ID JQ807994; SV 1; linear; genomic RNA; STD; VRL; 8428 BP. XX AC JQ807994; XX DT 02-APR-2013 (Rel. 116, Created) DT 02-APR-2013 (Rel. 116, Last updated, Version 1) XX DE Garlic virus X isolate SW3, complete genome. XX KW . XX OS Garlic virus X OC Viruses; Riboviria; Tymovirales; Alphaflexiviridae; Allexivirus. XX RN [1] RP 1-8428 RA Wylie S.J., Jones M.G.K.; RT "Viruses of Garlic in Western Australia"; RL Unpublished. XX RN [2] RP 1-8428 RA Wylie S.J., Jones M.G.K.; RT ; RL Submitted (20-MAR-2012) to the INSDC. RL Plant Virus Group, WA State Agricultural Biotechnology Centre, Murdoch RL University, South Street, Perth, WA 6150, Australia XX DR MD5; 7dc102184434c0859b128d3e27dd6982. XX FH Key Location/Qualifiers FH FT source 1..8428 FT /organism="Garlic virus X" FT /host="garlic" FT /isolate="SW3" FT /mol_type="genomic RNA" FT /country="Australia" FT /collected_by="Stephen Wylie" FT /collection_date="Aug-2011" FT /db_xref="taxon:150284" FT 5'UTR 1..167 FT CDS 168..4802 FT /codon_start=1 FT /product="replicase" FT /note="RdRp" FT /db_xref="GOA:M4I095" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:M4I095" FT /protein_id="AFV61767.1" FT /translation="MTTVQKLLDQISDPNARAAYSQDCLSAAKNAATKAMTIAPYAVTQ FT TEALTLERIGITTSPFATTSHTHAADKIIENDCLEIIGRYLPKGSVTLIQLKRAKLHLL FT KRGPNTDVFQNYCHEPKDVLRFGLTNPHVCPVVNTSCAVISDTLHFMSSQQVWTLFKRN FT PQLQRLYGTLVLPIEALNKLPSLFPEIYKLEYYDNHFAYMPGGHGGGAYIHSYGTLKWL FT STAQIGTESNHLSIEKIETKGAHHIMLIQRRRPELPWPLPPLWVFHASDYVRLPEIFYP FT SEANVQRAYPHIFIKRLQLYCFSVKAVSLRDIFAKIRQVIPTEELSRFSTADLIRLANY FT LLFITGMQQTSDYQSPLMESLLGKLCLSIRARVREFFQNLMGKSSYAALLTVTDVRPVY FT FTTKPIRRPICGQPWFDEAEMESKPETPTITGYPNPSPDDLDLLAEFEQYERATTEEDC FT STSRTNVTSNRAQNTQQRAEHVTSEKLEHSNDEFHSQITKSQGENDHTRSTEQSRPTNT FT CENFADDEDMVDGHITDWTDSDSDHDDADSETHPETNLSQTIQDDMLPDVSDLPELESI FT ADEQGDAEDNEDSANDQADHCNTTHDTETDKPATTPVEVESSPKITSRVDLTPLDSDTV FT EILKLHGFTNYKPQHDGDFQIAPVFYNHQACQLPLYDGITNSVQSKFIEMAHALKRNCY FT NYTLDAKRATAFMSDVKNNLTGLVLPKLDRDLLTSWVALSENACRKVGLIVIHGAGGAG FT KSRALQEILRSNSIDTNEVNIIVPTINLAVDWKKKMPKIDPRRVMTFEKACEREGKSVV FT IMDDYGKLPAGYIDAYLAIKFNVEIVILTGDQRQSVFHNDRKDSQIALLTSNTAHFKRY FT CDYYLNATHRQPRRLANPIRVHAEREVGGAIKHSTLIPTHAMTLVPAFRSQSLLTDLGR FT QAMTYAGCQGLTLPHLTIVLDKDTPLCSDEVLYTALSRASETITFVNTYSSNKDFLDKL FT DSTPYLKTLISGVREDEQAGAEIPPPEPEVRDAPTKTHIPVANNNVQLESKIETMEDKD FT TRELWSGEEKTNLMQTQDPVIQLFPHQQAKDEALFKITINERIKLANPETNCKALKETL FT NTGNLLFEAYANFMNVPRETQPFDKRLWAHCRQLALRTYLSKPTSNLQQGAQRQDPDFP FT ENAIALFNKSQWVKKLEKVGCKFKAGQTISAFKQSTVLLTTTMALYLRKKRESHQPDNI FT FVMCEKTPEQFNSFVLTKWDFSRPNYTSDYTQYDQSQDSAFLNFELRKAKHFGLPDEIV FT DFYAFIKTHAKTFLGNLAVMRLSGEGPTFDANTECNIAYDALRFQLDSTVNACYAGDDL FT VRDKACDERPGWKYAEPLFSLKAKPLVTSKPDFCGWRLTKYGIVKSPVQLYQSLQLALR FT LGKVEEVKRSYAIDYLFAYRLGDQLYDIFDEDELAKHQLVTRTLIKKGMQPPSSGEHLP FT TFHVTSDRLIRDPKAIKVLSYESDRIIVPTDVIEDHFTSASRTDRDDMTAESNRRASGL FT CTPVNPRNSAGTLLTDMFPSIATL" FT CDS 4914..5618 FT /codon_start=1 FT /product="TGB1 protein" FT /note="triple gene block 1" FT /db_xref="GOA:M4HZZ5" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:M4HZZ5" FT /protein_id="AFV61768.1" FT /translation="MKTQLLIQLLNNFGFHRTAEPIKEPLIVHGVPGCGKSTLIKTLIT FT HQSVAAYTLGVPYGKTLAHPGVLNPPTLEDILDFETRILDEYQLGAKEDFKTFNILFGD FT PFQGDTHLPAHFIKSLSHRVPRQICQFLNSLQYEIQGEKEGVLNHLPVFKANSTGPKGV FT VLHLGPISCQLTRTYRVASKTPAEVQGLEFKEVTLVYHSSELIANPNAFFIAATRACDC FT LNLITDKVPHDS" FT CDS 5615..5935 FT /codon_start=1 FT /product="TGB2 protein" FT /note="triple gene block 2" FT /db_xref="GOA:M4I046" FT /db_xref="InterPro:IPR001896" FT /db_xref="UniProtKB/TrEMBL:M4I046" FT /protein_id="AFV61769.1" FT /translation="MSFTPPPDHSKSFLALAAGAAAGLLIFTLRSNQLAPVGDNTHQLP FT HGGQYRDGNKFVNYNGPNTGASSHSIWWPAIAAITLTVVIHFLSSTRRRICLRCTESTL FT PH" FT CDS 6037..7107 FT /codon_start=1 FT /product="40 kDa protein" FT /db_xref="InterPro:IPR008398" FT /db_xref="UniProtKB/TrEMBL:M4HZU6" FT /protein_id="AFV61770.1" FT /translation="MTHATAWHLYETQNYIVDHINMILSQIALRVSDTRGAATQQQQFL FT DHKIREIVPALDAITTSISARTQNNAQNIQNRRASDQSTELRQSTINRTFFTNLNAALD FT TTSNLINHVPPTRYALPSVSLPLDELYGLLHALHKNSLEWLTHISHDTEQIINKLNNIE FT TILLDEVRTNSRKIDTVLGKLVDVETHLGKIADSNFERELAKSLASIETQVQELHAKFR FT DMNHQGSSTLGGSPSTSSIPETSVINSLLPTFNPEHPTARCRAYGSVEFGGAVLQIPMD FT VRGRRASTALRLSVMYTPKREETTVKYKLFDDGALLFTEELSTQHKFMQPFSDSLALLH FT SKCPNFLYKIRDEVLC" FT CDS 7152..7883 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:M4HZS1" FT /db_xref="InterPro:IPR000052" FT /db_xref="UniProtKB/TrEMBL:M4HZS1" FT /protein_id="AFV61771.1" FT /translation="MGDRNQGINTNQGLNAQVQGDGTSNQNQRPNRNPTPRPQADLNAQ FT NNVMPSENDLAAIASDVTSNSVATQEIIREILSTLQARRPNATPKDLFSLAWACYHNGS FT SRFTTMTTDAPCGMPHAELKDLVEDYCTLRQFCGYYAKTCYVTGKQQNKPPANWSRKGF FT QEESKFAAFDFFNAVMSDSSPTPPGGMRFKPTHEEIVGHSMNAKMSIIESRKTSNMVST FT RADLLAQQQIHEAPKPLMLTF" FT CDS 7894..8277 FT /codon_start=1 FT /product="nucleotide binding protein" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:M4I096" FT /protein_id="AFV61772.1" FT /translation="MHRYDFNLLACLHFSKPTLPNDVRIIIYNLTSNSRKLGRKAQQNK FT PFTGTSKCAARRRAKRYGRCFDCGALLEANHVCKLFTTRSNSDCLSVIHEGPAKLYAER FT SFRKSSFAEQLIRNDLQLMKLYK" FT 3'UTR 8278..8428 XX SQ Sequence 8428 BP; 2612 A; 2133 C; 1771 G; 1912 T; 0 other; aagtagggag atcagagtgg atatacagct aaacgaatgg atcaatagcg aagaatataa 60 tcatcgctga ggaaatcaaa caaccacaaa ctaaactaca cagaacaaac ctcaacacta 120 cttgataagg atacttagcg aagccctgaa catttagccc ttgaggtatg acaactgtgc 180 agaagttact cgatcaaatc tccgatccca acgctagagc ggcttattca caagactgtc 240 tttctgctgc caaaaatgcg gcaacgaaag cgatgactat tgccccctac gcagtcacac 300 agactgaagc gcttactttg gagcgcattg ggatcaccac ttcacctttt gccacgactt 360 cccacactca tgctgccgat aaaattattg aaaatgattg cttagaaatt atcggtagat 420 acctgccaaa ggggtccgtc acacttatac aactcaaacg ggccaagtta cacttactga 480 aaagaggacc taacacagac gtcttccaga actattgtca tgagcctaaa gacgtactca 540 gatttgggct aacaaacccc catgtatgcc ccgtggtgaa caccagctgt gcggtaatat 600 ctgacacact ccattttatg tcgtcacaac aagtatggac actgtttaag cgcaacccac 660 aactacaaag attgtatggt actctagtgc tgccgattga agcactcaat aaactaccca 720 gcctattccc tgaaatttac aaattagagt actatgacaa tcacttcgcg tatatgcccg 780 gtggtcatgg aggcggagcc tatattcact cttatggcac acttaaatgg ctcagcacag 840 cacaaatagg tacggagagc aaccacctta gcatcgagaa gattgaaacc aaaggtgcac 900 accacataat gctgatacag cggaggagac cagaattacc atggccacta ccgccactct 960 gggttttcca cgcttctgac tatgtgagac tacctgaaat attctacccc agtgaagcca 1020 acgtgcagag agcatacccc catatattca tcaaacgtct ccagctgtac tgtttctccg 1080 tgaaagcagt gtcacttcgc gacatctttg cgaagattcg ccaagtgatc cccacagagg 1140 aattgtcgag attttcaacg gcagacttaa tacgactagc aaactacctg ctctttataa 1200 cgggcatgca acaaaccagc gactatcagt cgccgttaat ggagagctta cttggaaaac 1260 tatgcttatc catccgtgcc agagttcgcg agttcttcca gaacctgatg ggcaaatcct 1320 catacgccgc actgctcact gttacggacg tgagaccagt ctactttact accaaaccca 1380 tcaggaggcc aatatgcgga caaccgtggt ttgatgaagc ggagatggag agtaagccag 1440 aaacacccac aatcacgggc tacccgaatc catcaccaga tgacctagac ctgctcgccg 1500 aatttgaaca atatgagcga gcaacaacag aggaagactg ctccacttca agaacgaatg 1560 tcacatcaaa ccgcgctcaa aatactcaac aacgcgcgga acacgtgaca tctgagaagc 1620 tggagcacag taatgacgaa tttcattcgc aaatcacaaa gtcgcaggga gaaaatgatc 1680 acacacggtc aacggaacaa tcgcgaccca ctaacacatg cgaaaatttc gcggatgatg 1740 aggacatggt ggatgggcac atcacagact ggactgatag tgacagtgac catgacgacg 1800 cggacagtga gacacaccct gaaactaacc tttctcaaac aatccaagac gatatgctac 1860 ctgacgtgag cgacttgccc gagttggaaa gcattgcaga tgaacagggt gatgcagaag 1920 ataacgaaga ctccgcaaac gaccaagcgg accattgcaa cacaactcac gacactgaaa 1980 ctgacaaacc agctaccaca cccgtggaag tggagtcatc accaaagatc acttcacgag 2040 tggacttgac acccctcgat agtgacactg ttgagatact caagctacat ggatttacca 2100 actataaacc acaacatgat ggcgatttcc aaatagcccc agtgttctat aatcatcaag 2160 cgtgtcagct acctttgtac gacggaatca cgaattctgt ccaatcaaaa tttatagaga 2220 tggcgcacgc gttgaagaga aattgctaca actacacatt ggacgcaaag cgagcaacgg 2280 ctttcatgtc ggacgttaag aacaatctga ctggcttagt actgccaaag ttggaccgag 2340 atttgctgac atcatgggta gccttgtctg agaatgcgtg taggaaagtg ggtctcatag 2400 taatccatgg agcgggtgga gccgggaaaa gtagagcgtt gcaagagata ctgagaagca 2460 actcaattga cactaacgag gtcaacatca tagtgccgac aatcaatctc gctgtcgact 2520 ggaaaaagaa aatgccaaaa attgatccac gccgcgtgat gacgtttgag aaggcatgcg 2580 aacgtgaggg caaatcagtc gttataatgg atgattatgg caaactacca gctggatata 2640 ttgatgcata tctcgcaatc aaattcaatg tagaaatagt catccttact ggcgaccaga 2700 ggcagtctgt tttccataat gataggaaag attcgcaaat tgccttgctg acgtccaaca 2760 ctgctcattt caagagatac tgcgactatt acctcaatgc tacgcacaga caaccgcgaa 2820 gactagctaa cccgattaga gtgcacgcag agagagaagt gggaggagcc atcaaacatt 2880 ccacgcttat ccccacacac gccatgacac tcgtcccagc ctttcgaagc caatcacttc 2940 ttacagattt gggcagacaa gcgatgacgt atgccggatg ccaggggctt actttaccac 3000 acctcacaat agttttagat aaagacacac ccctttgctc tgatgaagtg ttgtacactg 3060 ccttgtcaag agcttcagaa acaatcacct ttgtcaacac atactcgagc aacaaggatt 3120 tccttgacaa gttagattcc accccatacc tcaaaacact aatctccgga gtgagagaag 3180 atgaacaagc gggggcggaa attccaccac cagagccaga ggtacgagac gccccaacaa 3240 agacacatat cccagtggct aataacaatg tgcagctcga gagtaaaata gaaactatgg 3300 aagacaagga cactagggag ttgtggagtg gggaagagaa aacaaatctc atgcaaacac 3360 aagaccccgt aatccagctg tttccccacc agcaggccaa agatgaagcg ctctttaaaa 3420 tcacaataaa tgagagaatt aaattggcga atcctgagac aaactgcaaa gctctcaaag 3480 aaaccctcaa cactggaaac ttgctgtttg aggcttacgc caatttcatg aatgtgccgc 3540 gggaaactca accattcgac aaaagacttt gggctcactg tagacaactt gctctacgca 3600 catatctctc aaaaccaacg tcaaacttgc aacaaggagc gcagcggcag gatccagact 3660 ttcccgagaa cgcaattgcg ctgttcaata agtcacagtg ggttaagaaa cttgaaaagg 3720 ttggatgcaa atttaaggcc gggcaaacta tatcagcctt caaacagtca actgtcctac 3780 tcacaaccac catggctctg tacttgagga agaagcgaga aagtcaccaa cctgacaata 3840 tctttgtgat gtgcgaaaag acgccagagc aattcaattc gttcgttctc accaaatggg 3900 atttctcaag gccgaactac acatccgact acacgcagta cgaccaatcg caagactcag 3960 cgttcctcaa tttcgaatta aggaaagcta aacactttgg tctaccagac gaaatcgtag 4020 acttttacgc attcatcaag acacatgcca aaacattcct ggggaaccta gcggttatga 4080 ggctcagtgg cgaagggcct acttttgacg cgaacacaga atgcaatata gcgtacgacg 4140 ccctcaggtt tcagcttgat tcaacagtga atgcctgcta cgctggggat gacttggtgc 4200 gtgataaagc atgcgacgag cgtccggggt ggaagtatgc agaaccacta ttttcattaa 4260 aagcgaaacc tctagtgact agtaagccag acttttgcgg atggcggttg accaagtatg 4320 gaattgttaa atctccagta cagttgtatc aatcattgca actagcacta cgacttggca 4380 aggttgagga agtcaagcga agctatgcca tagactacct gtttgcgtat cgacttggag 4440 accagcttta cgacatattt gacgaggacg aattagcgaa acaccagctg gtcacaagga 4500 ccttgatcaa gaaaggcatg cagccaccca gttcaggaga gcatttacca actttccatg 4560 tgacatcaga ccggctcata cgagacccga aagcaattaa agtgttgagt tatgaatcag 4620 atagaatcat agtccccact gacgttattg aagatcactt cacatcagcc agcagaacgg 4680 atcgcgacga catgacggct gaaagtaata gacgggcttc cggactgtgc actccggtca 4740 accccagaaa tagtgccggc actctgttga cggacatgtt ccctagtatt gccacacttt 4800 aacttattcg acaattagta ctaacattaa ataggttaac ttactgatag tacagtcaac 4860 ttacactacg aatagtagcg tgctgattag ttatgtttaa ctttgtgtgt gaaatgaaaa 4920 ctcagctgct gatacaattg ttaaataact tcgggttcca ccgcaccgca gagccaatta 4980 aagaacctct aattgtacac ggggtgccag gctgtggtaa atcgacactt ataaagactc 5040 tgatcaccca ccaatccgtg gcagcctata ctttaggagt tccgtacggg aagacacttg 5100 cacaccccgg cgtactgaat ccgcccaccc ttgaagacat tctagatttc gaaaccagaa 5160 tcttggacga ataccagcta ggtgccaaag aagacttcaa aaccttcaat atattgtttg 5220 gcgatccttt ccagggtgac acacatttac ctgcgcattt catcaaatct ttatctcaca 5280 gagtgccacg acagatttgc caattcctaa attccttaca gtacgagata cagggtgaaa 5340 aagagggggt actcaaccat ttacctgtct tcaaggccaa tagtacggga cccaaaggag 5400 ttgttctaca tcttggcccc atttcttgcc agctcacacg cacatacaga gtagcgtcga 5460 aaactccggc tgaggtgcag gggcttgagt ttaaggaagt cacacttgtt tatcattcaa 5520 gcgaattaat agcaaatcca aacgctttct ttattgcggc tacacgggcg tgtgattgct 5580 taaacctcat aactgacaag gttccacacg attcatgagc ttcactcccc cgccagatca 5640 tagcaaatca tttttagcat tagccgcagg ggcagccgcg ggtttgttaa tttttaccct 5700 ccgaagcaac cagttagcgc cagttggaga caacactcac cagctgccac acggaggcca 5760 ataccgagac ggcaacaaat tcgtgaacta caacggtccc aacactggcg cctcttcaca 5820 cagtatctgg tggccagcaa tcgccgcaat cacactcact gttgtcatac atttccttag 5880 cagcactcgc cgccgcattt gtttacgctg tactgaatct actctacccc actaaaagtg 5940 ggtgtgtcat aactataact ggttcgaccg tacaagtctc tgaatgcccc ttagaacaag 6000 ttcctgaaat tgttaaagct tttgcctgga gcgcccatga cgcacgccac cgcctggcat 6060 ctttatgaaa cgcagaacta tattgttgat cacatcaaca tgatacttag tcagattgca 6120 cttagagtca gcgacacgcg tggtgcagcc acacaacagc agcaattcct ggaccataaa 6180 attagagaaa tagttccggc tcttgacgcg ataacgactt caatctctgc tagaacacaa 6240 aacaatgccc agaacattca gaacaggaga gcatctgatc aaagcactga acttcgccag 6300 agcacaatca acagaacatt cttcacaaat ttgaatgcag cgcttgacac caccagcaac 6360 ttgattaatc atgttccacc gaccagatac gctctgccgt ccgtttcact tcctttagat 6420 gaactgtacg ggttattgca tgcgcttcac aagaacagtc tggagtggct gacgcacatt 6480 agtcatgaca cggagcaaat aatcaacaaa ttgaacaaca ttgagaccat tttgctcgac 6540 gaagtgcgca ccaatagccg gaagattgat actgtccttg gaaaactagt agacgtggag 6600 actcacctgg gcaagatcgc agattcaaac ttcgaacgag agttggccaa gtctctagcc 6660 tccattgaga cgcaagttca agaactgcac gctaaatttc gagatatgaa tcatcaagga 6720 agctccacac ttggtggtag tccaagcaca tcatctatcc cggaaacatc ggtcattaac 6780 tctttattac caactttcaa tcctgaacat cccacagcta gatgccgggc atacggaagt 6840 gtagaattcg gcggcgccgt tctccagatc cctatggacg ttcgaggccg gcgtgcaagc 6900 accgcattac gtttgtccgt catgtacact ccaaaacgag aggagaccac cgttaaatac 6960 aagttattcg acgacggcgc actactcttc actgaagaac tgagcacaca gcacaaattt 7020 atgcaaccat tcagcgactc tttagctctc ctgcattcaa aatgtccaaa ttttctttat 7080 aagatcagag atgaagtact atgttaagtt ctaaattagg ccgaattagt tagaacgaac 7140 acaaacacac gatgggtgac cggaaccaag gaataaatac caaccaggga ctcaatgccc 7200 aagtgcaagg tgatggaaca agcaatcaaa atcaacgccc caataggaat ccaactcctc 7260 gaccccaagc tgacttaaac gcccagaaca atgtaatgcc ttccgaaaat gacttagcag 7320 cgatagcaag tgatgtaact tccaactcag tagccactca ggagattatc cgcgaaatcc 7380 tcagtaccct tcaagcaagg cgtcccaatg caacacccaa agacttattt tcgcttgcgt 7440 gggcatgcta ccacaatgga tcatcacgat tcacgacaat gaccactgac gcaccttgtg 7500 gcatgcctca cgcggagctc aaagacctcg tcgaagacta ctgtacgctg agacaattct 7560 gtggttacta cgccaaaaca tgctatgtca cgggcaagca gcaaaataag ccaccagcca 7620 actggtctcg aaaaggtttc caagaagaat caaaattcgc tgcctttgat ttctttaatg 7680 ctgtgatgag cgactcgtcc ccaacaccac ctggcggcat gcgatttaaa ccaacacatg 7740 aggagattgt gggacactcc atgaatgcga agatgtccat cattgagtcg cgtaaaacct 7800 cgaacatggt atccactcgc gctgatctgt tggcccaaca gcaaatccat gaagctccga 7860 aacctctcat gctcacattc taaattaaac taaatgcatc gctacgactt caacttgctc 7920 gcctgtcttc acttttcaaa accaacactt ccaaacgacg ttagaataat aatatataat 7980 ttaacttcca atagtaggaa attaggacgt aaagcacaac aaaataaacc tttcacaggg 8040 acttccaaat gtgccgcccg ccgcagagcg aaacgctatg gccgatgctt tgactgcggt 8100 gcactgctgg aagccaacca tgtatgtaaa ttatttacaa ctcgttccaa ttctgactgc 8160 ctgagcgtca ttcatgaagg acccgctaag ctatatgctg aaaggtcttt ccgtaaatca 8220 tctttcgctg agcagctcat tcggaatgac ttgcagttaa tgaaattata taaataggct 8280 ctgcccgagc ctcccactgg gtttacaggg ctctggacat ggacaaagac acccatgttt 8340 gttgatatta ctaaacttac tttgtaacaa catttgtcca cgtccagagc cctgtaaacc 8400 cagtgggagg ctcgggcaga gcctattt 8428 //