ID JQ821386; SV 1; circular; genomic DNA; STD; VRL; 2602 BP. XX AC JQ821386; XX DT 19-JUN-2012 (Rel. 113, Created) DT 19-JUN-2012 (Rel. 113, Last updated, Version 1) XX DE Jacquemontia mosaic Yucatan virus segment DNA-A, complete sequence. XX KW . XX OS Jacquemontia mosaic Yucatan virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2602 RA Torres-Herrera I., Cardenas-Conejo Y., Ambriz-Granados S., RA Moreno-Valenzuela O., Arguello-Astorga G.R.; RT "Jacquemontia mosaic Yucatan virus, a new begomovirus of the SLCV Clade"; RL Unpublished. XX RN [2] RP 1-2602 RA Torres-Herrera I., Cardenas-Conejo Y., Ambriz-Granados S., RA Moreno-Valenzuela O., Arguello-Astorga G.R.; RT ; RL Submitted (26-MAR-2012) to the INSDC. RL Molecular Biology of Plants, Instituto Potosino de investigacion Cientifica RL y Tecnologica (IPICYT), Camino a la Presa San Jose 2055. Col. Lomas 4 RL seccion, San Luis Potosi 78216, Mexico XX DR MD5; f04313a1411d2d77c762c2cb47363d48. XX FH Key Location/Qualifiers FH FT source 1..2602 FT /organism="Jacquemontia mosaic Yucatan virus" FT /segment="DNA-A" FT /host="Jacquemontia pentantha" FT /mol_type="genomic DNA" FT /country="Mexico:Yucatan, Merida" FT /collection_date="2007" FT /db_xref="taxon:1198450" FT gene 193..948 FT /gene="AV1" FT CDS 193..948 FT /codon_start=1 FT /gene="AV1" FT /product="capsid protein" FT /note="CP; capsid protein; encapsulates the viral genome; FT AV1; AR1" FT /db_xref="GOA:I6QXR1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:I6QXR1" FT /protein_id="AFM38720.1" FT /translation="MPKRDAPWRSHPGTAKVSRNANYSPRGAMGPKYDKTSAWVYRPMY FT RKPRVYRLLRGPDVPKGCEGPCKVQSYEQKHDISHVGKVICISDVTRGNGITHRVGKRF FT CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATV FT KNDLRDRYQVMHRFYAKVTGGQYASNEQALVRRFWKVNNYVVYNHQEAGKYENHTENAL FT LLYMACTHASNPVYATLKIRIYFYDSIMN" FT gene complement(945..1343) FT /gene="AC3" FT CDS complement(945..1343) FT /codon_start=1 FT /gene="AC3" FT /product="replication enhancer protein" FT /note="REn; rep-interacting protein; enhances function of FT Rep protein; AL3; AC3" FT /db_xref="GOA:I6R3N5" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:I6R3N5" FT /protein_id="AFM38719.1" FT /translation="MDSRTGEPITALQAESGVFIWEVPIPLYFKIYPVEDLPYKATRIY FT HVQIRFNNNLKRHLDLHRAYVNFQVWTTSLTASGTTYLAWFRHLVMLYLDRLGAISINN FT VIRAVRFATDKPYVNHVLESHSIKFNIY" FT gene complement(1084..1479) FT /gene="AC2" FT CDS complement(1084..1479) FT /codon_start=1 FT /gene="AC2" FT /product="transactivator protein" FT /note="TraP; transcription activator; activation oflate FT genes; silencing-suppressor; AL2; AC2" FT /db_xref="GOA:I6QMX5" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:I6QMX5" FT /protein_id="AFM38718.1" FT /translation="MQPSSSSTPPSIKPKHRIAKSRAIRRKRIDLDCGCSIYVHINCAN FT HGFTHRGTHHCSSSREWRFYLGGTNSPLFQDLPRGGSTIQSDEDLPRSDPVQQQPEEAS FT GSTQGLRELPGLDDIPDSFWDDLFSVV" FT gene complement(1400..2470) FT /gene="AC1" FT CDS complement(1400..2470) FT /codon_start=1 FT /gene="AC1" FT /product="replication initiator protein" FT /note="Rep; rolling-circle replication protein; initiator FT of virus replication via a RC mechanism; AC1; AL1" FT /db_xref="GOA:I6QQ57" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:I6QQ57" FT /protein_id="AFM38721.1" FT /translation="MPRQPNKFRLASRNIFLTYPQCSLDKNHVLELLQNLPWTIVRPTY FT IRVAREIHSDGNPHLHILIQLSGKSNIKDERFFDISHPSRSTPFHPNIQAAKDTNAVKN FT YITKEGDYCESGQYKVSGATRTNKEDVYHNALHAESMAAAIAIIKAGDPVRWITQGHNI FT RSNLQFDFAKQKEPWTPKFPLSSFNNVPEEMQEWADDYFGRDSAARPLRPRSIIIEGDS FT RTGKTQWARTLGSHNYISGHLDFNSKTYSDDVEYNVIDDVAPNYLKMKHWKELIGAQTD FT WQSNCKYGKPREIKGGLPAIVLCNPGEGTSYKDFLDKEENAPLKRWTLQNATFIFLDSP FT LYQTQTQDCQIQGNTS" FT gene complement(2008..2388) FT /gene="AC4" FT CDS complement(2008..2388) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="UniProtKB/TrEMBL:I6R6Z1" FT /protein_id="AFM38722.1" FT /translation="MSWNCFRICHGQSSVQHTSESPERYTLTETPISTSSFNFLENQTS FT RMNDFSTYLTHQGLPLSTLISKQPKTPTPSRITSPKRVIIVNPDNTRCLGQQEQTRRTY FT TTTPFTQSQWRQLLQSLRQGIQ" XX SQ Sequence 2602 BP; 635 A; 560 C; 651 G; 756 T; 0 other; accggatggc cgcgctggcg tcccccgtcc gtacagtggt cccctggaaa aagctaggtc 60 cttaatgatg acaaaccgcg ccgtccaatc agaatgggcg ctggaaagct aattaattaa 120 aacttggtga gcaaggacca cttcctttaa atttggaggg aactcagcag tcccgatgca 180 ctttattttg aaatgccgaa gcgggatgcc ccatggcgct ctcacccggg taccgccaaa 240 gtcagccgca atgccaatta ctcgcctcgt ggagctatgg gcccaaaata tgataaaacc 300 tcggcttggg tttaccggcc catgtacagg aagcccaggg tatatcgttt gttgagaggc 360 ccagatgtcc ctaagggatg tgaaggccca tgtaaggtcc agtcttatga gcagaagcat 420 gatatctccc atgttggtaa ggtcatctgt atctccgatg ttactcgtgg caacggtatc 480 acccaccgtg ttggtaagcg gttctgtgtt aagtccgtct atattctggg caagatatgg 540 atggatgaga atattaagct gaagaaccac acgaatagcg ttatgttctg gctggtgagg 600 gacaggagac cctatggcac ccccatggat tttggtcagg tgttcaacat gtacgacaac 660 gagcccagta ctgccactgt gaagaacgat ctccgggatc gttatcaggt tatgcaccgg 720 ttctatgcta aggtcaccgg tggtcagtat gccagcaatg agcaggctct ggtgaggagg 780 ttctggaagg tgaataacta cgtcgtctac aaccaccaag aggccgggaa gtacgagaat 840 catacggaga acgccctatt attgtatatg gcctgtactc atgcctctaa ccctgtgtat 900 gcgacgttga aaattcggat ctatttttat gattcaataa tgaattaata aatattgaat 960 tttattgaat gactttccag tacatgattt acatatggtt tgtcagttgc aaatctaaca 1020 gctctaatga cattattaat tgaaatagca cctaatctgt ctaagtacaa catcactaaa 1080 tgtctaaacc acgctaaata agtcgtccca gaagctgtca gggatgtcgt ccagacctgg 1140 aagttcacgt aagccctgtg tagatccaga tgcctcttca ggttgttgtt gaaccggatc 1200 tgaacgtggt aaatcctcgt cgctttgtat ggtagatcct ccacggggta gatcttgaaa 1260 tagaggggaa ttggtacctc ccagataaaa acgccactct ctgcttgaag agcagtgatg 1320 ggttcccctg tgcgtgaatc catgattggc gcaattgatg tggacgtaaa tggaacagcc 1380 gcagtccagg tctattcgtt tacgacgtat tgccctggat ttggcaatcc tgtgtttggg 1440 tttgatagag gggggagtcg aggaagatga aggttgcatt ctgaagagtc cagcgtttta 1500 gaggagcgtt ttcctctttg tctaggaagt ctttatagct ggtcccctct cctggattgc 1560 aaagcacgat tgctggtagt ccccctttta tttcacgtgg tttaccgtac ttgcaattgg 1620 attgccagtc tgtttgggcc ccaatcagct ctttccagtg cttcattttc aaataatttg 1680 gagcaacgtc atcaattacg ttatactcca catcatctga atatgtcttg gaattgaaat 1740 ccagatgtcc gctgatgtag ttatgggacc ctaatgttct ggcccactgt gttttaccag 1800 ttcttgaatc accttctatg atgatacttc tgggtctcaa tggccgcgca gcggaatccc 1860 ttccaaaata atcgtcagcc cactcttgca tttcctctgg gacgttatta aatgatgaca 1920 atgggaactt tggagtccat ggctctttct gtttggcaaa atcgaactgt aaatttgatc 1980 taatattgtg gccttgggtt atccatctta ctggatcccc tgccttaatg attgcaatag 2040 ctgccgccat tgactctgcg tgaagggcgt tgtggtatac gtcctccttg tttgttcttg 2100 ttgccccaga caccttgtat tgtccggatt cacaataatc accctctttg gtgatgtaat 2160 tcttgacggc gttggtgtct ttggctgctt ggatattagg gtggaaaggg gtagaccttg 2220 atgggtgaga tatgtcgaaa aatcgttcat ccttgatgtt tgattttcca gaaagttgaa 2280 tgaggatgtg gagatggggg tttccgtcag agtgtatctc tctggcgact cggatgtatg 2340 ttggacggac gattgtccat ggcagattct gaagcagttc caagacatgg tttttgtcta 2400 gactgcactg cggatatgtt aggaagatat ttctagaggc taggcggaat ttattaggtt 2460 gtcgtggcat ttttgtaaat atgagtgagg acaccaggct ctctccggat actagaactc 2520 tatatgttgg tgtcctggtg tcccttatat atgcaaggag tcccaggaca ccaggggcaa 2580 aagcggccat ccgtataata tt 2602 //