ID JQ814851; SV 1; linear; genomic RNA; STD; VRL; 8468 BP. XX AC JQ814851; XX DT 06-JUN-2012 (Rel. 113, Created) DT 12-JUL-2017 (Rel. 133, Last updated, Version 4) XX DE Miniopterus schreibersii picornavirus 1, complete genome. XX KW . XX OS mischivirus A1 OC Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; OC Picornavirales; Picornaviridae; Caphthovirinae; Mischivirus; Mischivirus A. XX RN [1] RP 1-8468 RX PUBMED; 22855479. RA Wu Z., Ren X., Yang L., Hu Y., Yang J., He G., Zhang J., Dong J., Sun L., RA Du J., Liu L., Xue Y., Wang J., Yang F., Zhang S., Jin Q.; RT "Virome analysis for identification of novel Mammalian viruses in bat RT species from chinese provinces"; RL J. Virol. 86(20):10999-11012(2012). XX RN [2] RP 1-8468 RX PUBMED; 26262818. RA Wu Z., Yang L., Ren X., He G., Zhang J., Yang J., Qian Z., Dong J., Sun L., RA Zhu Y., Du J., Yang F., Zhang S., Jin Q.; RT "Deciphering the bat virome catalog to better understand the ecological RT diversity of bat viruses and the bat origin of emerging infectious RT diseases"; RL ISME J 10(3):609-620(2016). XX RN [3] RP 1-8468 RA Wu Z., Yang L., Hu Y., Ren X., Yang F., Yang J., Jin Q.; RT ; RL Submitted (22-MAR-2012) to the INSDC. RL MOH Key Laboratory of Systems Biology of Pathogens, Institute of Pathogen RL Biology, Chinese Academy of Medical Sciences & Peking Union Medical RL College, No. 6 Rongjing East Street, Yizhuang, Beijing, Beijing 100176, RL China XX DR MD5; 4dd758c9b149421495425fdd81205a48. DR EuropePMC; PMC3457178; 22855479. DR EuropePMC; PMC4403396; 25631076. DR EuropePMC; PMC4635496; 26018961. DR EuropePMC; PMC4897857; 27267372. XX CC ##Assembly-Data-START## CC Assembly Method :: DNASTAR Lasergene v. 7.1.0 CC Sequencing Technology :: Sanger dideoxy sequencing; Illumina CC ##Assembly-Data-END## XX FH Key Location/Qualifiers FH FT source 1..8468 FT /organism="mischivirus A1" FT /host="Miniopterus schreibersii" FT /mol_type="genomic RNA" FT /country="China" FT /collection_date="Dec-2010" FT /db_xref="taxon:2870378" FT 5'UTR 1..1407 FT CDS 1408..8253 FT /codon_start=1 FT /product="polyprotein" FT /db_xref="GOA:I3VR62" FT /db_xref="InterPro:IPR000199" FT /db_xref="InterPro:IPR000605" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001676" FT /db_xref="InterPro:IPR004004" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="InterPro:IPR014759" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR029053" FT /db_xref="InterPro:IPR033703" FT /db_xref="UniProtKB/TrEMBL:I3VR62" FT /protein_id="AFK85007.1" FT /translation="MATNKGNTTCSCCLSCVFSAKSGSYSPKSSEDVSPPPVPPKTGKR FT LHLSSFGCGTTYELDKEFEERLTRPSRTGKVVSLVSFDIPKYNLKDEGGNSSKPSASGN FT NNEGTIVNNFYANNYYGSIDATGTAVGTGGGPESTLGSLISSAGSLAGTLLMDQETEET FT TNLSDRILTEKVSNSAINTQSAVGRLLAYSHHDSGNEPVSCSDASTKAQPGNERFYTLD FT LATWTTTQKSYDFITFTPAVRLAAMNNLYSSTQNVHFLEKCGWRVQVQCNTSQFHSGSL FT LVFMAPEFAKFHSDQAKYGKDFINWHTAGDEDWFATNTSETGVNSWYAHTKEQWTLYPH FT QILNCRTGTSVSIEVPYVGVCPTSHRPQHNGWTLVVAVLTPLQYTTGSATQIQITGSFC FT PINPVWNGLRHGAFTQQGPVPTSIRENQSMFLTTIPDRTTPSYGLCKGPSDYMPGEITD FT LVQIGQIPTFISNYSVTNDPPKPYFEILSTNISGDQVFKANVILTDRALLRTAAAATAL FT CFTQYSGSTIYRFMFAGSAMHKLKLLISYTPPGAGEPTQLDDAANGTYAVWDVGLNSTF FT EFTIPFISPSERRFTYNGNSTELDVDGWLTVYQLTPLTYPVGAPTSAKIVVSFAFGPDF FT SLHNPVVPMLNQGTTNAEAGEPDVQSPAADFTATDIPTPKLSQSNVTFFYDRSFYVGPI FT IPAPMSSRPNDGIIPENFVLLTPHFAKGLKQVLHRFTEGWRNFSRQAYGFLAACPFTYY FT KADLEVTIVPKQGMNNQVYNVHWFPSGAHFPTTYIPETNASLAYKGLLSTQPTASNHGF FT NPVSFTIPMTTPLSYMAIDYDGWNAFSDGTYGICPANNFGAIVVTAGPDSATNMRMSVF FT IRFKNLRAFVPRPYRMTLRTVNSKFRPCTTEGPPPENKRESVDQDPHILELDSYPASGE FT EEEDDFHDMEDHSDILLGGDVEENPGPGSLVEAALKDISEEITKLPEEESKGLKKTFKE FT IRDSASKLTKRLKPKKDREPKIEPEVECAFLAFLEAEDPIETMAKGWNAISEIQRLWAS FT VKRVLSDSSFWYDLLVMIIKYIISTMIWILNPTTSVTLGLAAMAALDFLSMKGLKTKIL FT DYLTPKLGPPPPIPDGLFSEPPSAFTKAKAFFGMKDETPLEDQAGDGFVKRAQDANHTF FT NFLKNLEWLTNLITKLFNWISSWFAKPEATKHEILDNKMKLFAAAVDEIQSYRSGESNT FT FPETSVALVKEVFTLASETGKTGLANLASKYMITRTNNTPRMEPVVVVLRGKPGTGKSV FT ASHILAQAVSKQMTGQQSVYSFPPDCDHLDGYTGQYAVVMDDLGQNPDGEDFSTFCQMV FT STTNYIPPMAHLEDKGRPFCSNVIIATTNLAAFAPVTVADPMAVERRIFLDLEVTPGVT FT CQINGKLDLEAALEPIGPAVGPFRQDCELLHTAGLCFTDRRTRQQYSLYEVFQMVEERI FT KVKASVKKNLMALVFEAPDDPPSFEDFLLQMNLATRERDIIIQEMRELKQGIQETKQLQ FT LEFYSLVLVVGGIAGLCYGAYKTTSAICEYLMPDTPPKEDEETQIERAPFLEPAQAQGA FT YDGKANKKPVVTKKLQLQGPGNPDFERHLACHAVVAIHFFPPNTQQPVSQSAILLFGRC FT FMVNSHTWNKDWTKFEIRGVEYTREECDWLDLYKEGISTDATVVQLPKGQMFKDNLSKF FT MTKDLPFPQKNTPVTCVNCSNGTLFYSGHIIRAPQTCEIIRGLSSSMFIYQAQTYPGYC FT GSAVVATVKGRKLILGMHSAGNSGTAGAIFVTQEDLRQVRDYFAKNSAPPPPEPLSDEG FT LLTELPDGPLIHVPRKTKLRKSPAFPIFQPSAGPAVLSKNDVRLNPEVDFDKQVFSKHS FT ANQKVYPEAFRRMARWYANEVFTHIGKDNGPLSLKDAIKGIDFLDAMDPTTSPGLPYSA FT AGIQRTDLVDFDTGEIISAALAVEYNNYVEGNYEEHTFQTFLKDEIRSEEKIKAGKTRI FT VDVPSLAHVIMGRVLLGRFCSKFQASPGTTLGSAIGCNPDTDWTKFAHELMERHWCYDI FT DYSNFDSTHGTGMFELLIECFFTKENGFSPAVAPYLRSLATSKHAWMDKRYLIEGGLPS FT GCSATSVLNTVMNNIIIRALLSLTYSNFHPEDVAVLAYGDDLLVASDFVLDFNRVRATA FT NEHTLYKLTTANKAPDFPETSTLLECQFLKRKFVLHSVRNFIWRPVMDTTNLQTMLSFY FT KPNTLSEKLLSVAQLAFHSGYHTYEQLFEPFRELQMKVPSWFVLEHEWEHNFD" FT mat_peptide 1408..1683 FT /product="L" FT mat_peptide 1684..1875 FT /product="VP4" FT mat_peptide 1876..2655 FT /product="hypothetical protein" FT mat_peptide 2653..3348 FT /product="VP3" FT mat_peptide 3349..4113 FT /product="VP1" FT mat_peptide 4114..4275 FT /product="2A" FT mat_peptide 4276..4860 FT /product="2B" FT mat_peptide 4861..5838 FT /product="2C" FT mat_peptide 5839..6138 FT /product="3A" FT mat_peptide 6139..6198 FT /product="3B" FT mat_peptide 6199..6849 FT /product="3C" FT mat_peptide 6850..8250 FT /product="3D" FT 3'UTR 8254..8468 XX SQ Sequence 8468 BP; 2255 A; 2185 C; 1832 G; 2196 T; 0 other; ttgaaagccg ggccgggggt ccccgccccc ggtccagccc tctggggttt ccgccccaga 60 ggtcgtaggg gacactagta tcagcttgtg ttcccggtta cccggctttc cccagttgct 120 ctgggttaac aaagcacgtg tggtgggcac gtaaacttca ccaaacaacc caatcctctt 180 ttcttcctct ttggcgcaaa catcgcgcct cctctactga agataccgac tcaaccggta 240 agatcaggat tgagggttgt caactgacct cacagttgaa aactaatgga catcgagttt 300 attagactca taggacatcc cggaacgggg ctaacgcgtt ggtagcgcag tgtagttccg 360 gcccgaatct taacaccaaa atgttccaaa actgaccaac ctttgtcatc acctgcttag 420 ggcgaattgt cgagacgtca ttgatgttcc ggcccaggat aacaacgaag tgttccaagg 480 tgatttactc cgccctttta acaacgcact tgggcgaact gcactggtgt actggtaatt 540 cctgtcttgg attgtgtagt ggatataaac tgtacccacg gttgaaaccc actactcacc 600 tcacagattg tgtttacctt tatatctttg tacgcggtaa gtgcggcgtt gagagcgcct 660 tgtaagttcc taagcattag ttggtcctcc ccgattatgt catcaatggg gttgtcggca 720 cgcggttaag cggttgtcga cccgttgctt ggtttaagca tgaggtggat tcccccgatt 780 atgtctaccc gttactatgg cgggcggtcg tttcagggtg tttctactga ggactgcacc 840 aagtctttat cttttattct cagatctccg gctgtttgac gcttgtagga cagcaggact 900 attttctctt aatctttttc tacccactag ggtcctatcc tagtggaggg agggtgccac 960 cccttctctc tttagagagt gcgcctggcg gtctttccgt ctctggaaaa aggagcacat 1020 ggcatgctac aattggcaca agaaaacaag ctttgcggat tctttctttg tactagagga 1080 agctgtagcg accctgtatg gcgagcggac tcccctctcg gcgacgagag cctctcgggc 1140 caaaagccaa gtgttaatag cacccataca ggcggcagta ccccactgcc ctttctcaac 1200 atacaatgac tgatgaacca ctgttggttt ttctgacacc tttgtagtag gattccaagg 1260 aatgtcctga aggtaccctg ttagcttacg cgcaggatct gatcaggagt ctctttacag 1320 tgctgtacac tgtgcaaggg attaaaaatt gtttgaggaa tccccgagat agtggtctat 1380 ctcttcctat tttgttttac agacacgatg gcgacaaaca agggtaatac aacttgctct 1440 tgctgtctgt cttgtgtgtt ttcagcaaaa tctggttctt actcaccaaa gtcttctgag 1500 gatgtttctc ctccacccgt cccccctaag actggcaaaa ggctacattt atcaagcttt 1560 ggctgtggta ctacctatga attggacaag gaatttgagg aaagactcac aagaccttct 1620 cgtaccggaa aggtggtttc tttggtgtca tttgacattc ccaagtacaa cctcaaggac 1680 gagggtggta attcttctaa accgtcagca tctggcaata acaatgaagg taccattgtc 1740 aacaacttct atgctaataa ctattatgga tccatcgacg caactggcac agccgttggc 1800 acaggcgggg gccctgagtc tactctgggt tccctcatta gttctgctgg ttctttggct 1860 ggaaccttac tgatggatca ggagactgaa gagacaacta acctctctga cagaatccta 1920 acagaaaaag tctctaactc ggccataaac acccagtcag ccgttggtcg attattggct 1980 tactcacatc atgactctgg aaatgaaccc gtttcttgct cagacgcctc cacaaaggcg 2040 caacctggca atgaacgctt ctacacactg gatttggcta catggaccac cacccagaaa 2100 agttatgatt tcatcacttt cacacccgca gtcagactag cagcaatgaa caacctttac 2160 tcttcaaccc aaaacgtcca ctttctcgag aaatgtggat ggagggtaca agtacagtgc 2220 aacacctccc aattccactc agggagtttg ttggttttca tggctccaga atttgcaaaa 2280 ttccactctg accaggctaa atacggcaag gattttatca attggcacac ggctggggac 2340 gaagattggt ttgcaaccaa cacttctgaa acaggtgtca actcctggta tgcccacacc 2400 aaggaacagt ggacacttta cccccaccaa attctgaact gccgtacagg cacctccgtt 2460 tccattgagg tgccatacgt tggggtttgt ccaacttcac acagacccca acacaatgga 2520 tggactcttg ttgttgcagt gctaaccccg ctacaatata ctactggttc agccacccaa 2580 attcaaatca caggtagctt ttgtcctatt aatccagtat ggaatggact tagacatggg 2640 gcctttacac aacaaggtcc cgtccctacc tcaatcagag aaaatcaaag catgtttctg 2700 acaacaatac ctgacaggac caccccgtct tacgggcttt gcaaagggcc ttcagattac 2760 atgcctggtg aaatcacgga tttggttcaa atcggtcaaa tacccacttt catctcaaat 2820 tattcagtga ctaatgatcc cccaaagcct tactttgaaa ttctctctac caacatctct 2880 ggtgaccaag ttttcaaagc caatgtcatt ctcactgata gagctcttct gcgcactgct 2940 gctgctgcta cagctctttg ctttactcag tattcaggct ctactatata cagattcatg 3000 tttgctggat ctgccatgca caagttaaag ctgctcatct cctacactcc ccctggtgct 3060 ggagaaccaa cacagcttga tgatgctgca aacggtactt atgccgtttg ggatgtgggc 3120 ttgaactcca cgttcgagtt tactatccct ttcatttcac catcagagag aagatttacc 3180 tacaatggta attctacaga acttgatgtt gatggatggc taactgttta ccagctaaca 3240 cctctgacct accctgttgg agctcccact tcagccaaaa ttgtggtttc ctttgctttt 3300 ggtcctgact ttagcctaca caatcctgtc gtcccaatgt taaatcaagg aaccacaaat 3360 gcggaggcag gtgagccaga cgtgcagagc cctgctgctg actttactgc caccgatatc 3420 cctaccccta aactctccca gtccaatgta actttcttct atgataggtc cttctatgta 3480 ggtccaataa tcccagcacc catgtcctcc cggccaaatg acgggattat cccagaaaac 3540 tttgtccttc ttactcccca ctttgcaaaa ggtctcaaac aggtcttgca tcgctttact 3600 gaaggatggc gaaacttttc gcgacaggca tacggttttc tcgctgcttg ccctttcacc 3660 tactacaagg cagatttgga agttacaatt gtgccaaaac aaggaatgaa caatcaggtt 3720 tacaatgtgc actggttccc ctctggtgct cactttccaa ctacatacat tcctgaaaca 3780 aatgcttcgc ttgcatacaa aggtctcctt tcaacacaac caaccgcatc taaccatggc 3840 ttcaaccccg tcagtttcac cataccaatg acaacaccct tgtcttacat ggcaattgac 3900 tacgatggct ggaatgcttt ctcagatgga acttatggta tttgccccgc aaacaacttc 3960 ggggcaattg ttgtgactgc tggtccagac agcgcaacaa acatgcgtat gtctgttttt 4020 attagattta aaaatctcag agcttttgtg cctcggccgt acagaatgac cttgagaact 4080 gtgaattcta aattcagacc atgcactaca gaaggaccac cacctgagaa taaaagggaa 4140 agtgttgacc aagaccctca catcctggag ctggactctt acccggcctc tggcgaagag 4200 gaagaagatg acttccatga tatggaagac cattcggata tccttctcgg cggagacgtt 4260 gaagagaacc caggcccagg atctttggtt gaggccgcac ttaaggatat ttcagaagaa 4320 atcacaaaac ttccagaaga agagtctaag ggactcaaga aaaccttcaa agaaattcgt 4380 gattcagctt caaaattgac caagagacta aaaccaaaga aagacagaga acctaagatt 4440 gaaccggagg tggaatgtgc cttcctcgca ttcctggagg cagaagatcc tattgaaacc 4500 atggcaaaag gctggaacgc aatctctgaa attcagaggt tgtgggctag cgtcaaaaga 4560 gtgctcagtg attcctcttt ctggtatgac ctgctggtaa tgatcattaa gtacattatc 4620 tcgaccatga tctggatcct taacccgact acttcagtaa cccttggact tgctgctatg 4680 gcagctctcg acttcctttc catgaaagga ctcaagacaa aaatccttga ttacttgact 4740 ccgaagcttg gacctccccc tcccattcct gacggccttt tctctgaacc cccttcagct 4800 ttcaccaagg caaaagcgtt cttcggaatg aaagacgaaa ctcctctcga ggatcaggct 4860 ggagacggct ttgtcaagag agcgcaggat gctaaccaca ctttcaattt cctgaagaac 4920 ctggaatggc ttaccaattt gatcaccaaa ttgttcaatt ggattagctc ctggttcgcg 4980 aaaccggaag caaccaaaca tgaaattctg gacaacaaaa tgaaactctt tgctgctgcg 5040 gttgatgaga ttcagtctta tcgatccggc gagagtaaca cattcccaga aacttcagtg 5100 gccctagtta aggaagtatt taccttagct agcgaaacag gaaaaacagg acttgcaaat 5160 ttggcctcaa aatatatgat cacaagaacc aataacacac caagaatgga acctgtcgtg 5220 gttgtcctca ggggcaaacc cggcacgggg aagtctgtag cttcccacat ccttgcacaa 5280 gctgtctcaa aacaaatgac tggacaacaa agtgtgtatt cctttcctcc agactgtgac 5340 cacctcgatg gatacactgg gcagtatgcc gtggtgatgg atgatctggg ccaaaaccca 5400 gatggagaag acttctccac attctgtcag atggtctcca cgaccaacta tataccacca 5460 atggcacact tggaagataa gggcagacct ttctgctcta atgtgatcat tgccactacc 5520 aacctagctg ccttcgcccc agtgaccgtg gctgacccca tggccgttga gcgcaggatt 5580 ttcctggatt tggaggtgac acctggagtg acttgccaga taaatggcaa actggacctc 5640 gaagctgctc tggagcccat tggaccggcc gtaggccctt tcagacaaga ctgtgagctt 5700 ttgcacacag caggactttg cttcactgac agacggacca gacaacagta ttctctctat 5760 gaggttttcc agatggttga agaacgcatc aaggttaagg cctcagtcaa gaaaaacttg 5820 atggctctgg tgtttgaggc tccagacgac cccccgtcgt ttgaagactt cttacttcaa 5880 atgaacttgg caacaaggga aagagacatc atcattcagg aaatgagaga actgaaacaa 5940 ggcattcagg agacaaagca gttacaactg gagttctaca gcttggtgct cgtcgtaggt 6000 ggcatagccg gcctatgtta cggtgcatac aagacaacat cagcaatctg tgagtattta 6060 atgcctgaca ctccaccaaa ggaggatgaa gaaacccaaa tcgaacgggc gcctttttta 6120 gagccagcgc aggcccaggg ggcctacgat ggaaaagcca acaaaaaacc cgtggttacc 6180 aagaaattgc aactgcaggg cccaggcaac cccgatttcg aaagacacct tgcttgtcac 6240 gccgttgtgg caatccattt cttccctcca aatacccaac aacccgtttc ccaatcagca 6300 atactactct ttggccgctg cttcatggtg aacagccata cctggaacaa ggactggaca 6360 aagtttgaaa tccgcggtgt tgaatacacc cgagaagagt gtgattggct tgacctatac 6420 aaggaaggca tctccacaga tgcaacagtt gtacagctac ctaaaggaca gatgtttaag 6480 gacaaccttt caaaattcat gactaaggac ttaccctttc cccagaagaa cacccctgtc 6540 acctgtgtga actgctcaaa cgggactctc ttttactctg gacacattat tcgggcacct 6600 caaacttgtg agatcattcg aggcctctcc tcctcaatgt tcatctacca ggcccagacc 6660 tacccaggtt actgtggctc ggcagtggtt gctactgtga agggaagaaa gttgatactc 6720 ggcatgcact ccgctggcaa cagtggaact gccggagcta tctttgtgac tcaggaggat 6780 cttagacagg tacgcgacta ctttgctaag aactctgccc cccctccacc tgaacctctt 6840 tctgatgaag gacttctcac tgaactcccc gatggacctc ttatccatgt acccagaaaa 6900 actaaactaa gaaaatcacc tgctttcccc atcttccaac cctcggctgg acccgctgtt 6960 ctttctaaga atgacgttcg gctcaaccca gaagtggact ttgacaaaca ggttttctcc 7020 aagcactctg ctaaccagaa agtgtaccct gaagccttcc gccggatggc acgttggtat 7080 gctaatgaag ttttcaccca catcggcaag gacaatggac cgctttcgct gaaagacgcg 7140 ataaagggaa ttgacttctt ggatgcaatg gacccaacaa cttcacctgg tttaccgtat 7200 tccgctgcag gaatacaaag aactgaccta gttgactttg acactggtga aataatctcc 7260 gcggcacttg ctgttgagta taataactat gttgaaggaa actatgagga acacactttt 7320 caaaccttct tgaaggacga aatcagatca gaagaaaaga tcaaagcagg aaaaactcgc 7380 attgtggacg tcccatcttt ggctcacgtc ataatgggaa gagttctgct gggtagattc 7440 tgctccaaat ttcaggcttc acctggaacg accctaggtt cggcaattgg atgtaaccct 7500 gacacggact ggaccaagtt tgctcacgag ttgatggaga ggcattggtg ttacgacatc 7560 gactactcaa atttcgactc cactcatgga actggcatgt ttgagcttct gattgagtgc 7620 tttttcacca aggaaaatgg attctctcct gctgtggctc cttacttgag atcccttgca 7680 acctctaaac acgcctggat ggataagcgt tacctcatcg agggaggcct tccttcaggg 7740 tgttctgcaa cttcagtctt gaacactgtg atgaataaca tcatcataag agccctactt 7800 tccttgactt attctaactt ccatcccgag gatgtagccg tgttagccta cggtgatgat 7860 ctccttgtgg cttcagactt tgtgcttgac ttcaaccgag ttcgcgcaac agctaacgag 7920 cacacgctct ataagctgac caccgcaaac aaggctccgg actttccaga gacttctact 7980 ctccttgaat gtcaatttct gaagaggaaa ttcgtcttgc acagcgtgcg caacttcatc 8040 tggcgccctg taatggacac gactaactta caaactatgc tttcattcta caagcctaac 8100 accctctctg aaaagcttct gagcgtagct caacttgcct ttcactctgg ctaccacact 8160 tacgaacagc tctttgagcc gtttcgtgag cttcaaatga aagtgccttc gtggttcgta 8220 ctcgaacacg agtgggaaca caacttcgac tgaggtggaa gttgttgtat ttgtaacagt 8280 taagcatttt tgcccatgtg cctgttcact aggatcggca acgcagtacc caggaagcca 8340 cctgggtgtc cacggcccga ccttttggta tggttcatga gaaactccct taccccacta 8400 gtagttagtt ttagtttagg tgtattagtt taagaattgg ctattccaaa acaatacaaa 8460 aaaaaaaa 8468 //