFADVGNRCMTYAGCQGLTAPKIQILIDNHTT FT FCSGQTLYTCLSRAVDQIHFINTGPNSQAFWTKLESTPYLKAFLDNYREEQTERLTSTA FT PEPEVREPAAPKTHIPVENTSGLRISALDLPEKHSREIFNKAHGFSNAIQGDGVAPMFQ FT HQQAKDETLFKATIDAGLSITHPDENKREFAMKKDTGDVLFVNYKVIMNLPHEPVPFEP FT RLWNICKAEVQNTYLAKPIANLINGTLRQSPDFPANKIALFLKSQWVKKIEKIGAIPVK FT PGQTIASFMQETVMLYGTMARYLRKMRQRYQPAHIFINCEKTPEDFNKFILEHWSHKQV FT AXTNDFTAFDQSQDAAMLQFEVIKARYFNIPEDVIEGYIQIKLTAEIFLGTLSIMRLSG FT EGPTFDANTECSIAYNATRYHINEDVTQVYAGDDMAMDHVCPEKKSFKALEKKLKLTSK FT PLYPKQRPGDWADFCGWTITPYGIIKNPKKLDACLQLHTQLGDADKVARSYALDAKYAY FT DLGDRIHEILNADEMTSHFNVIRQLHKLHQQDVLVPPETTVATAVKSQPDVEDLWLRAL FT SFPDWTDRAQLLKRG" FT gene 4332..5033 FT /gene="TGB 1" FT CDS 4332..5033 FT /codon_start=1 FT /gene="TGB 1" FT /product="triple gene block 1" FT /db_xref="GOA:I6QQZ4" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:I6QQZ4" FT /protein_id="AFM45302.1" FT /translation="MELTYLVRLLERNKFERTNLPLSSPLVVHGIAGSGKSTILTTFHH FT HYPAHPIFSHSPTLLDPSNRIYQQCITTDSVPDGAIVDEYNYKALDYSRCLALFGDPLQ FT LPHSLQPHYYSSRTHRYGPKLTSLLNELFHLSITSLAPVDSLDYADPFAVDPSGFTIAD FT EEVYNFVSQQVPGTLLPLDTVGLEYSSVSFYCSDLRRCVVLRPLSTFIALTRAKGNLTI FT FDFNARFSSTT" FT gene 5008..5346 FT /gene="TGB 2" FT CDS 5008..5346 FT /codon_start=1 FT /gene="TGB 2" FT /product="triple gene block 2" FT /db_xref="GOA:I6RDM8" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:I6RDM8" FT /protein_id="AFM45303.1" FT /translation="MPGLAPPPDHSKSLFVLAIGITVVSALFVLKSHTFPIAGDNIHRF FT PSGGQYKDGTKQINYCPPTHARYPKYPDYKWLAATAAIVIPLCLYISYHPGNNIRRICP FT CCNTYHHP" FT gene 5201..5476 FT /gene="TGB 3" FT CDS 5201..5476 FT /codon_start=1 FT /gene="TGB 3" FT /product="triple gene block 3" FT /db_xref="GOA:I6R7Q2" FT /db_xref="InterPro:IPR003411" FT /db_xref="UniProtKB/TrEMBL:I6R7Q2" FT /protein_id="AFM45304.1" FT /translation="MLGTRNIPTTSGLPLPPPSSSLSAYIFPTILAIIFAVFALVAIHI FT TTPEPFCTIHIDGASITITNCPDPAAILNKVAIGPWRGLSYHNNLK" FT gene 5479..6150 FT /gene="CP" FT CDS 5479..6150 FT /codon_start=1 FT /gene="CP" FT /product="capsid protein" FT /db_xref="GOA:I6QUN2" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:I6QUN2" FT /protein_id="AFM45305.1" FT /translation="MGEPTPTPAATYSAADPTSAPKLADLAAIKYSPVTSSIATPEEIK FT AITQLWVNNLGLPADTVGTAAIDLARAYADVGASKSGTLLGLCLTKPDVRRAALAAQIF FT VANVTPRQFCAYYAKVVWNLMLATNDPPANWAKAGFQEDTRFAAFDFFDAVDSTAALEP FT AEWQRRPTDRERAAHSIGKYGALARQRIQNGNLITNIAEVTKGHLGSTNTLYALPAPPT FT E" XX SQ Sequence 6225 BP; 1648 A; 1812 C; 1226 G; 1538 T; 1 other; gaaaaccaaa cctcacgtct aatccgctat ccgagcgaaa tagcagcccc agcataggca 60 atatcgcgct ccatggcccg agtacgtgat acccttgaca ggctccgtga tccgtcggtc 120 cttacctcaa ttaacgagga agcccaccgg catatccgcc ctgtccttgc ctcggcactc 180 gtaaactgcc cttacgcgtt gaccgaggaa gaggccgact gtctcgaaaa tctcggcgtg 240 acagtcaatc ccttcgccat ccaaacgcat acacatgctg cagctaaaac tgttgaaaat 300 cgcatgttgg aaattgttgg cacccacctt cctaaagaac cctccacctt catattcctt 360 aagcgaagca agcttcgcta cccacgacgc gccgccaaca acaaagacat atttcaaaat 420 caactcattg agcctaaaga cttattgcgt tacgatgacg agtcttgtgg agtaatgcca 480 gaatgctcca caagcacagc ctacatcagc gatgctctcc atttcttgag ctacactcag 540 cttgggaaaa tattccagga ttctcccaag ctgaaaattc tgctggcaac cctggtcctc 600 cccgtggaag ctctccatag gcacccatct ctttatcctg ccatctacac tttgaactac 660 cataaggatg gctttgaata tatacccggc aatcacgctg gaggtgccta cttccacgag 720 tactccactc tgcagtggtt gactctcggg aaactaatca tcaatgatcc tttgaaagta 780 aagaaacccc ttactcttac tgtacagcta atagaaagtc taggggccaa ccatctttta 840 cttatcaccc gaggggatct tcgcacaccc aaactgcgga cattcgctaa agatacccat 900 gttctactac cacaaatatt ccatcctaag ggtatgaatg cgaataaacc attgtccaaa 960 cgtagagcta tgcagttgtg gctctacgcc aaatctgtta aagtggtgag cgaacgggat 1020 ctttatgcta aggtgaggca attgatcccg acttctgagt tagacctttt tgaccctgtg 1080 gaggtgaccc acttggtcaa ttacttacta ttcatcagtc acctttcctc cgtatcttcg 1140 tatgacgaca tcttgtcgtc taacatattc caacatttta ccattccaat caagaacaag 1200 atacgggaat tggtccagct attcaccgga gcggaccaat ttaatcaact gctcaaagct 1260 ctcgactggc aaacattttc atactctatg ccagtagaga ccatccatac acgtgcggcc 1320 aattatcaag tcgctaaaac gcttcgcatg tgcagagacc taccatgcga tgaatatgat 1380 cgtgtaaagg acgtcctcag acaactccct gacggagtga cgttgtttga ggaaaacgac 1440 aagcaagatc cctcaagccc tgaagccgag aactctgagg atgacactga ctccgtcgac 1500 tttaaccttc tccccactca tgacttgccc ccaaactttg atcctctaga caagggcaag 1560 tccattatcg ttgatactgg caacccctca acttctgcgg catctgccgt cacttttgct 1620 gccggtatca actcctcagc ctccacaaat atttcatttg gaagcttcac acctgaggct 1680 gaggccaccc ccctttcccc catggaaaag ttaccacggg atctttggat tcccctactg 1740 gaacaacatg gctttaaagg aaagagtaag ctgtacaagc ccacgggtga actaatctgc 1800 cccataactg aaatcaaaac agttccccat tgcccctttc ccagtaaagt cccggatggc 1860 tgtgtgcttg cgcttaaatc tattaagcgt ttcgccacga aaatgactat gctcagttct 1920 cgagcttccg cctacacttc cgacattaag aatagtagga ctgggaagct cctacccgcc 1980 atgaacatgc cctggaaagc ctctctcgcc tatgtcactc aacatggcga tagagaaatt 2040 cctggcgtcg tgatccatgg tgccggtggc tgtggcaaat cttatgccat ccaaaaatgg 2100 ttaagaagct gctctgatcc ttgtgcagct actgtggtat gcccaactct agaactacgt 2160 aatgactggc tcaataaaat cggaagctac gaacaaacga atatcaaaac tttcgagaaa 2220 gctttaattc agccagttaa caacgtggtt atctttgatg actacaccaa gctgccccct 2280 gggtacatcg agaccatggt gtaccatcac cacaaccttg acctgattat attaactggg 2340 gatcctatgc tgagtgccta ccatgaaact aacagggatg cctatatctc tttgatacct 2400 gatgcctctg ccattttcag tgagtactgt gagttcaaca tcaacgccac ccaccgtaat 2460 gtggctgaac tcgcttgcct cctcggtgtc tattccgaac gccaaggcaa actcactgtc 2520 tccttcagcg cagccccact ttctaaaggc aaagtaccca ttctggtacc ctctagaatg 2580 aagcaagagg cttttgctga tgtcggcaac cgttgcatga cttatgccgg ttgccagggt 2640 ctcactgccc ctaaaatcca aattttgata gacaaccaca ctacattctg ctctggacaa 2700 acattataca cttgtctatc acgagctgtg gaccaaatcc acttcattaa cactggtccc 2760 aactcacagg ctttctggac caaattggaa tcaacgccgt acctaaaagc tttcctcgat 2820 aattaccgtg aggaacaaac tgaacggcta acatctaccg ccccagagcc tgaagtccgt 2880 gagccagcgg ccccaaaaac gcatattcct gtcgaaaata catctggctt acgtatttct 2940 gcacttgacc tgccggaaaa gcactctcgc gagattttca acaaggcgca tggcttttcc 3000 aatgctattc agggagatgg cgtagctccc atgttccagc atcaacaggc aaaggacgaa 3060 acccttttca aggccaccat agacgctgga ctctctataa cccatcctga tgaaaataaa 3120 agagagtttg ccatgaagaa agacactggg gacgtccttt ttgtcaatta caaagttata 3180 atgaatctac ctcatgagcc tgttcctttt gaacctcgtc tctggaacat ctgcaaagct 3240 gaagtgcaga acacatacct agccaaaccc attgcaaatc ttatcaatgg taccttaagg 3300 caatcacctg attttcctgc caataaaata gccttattcc tgaaatcgca atgggtgaag 3360 aaaattgaga aaattggagc cataccagtt aaacctggcc agactattgc atcatttatg 3420 caagagactg ttatgctgta cggcaccatg gcacgctacc tccgtaagat gcggcaaaga 3480 tatcaacccg cacacatatt tatcaattgt gaaaagactc cggaggactt caataaattc 3540 atacttgaac actggtcaca caagcaagtt gcccrcacca acgactttac tgcttttgac 3600 cagtcacaag atgctgccat gctccaattt gaagttatca aagctaggta cttcaatatt 3660 cccgaggatg ttatagaagg atacatccaa attaagctca ctgctgaaat cttcctcggg 3720 acactttcca tcatgcgcct atctggtgaa gggccaacct tcgacgccaa tactgaatgc 3780 tctattgcct acaacgccac cagataccat attaatgaag acgtcaccca ggtatacgcc 3840 ggtgacgaca tggccatgga ccatgtgtgc cctgagaaga agagcttcaa agctttggaa 3900 aagaaactga aattaacctc aaaacctctc tatccaaagc aaagacctgg agactgggcc 3960 gatttctgcg gctggactat aacgccttat ggcataatta aaaatcctaa gaaacttgac 4020 gcatgcctac aattgcacac ccaactgggc gatgccgata aagtcgctag gtcatacgcg 4080 ctcgatgcca agtatgctta tgatctgggc gaccgcattc atgagattct gaatgctgat 4140 gaaatgacca gccacttcaa tgttataaga cagttgcaca aactgcatca acaagatgtg 4200 ctggtcccac ccgagactac cgtagccaca gcggtaaagt ctcaacctga cgtggaggat 4260 ctgtggctcc gtgcgcttag cttccctgac tggacggacc gcgcccaact tttaaaacgg 4320 ggttaatttt gatggagcta acgtacttag ttagattact agagcgcaat aaatttgagc 4380 gcaccaatct gcccctttcc tcacccttgg ttgtacacgg aatcgctggc agtggaaaat 4440 ccaccatcct cacaactttc catcaccatt acccggctca ccccatcttc tcacacagtc 4500 ccacattgct tgaccctagc aaccgcatat accaacagtg catcactacc gattcagtgc 4560 cagacggtgc tattgtagac gagtacaatt acaaagcact cgactactcc cgctgtctag 4620 ccctcttcgg tgatccactc cagcttccac attcacttca gccccactac tactccagtc 4680 gcacccaccg ctacggtccc aagctcacta gcctactcaa cgaactcttc cacctctcta 4740 tcacttctct tgcccccgtc gacagccttg attacgctga tccttttgct gttgacccct 4800 ctggatttac cattgctgac gaggaagtgt acaactttgt ctctcagcag gttcccggca 4860 ctttgttgcc gctcgatact gtaggtttag aatattccag tgttagcttt tactgcagtg 4920 atctccgacg ctgtgtcgta ctaaggccac tcagcacctt catcgctctc acccgcgcca 4980 agggcaacct caccatcttc gatttcaatg ccaggtttag ctccaccacc tgaccactcc 5040 aagtcactct tcgtccttgc tattggcata actgtggtct ctgcattatt tgtgctaaaa 5100 tcccacactt ttccaattgc aggcgacaat attcaccgct tcccatccgg cggccaatat 5160 aaagacggta ctaagcagat aaactactgt ccacctactc atgctaggta cccgaaatat 5220 cccgactaca agtggcttgc cgctaccgcc gccatcgtca tccctctctg cctatatatt 5280 tcctaccatc ctggcaataa tattcgccgt atttgccctt gttgcaatac atatcaccac 5340 ccctgagccc ttctgtacaa tacacataga cggggcgtct attactatca ctaactgccc 5400 tgatcctgca gctatattaa ataaagtagc cataggcccc tggcgagggt taagttacca 5460 caataatttg aaataatcat gggagagccc actccaactc cagctgccac ttactccgct 5520 gccgacccca cttctgcacc caagttggcc gacctggctg caattaagta ctcacctgtc 5580 acctcctcca tcgccacccc cgaagaaatt aaggccataa cccaattgtg ggttaacaac 5640 cttggcctcc ccgctgacac cgtaggtacc gcggccattg acctggcccg cgcctacgct 5700 gacgtcgggg cgtccaagag tggtaccctg ctcggtctct gccttacgaa acctgatgtc 5760 cgtcgcgccg ctcttgccgc gcagatcttc gtggccaacg tcaccccccg ccagttttgc 5820 gcttactacg caaaagtggt gtggaatctg atgctggcca ctaacgatcc gcccgccaac 5880 tgggccaagg ctggtttcca ggaggatacc cggtttgccg ccttcgactt cttcgatgcc 5940 gttgattcca ctgccgcgct ggagcctgct gaatggcagc gccgccctac tgaccgtgaa 6000 cgtgctgcgc actcgatagg gaagtacggc gcccttgccc gccagcgtat ccaaaacggc 6060 aacctcatca ccaacattgc cgaggtcacc aagggccatc ttggctccac taacactctc 6120 tatgctctgc ctgcaccccc tactgaataa cgccaaactt aataaggcgt gtggttttct 6180 aaagtttgtt tccactactg gcataataag tttagccaga taaat 6225 //