ID JQ814852; SV 1; linear; genomic RNA; STD; VRL; 7543 BP. XX AC JQ814852; XX DT 06-JUN-2012 (Rel. 113, Created) DT 12-JUL-2017 (Rel. 133, Last updated, Version 4) XX DE Ia io picornavirus 1, complete genome. XX KW . XX OS Ia io picornavirus 1 OC Viruses; Riboviria; Picornavirales; Picornaviridae. XX RN [1] RP 1-7543 RX DOI; 10.1128/JVI.01394-12. RX PUBMED; 22855479. RA Wu Z., Ren X., Yang L., Hu Y., Yang J., He G., Zhang J., Dong J., Sun L., RA Du J., Liu L., Xue Y., Wang J., Yang F., Zhang S., Jin Q.; RT "Virome analysis for identification of novel Mammalian viruses in bat RT species from chinese provinces"; RL J. Virol. 86(20):10999-11012(2012). XX RN [2] RP 1-7543 RX DOI; .1038/ismej.2015.138. RX PUBMED; 26262818. RA Wu Z., Yang L., Ren X., He G., Zhang J., Yang J., Qian Z., Dong J., Sun L., RA Zhu Y., Du J., Yang F., Zhang S., Jin Q.; RT "Deciphering the bat virome catalog to better understand the ecological RT diversity of bat viruses and the bat origin of emerging infectious RT diseases"; RL ISME J 10(3):609-620(2016). XX RN [3] RP 1-7543 RA Wu Z., Yang L., Hu Y., Ren X., Yang F., Yang J., Jin Q.; RT ; RL Submitted (22-MAR-2012) to the INSDC. RL MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen RL Biology, Chinese Academy of Medical Sciences & Peking Union Medical RL College, No. 6 Rongjing East Street, Yizhuang, Beijing, Beijing 100176, RL China XX DR MD5; c1b42c50073a48f3636d720b9bd76461. DR EuropePMC; PMC3457178; 22855479. DR EuropePMC; PMC4376133; 25726971. XX CC ##Assembly-Data-START## CC Assembly Method :: DNASTAR Lasergene v. 7.1.0 CC Sequencing Technology :: Sanger dideoxy sequencing; Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..7543 FT /organism="Ia io picornavirus 1" FT /host="Ia io" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Oct-2010" FT /db_xref="taxon:1195279" FT 5'UTR 1..240 FT CDS 241..7356 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:I3VR63" FT /db_xref="InterPro:IPR000081" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR014838" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="InterPro:IPR036203" FT /db_xref="UniProtKB/TrEMBL:I3VR63" FT /protein_id="AFK85008.1" FT /translation="MAFLFSCNKTETKTAVTSKPRHYTHWSQGPVCSHVHDVCVLDHQG FT KVSFSLPHAIQISSNRLHRRRFVRCGAAASRADNKVQKDQTASAGRDIYQINYYGAEYS FT SAHPQAATHMDPEKFTKPIADLATGVGPALASPSVEECGYSDRLAQLTAGNSTITTQEA FT ASAVVAYEVWPEYTPGVGESIDRQSEPGPAVDRFYTLDSVEWSNSVKGWFISLPGALGD FT LGVFGQNCAYHFLMRSGFCVHVQINASQFHQGMLMVAAIPEAQSSSGERSHDFGTLTDA FT DFRDHPVAQLTLFPHQLINLRTNNSATLVLPYVNASPSESALTHDYWTIFIVPVVPLSF FT NSGATPTIPITVSIAPMKSQFSGLRGSKKIGDGWATFQGIPTFSLPGSGEFVTTIRNAD FT FPALPDFEETPLHKIPGEVTNLLEVAQIDTFCTVSNNSNVLNLDVTAQGAGERIAAWDL FT SLDSNFLSSTYLSKVTRWFSNYRGSLNITFMFCGSKMATGKLLLAYTPPGGDAPTSRRE FT AMLATHMVWDLGLQSACTFTVPWISQTAYRMGHTEGNVLSYRGYVTVFYQTHIVVPPGA FT PSTCQIVVLASAASDFVCRAPTDSAYYQGLKNQIAEVVNTSLQTKPVTLDIPAVTGPSV FT PDNLSVQTGDAPALTAPETGASATTEASTTMETRDLATRFSARETQVTNFMSKYALFKK FT GTIRAGSSQQSSILKVPLWFSDTDSTQKAVRAKYRMFTYIRCGFDVNVVISLSADGRSN FT NPVRPAPTVQMIYCPPGCPTPTDAKSPEWYLPTTPSVFQKAGETISLRIPYMGMASAYA FT SFYDGYANFSPTAAQYGQFPGNYIGTICIRFAQDDVTAESSEAIASCFCYARPTNVRAF FT CPRPIVTLKERTVLGESRGRVLCVSDDDPSGTHYLKQCEDGTERRMISFGLGSSKPIVT FT GSKIAINKAPEHVQQFFDLCYLAKHLDGTTYHIFPLNPFTALMPDHLFRYSMSFKKNQV FT DVAVNIPFKLLWRDATMDLACFRLDKPFFEDSICVCTDCDRKNLWTVCRSSLFNFAMFC FT GDAERVGDQFVYDSDEDQIGHIQRNLIEVKAVIQPGHCGSPLICEHGICGMCTAGDGET FT GSWFTEFYLADEMSSNFQGPEEQGIKDYCADIAKEMGAAFSASTMDQMAGRFKNAIEGV FT VLDKVNVKSLVVKKIIQLVVKLITVITMIARSEKKIETAAGLGVLLGIDLLSTDPFVWL FT EERVIDMLGLDKKRHRCATQQGIVEWIKDFNAACTAAKGLEWLGEKIWKFIDWFKKLVK FT KEEPERRKFIQRLEELPLMMEHIDKLMQGRGKYPEDQIKKVCEAMIELKKLADIYGVER FT NAATVQIVKYHTKALDLLQSLSAGRTEPVALLIHGSPGTGKSLATEIIGRALSERMGAN FT RPYSLPPDPKHFDGYAQQPVVIMDDLGQNPDGEDCKLLCQMVSSTEFIPPMASLEDKGM FT AFTSSFVLASTNLQELKPPTVTEPKAIKRRFFLDLHISLQKDFDKQGKLSASSALTQCS FT SLHCTNFKKCCPMICGKAILLEDKTTGVRYCVDDVVSMLVREHESRKGCGSKLDALFQG FT MSNEDCNTVEMKPVDEWLESDHDKLPQQLFTYEELRQRGESIPCPQLIADLVRAVPTQA FT VLDYVKSKGWMVPAPVEKIVVQKAAYDWISIITATVTIMSAVGSLLGFIYIMYQVFAFP FT QGAYSGNPTPQPKKPELRRTAVTQGPDIEFVNKLFKQSLFDVETPKGHFSGLGLYGKWI FT LLPKHAQPDDVLKIEGASFDILDCVDIENKQGSLELTAVKVDRPVDFRDIRKYLPEHFT FT REKDCFLAVDNEYYPRMFCPVGTVSLFGFLNLSHKPTYNTCTYPYPTRTGQCGGVICKA FT GKIIAMHIGGDGSNGYGAILTKRIIGVLEQGSMVGLQKSSVSINMNTKTSLHPSVFHDV FT FPGEKEPAALSPRDPRLEVDLEAALFSKYKGNVFVDVPEGKPLPENIQIAADHYLEQIK FT PLMPANLTEPLSLEEVVYGIDKLDGLDLATSAGYPYCTKGIRKKDLIPPQGEPLTKLQD FT ALDLHGFDLPFTTYIKDELRPKLKVKAGKSRLIECSSLNDTIRMKRTFGRLFQVFHSNP FT GTVTGSAVGCNPDTDWSKFYTELGCQPLIAFDYSNFDASLHPIWFTALSYILAQLGYSS FT KDLDAIGHITYSTHLFKDKVYNVIGGMPSGCSGTSVFNSIINNVILRTVILDVYKHIDL FT DLFRMIAYGDDVVAVYPYQLDAKELAKAGSAYGLQMTPPDKDSEFSDTNWDNVTFLKRR FT FVPDEEFPFLVHPVFPMKEVFESIRWTRSASSTQDHVHSLCLLAWHNGEKEYNDFISKI FT RSVPVGRCLKLPAYSVLRKAWLDSF" FT mat_peptide 241..450 FT /product="L" FT mat_peptide 451..645 FT /product="VP4" FT mat_peptide 646..1374 FT /product="VP2" FT mat_peptide 1375..2052 FT /product="VP3" FT mat_peptide 2053..2973 FT /product="VP1" FT mat_peptide 2974..3630 FT /product="2A" FT mat_peptide 3631..3978 FT /product="2B" FT mat_peptide 3979..4974 FT /product="2C" FT mat_peptide 4975..5334 FT /product="3A" FT mat_peptide 5335..5403 FT /product="3B" FT mat_peptide 5404..5952 FT /product="3C" FT mat_peptide 5953..7353 FT /product="3D" FT 3'UTR 7357..7543 XX SQ Sequence 7543 BP; 1965 A; 1653 C; 1739 G; 2186 T; 0 other; ggtgtccggg tgtgtgggat agacccagat gtgcagtgga tgcgagcatt tgagtcagag 60 taggagcaag cccaggggca aagggaccac attgtgtatc ccgaatgaag gatcgagatt 120 tctctcctca ttacccggtg tcttgtcact gttggggggg cccaacagtc ttagtcctat 180 actgcctgat agggtcgcgg ctggccggac tcaagtgcta tagtcagttg attttcactc 240 atggcttttc tcttttcttg caacaaaacc gaaactaaga ccgctgtcac cagcaaacca 300 agacattata cccactggtc gcaagggcca gtgtgttccc acgtccatga cgtgtgtgtc 360 cttgatcatc aaggaaaagt aagcttctcc ctaccccacg caatacagat ttcctcaaac 420 cgtctacatc gaaggaggtt tgtaaggtgt ggtgctgcag cctcacgcgc agacaacaag 480 gttcaaaaag accagactgc gagtgctggt agggacattt accaaattaa ctattatggt 540 gcagaatact catcagccca cccccaagct gcaacccaca tggaccctga gaaattcacc 600 aagccaattg cagatctagc cacgggtgtg ggtcccgccc tcgcctctcc cagtgttgaa 660 gaatgtggtt attcagacag gctcgcccaa ttgacagcag gcaactcaac aatcacaact 720 caagaggcag cctcggctgt tgttgcctac gaggtatggc cagaatatac ccctggtgtt 780 ggtgaatcta ttgaccgaca gtccgaaccc gggcctgctg tcgataggtt ctacacattg 840 gattcagttg agtggtcgaa ctcagtgaaa gggtggttca tcagtcttcc tggtgccttg 900 ggagacttgg gtgtgtttgg tcagaattgt gcataccatt tcctgatgag gtctggattt 960 tgtgtgcatg tccaaattaa tgcttcacaa tttcatcaag gcatgttgat ggtggccgct 1020 atacccgagg cacagtcatc atctggtgag cggtcacatg attttggaac tttaacggat 1080 gcagatttca gggatcatcc agttgcacag ctcacccttt tccctcacca gttgataaat 1140 ttaagaacaa ataattcggc tacacttgtc ttaccctatg tgaatgccag tccatctgag 1200 agtgccctaa cccatgatta ctggaccatc ttcattgtcc cggttgttcc tctttcgttt 1260 aactctggtg ctacccccac catacccatc actgtgtcca ttgcacccat gaaatcccag 1320 ttttcaggcc ttagagggag taagaagata ggggatgggt gggctacatt tcagggtatt 1380 ccaacctttt cccttccagg atcaggtgag tttgttacaa ccatcaggaa cgctgatttc 1440 ccagcccttc cagactttga ggaaacgccc cttcataaga ttccaggtga ggttaccaac 1500 ttgttggaag ttgcccaaat tgataccttt tgcacagtta gtaacaattc taatgttctt 1560 aatcttgatg ttactgccca gggagctggt gagaggattg cagcatggga tttgtctctg 1620 gattctaatt tcttgtcttc aacatacctc tctaaagtga ccaggtggtt ttcgaactac 1680 agaggctcat tgaacataac attcatgttc tgtggtagca agatggctac aggaaagtta 1740 cttctggcat acacaccgcc aggaggtgat gcacccacca gccgcagaga agcaatgctt 1800 gccacacaca tggtctggga tcttgggctg cagtctgcct gcacattcac cgtcccatgg 1860 atttctcaaa cagcttacag aatgggccac actgaaggta atgtcttgtc ttatagaggc 1920 tatgtcactg ttttctacca aactcacatt gtagtgcccc caggagcccc gtcaacatgt 1980 caaattgtgg tcttggcatc ggctgcctct gatttcgtgt gcagagcacc cacagattcg 2040 gcttattatc aggggttgaa gaaccaaatt gctgaggttg ttaatacctc gcttcagacc 2100 aaaccagtta cccttgatat cccagctgtg acgggaccct ctgtgcctga caatctttct 2160 gtgcaaactg gagatgcacc tgcgttgacg gccccagaaa caggggcttc tgcaaccacg 2220 gaagcatcta caacaatgga aaccagagac cttgctaccc gcttctcagc gagggaaacc 2280 caagttacaa atttcatgtc caaatatgct cttttcaaga aaggcacaat cagagcaggt 2340 tcatcccagc agtcatctat tcttaaagtt cctttgtggt tttcagatac tgattcaact 2400 cagaaggccg ttagggcaaa gtataggatg ttcacttata ttaggtgtgg ctttgatgtc 2460 aatgtggtga tttcactttc tgctgatggg aggtcaaaca accctgtgag accagcccct 2520 actgtgcaaa tgatttattg cccccctgga tgccccaccc caactgatgc gaaatcccca 2580 gagtggtacc tccctacaac tccttcagtg ttccagaaag cgggtgaaac aatatcgttg 2640 aggatcccgt atatgggtat ggcttcagca tatgcctcat tctatgatgg atatgccaac 2700 ttcagcccaa ctgcagcaca gtatggtcaa ttccctggaa attatattgg cacaatttgt 2760 atcaggtttg cccaggatga tgtgacagct gagtcctcag aagccatcgc atcctgtttt 2820 tgttatgcta gaccaaccaa tgtgagagct ttctgcccta ggcctattgt aaccctcaag 2880 gagagaacag tgctcggtga atcaagggga agagtgcttt gtgtgtcaga tgatgatccg 2940 tcaggaaccc attacctgaa gcagtgtgag gatggcacag aaaggaggat gattagcttt 3000 gggcttgggt catccaaacc aattgttact ggtagcaaga ttgccatcaa taaggcccct 3060 gaacatgtcc agcagttctt tgacctctgt taccttgcaa aacatcttga tggtactacc 3120 taccacattt ttcctctaaa ccctttcact gcccttatgc cagatcattt gtttaggtat 3180 tccatgtctt tcaagaagaa tcaagtggat gttgctgtca acatcccttt caaacttctc 3240 tggagagatg ccactatgga tcttgcttgt ttcagattgg ataaaccctt ctttgaggat 3300 tctatttgtg tctgtacaga ttgtgatagg aaaaacctgt ggactgtgtg tagatcttcc 3360 ctgttcaact ttgccatgtt ttgtggcgat gctgagcgtg ttggggacca gtttgtgtat 3420 gatagtgatg aagatcagat tgggcatatt caaagaaacc taattgaagt taaagcagtc 3480 attcagccag gacactgtgg ctccccttta atttgtgaac atggcatttg tggaatgtgc 3540 actgctggtg atggtgagac aggttcttgg tttactgaat tttatctagc agatgagatg 3600 tcatcaaatt ttcagggtcc agaggagcaa gggatcaagg attattgtgc agacattgca 3660 aaagagatgg gtgctgcttt ctcagcatca accatggacc agatggcagg cagatttaag 3720 aatgcaattg agggtgttgt ccttgataag gttaatgtta agtctttagt tgttaagaaa 3780 attattcagt tagttgttaa gcttattaca gttattacca tgatagccag gtctgagaag 3840 aaaattgaaa ctgctgctgg tttgggtgtg ctccttggca ttgatcttct ttccactgac 3900 ccctttgttt ggcttgagga acgtgtgatt gatatgcttg gattggataa gaagagacac 3960 aggtgtgcta ctcaacaagg tattgttgag tggattaagg atttcaatgc tgcctgcact 4020 gctgcaaagg gccttgagtg gctcggagag aagatctgga aatttattga ttggtttaag 4080 aagctagtca agaaggaaga accagaaagg aggaagttta ttcaaaggct tgaagaactt 4140 cctttgatga tggaacacat tgacaagttg atgcagggga gaggcaaata cccagaggat 4200 caaattaaga aagtgtgtga agcaatgatt gagctgaaga aattggctga tatttatggt 4260 gttgagagga atgctgctac agtccaaatt gtaaaatatc atactaaggc tctagacctt 4320 ctccagtctc tttcagcagg gcgcactgaa cctgttgctc ttctcattca tggctcccca 4380 ggaactggta agtcccttgc aactgagatc attggtaggg ctctttctga gcgcatgggt 4440 gcaaacagac catactccct tccccctgat cctaaacact ttgatggtta tgcacaacag 4500 ccagttgtta taatggatga tcttggccaa aacccagatg gtgaagattg taagttgttg 4560 tgccagatgg tttcctctac tgagttcata ccacctatgg cttctcttga agacaagggg 4620 atggctttca cttcctcctt cgttcttgct tcaactaacc tccaggaact taaaccacct 4680 acagtcactg aaccaaaggc catcaagcgc cgtttctttc ttgacttgca catttccctt 4740 cagaaggact ttgacaaaca aggcaaactt tctgccagct ctgccctaac ccagtgctcc 4800 tctcttcatt gtacaaattt taagaagtgt tgccccatga tttgtggtaa ggccatcctc 4860 ttggaagaca agactacagg tgttaggtat tgtgtggatg atgttgtgtc aatgcttgtg 4920 agagaacatg aatctaggaa gggatgtggc tctaaacttg atgctctttt ccagggaatg 4980 tcaaatgaag attgtaatac agttgagatg aaaccagttg atgagtggtt ggagtcagat 5040 catgataaat tgccccagca gttatttaca tatgaggaac ttagacagag aggtgagtcc 5100 atcccctgcc ctcagcttat tgcagatttg gtaagggccg ttcctacaca ggctgttttg 5160 gattatgtca aatcaaaagg ttggatggtg cctgccccag tggaaaagat tgtggtccag 5220 aaagcagctt atgactggat ttccatcata actgccacag ttacaataat gtctgcagta 5280 ggatcccttt taggttttat ctacataatg tatcaggtct ttgcttttcc ccagggcgct 5340 tattccggaa acccaactcc acaacccaag aaaccagagc tcaggagaac tgcagtaaca 5400 cagggccctg acattgaatt tgtaaacaag cttttcaaac agagtctttt tgatgtggaa 5460 acacccaagg gtcacttttc tggtcttggc ctttatggca agtggattct cctccccaaa 5520 catgcccagc ctgatgatgt tttgaaaatt gagggtgcgt cctttgatat tttagattgt 5580 gtagacatag agaataagca gggctcactt gagcttactg cggttaaggt agataggcca 5640 gtggatttta gagatattag aaaatacctc ccagaacatt ttaccagaga gaaggattgt 5700 ttccttgctg ttgataatga atattaccct agaatgtttt gtccagtagg tactgtttcc 5760 cttttcggtt tcttgaacct ttcccacaaa cccacctaca atacttgcac ttatccctac 5820 ccaaccagaa ccggacagtg tggaggtgtg atttgcaagg cagggaaaat catcgccatg 5880 cacattggtg gtgatgggag caatggttat ggagcaatcc ttaccaaaag aatcattgga 5940 gtgttagagc agggatccat ggttggtctt cagaaatctt ctgtttccat caacatgaat 6000 accaaaacct ccctccaccc cagtgttttc catgatgttt tccctggtga gaaagaacct 6060 gctgcactct cccccagaga tcctcggctt gaggttgatc ttgaggctgc ccttttctca 6120 aagtacaagg gcaatgtttt tgttgatgtt cccgaaggta aaccactccc cgagaatatt 6180 caaattgctg ctgatcatta tttggaacag attaaaccct tgatgccagc aaatctcaca 6240 gaacctctct ctcttgaaga ggttgtgtat ggtatagaca aattagatgg attagatttg 6300 gccacatcag caggataccc ttattgtact aagggtatta ggaagaagga tttgatccca 6360 cctcagggtg aacccttgac taaacttcaa gatgcccttg atcttcatgg ctttgatctt 6420 cccttcacaa cctacataaa agatgagctt cggccgaagc tcaaggtgaa ggcgggtaag 6480 tcccgcctca ttgagtgctc atccctgaat gatactatca ggatgaagag aacatttggt 6540 aggttgttcc aagttttcca ttctaatcca ggaacagtga ctggttctgc agtcggttgc 6600 aacccagaca ctgattggtc caagttttat actgagcttg ggtgccagcc cctcattgcc 6660 tttgactact ccaactttga tgcttcattg caccccattt ggtttactgc tctttcctat 6720 attcttgccc agttaggata tagctccaag gatttagatg caataggaca tattacttat 6780 agtacacatt tgtttaagga taaggtttac aatgtgattg gtgggatgcc ttctggatgc 6840 tcaggcacct ccgtttttaa tagtataatc aataatgtta tccttaggac tgttatttta 6900 gatgtttata agcatattga tttggatttg tttaggatga ttgcatatgg tgatgatgtt 6960 gttgcggttt atccgtacca gcttgatgca aaggaactgg caaaagcagg ctcagcatat 7020 ggacttcaga tgacaccacc agataaagat tctgaattca gtgatactaa ttgggacaat 7080 gtgacttttc tcaaaagaag gtttgtgcca gatgaggagt ttcctttcct tgtccaccct 7140 gttttcccaa tgaaggaggt gtttgagtcc atccgttgga ccagaagtgc ttcttccacc 7200 caggaccatg tccattccct gtgcttgctt gcttggcata atggagagaa ggaatataat 7260 gattttatta gtaagattag atcagtccca gtaggaagat gtcttaagtt gcctgcctat 7320 tctgtgctta gaaaggcatg gcttgatagt ttttaagtgg gcttaaccca ctgcgggctt 7380 aacccgcttt cctatctgtt tagttagata agttttagta tagattaaga tagatatatt 7440 aagatagctt ataagttagt aatagataag ataacaacag gttgtgaatc caatcagaat 7500 tcggccgccg gcctgttgtt tacattttat gtttgattgg tgc 7543 //