ID   JQ776552; SV 1; linear; genomic RNA; STD; VRL; 1688 BP.
XX
AC   JQ776552;
XX
DT   17-MAY-2012 (Rel. 112, Created)
DT   23-MAY-2012 (Rel. 112, Last updated, Version 2)
XX
DE   Otarine picobirnavirus isolate HKG-PF080915 segment 2, complete sequence.
XX
KW   .
XX
OS   Otarine picobirnavirus
OC   Viruses; Riboviria; Picobirnaviridae; Picobirnavirus;
OC   unclassified Picobirnavirus.
XX
RN   [1]
RP   1-1688
RX   PUBMED; 22570247.
RA   Woo P.C., Lau S.K., Bai R., Teng J.L., Lee P., Martelli P., Hui S.W.,
RA   Yuen K.Y.;
RT   "Complete genome sequence of a novel picobirnavirus, otarine
RT   picobirnavirus, discovered in california sea lions";
RL   J. Virol. 86(11):6377-6378(2012).
XX
RN   [2]
RP   1-1688
RA   Woo P.C.Y., Lau S.K.P., Bai R., Teng J.L.L., Lee P., Martelli P., Hui S.W.,
RA   Yuen K.Y.;
RT   ;
RL   Submitted (13-MAR-2012) to the INSDC.
RL   Microbiology, Hong Kong University, Pokflam Road, Hong Kong, Hong Kong 852,
RL   China
XX
DR   MD5; 2e5776850f31115a3fd525a838511ffb.
DR   EuropePMC; PMC3372223; 22570247.
DR   EuropePMC; PMC5841229; 29511159.
XX
CC   GenBank Accession Numbers JQ776551, JQ776552 represent sequences
CC   from the 2 segments of California sea lion picobirnavirus.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1688
FT                   /organism="Otarine picobirnavirus"
FT                   /segment="2"
FT                   /host="Zalophus californianus"
FT                   /strain="PF080915"
FT                   /isolate="HKG-PF080915"
FT                   /mol_type="genomic RNA"
FT                   /country="Hong Kong"
FT                   /collection_date="12-Sep-2008"
FT                   /db_xref="taxon:1187973"
FT   CDS             47..1645
FT                   /codon_start=1
FT                   /product="putative RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:I2DA78"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="UniProtKB/TrEMBL:I2DA78"
FT                   /protein_id="AFJ79071.1"
FT                   /translation="MPKNCETKFGKSFILPNQGLRSYFDIVRNGQPDVIRAPFAKKENP
FT                   QKVLKEWMIHLESLSDRWPTLVDYEKDLAKKVGPMSVMKPLDDRLTDIDHYYEDILLPS
FT                   KPIDDRAVKAAIAEFAGSRGLRVRDQKRTIDLMKKSTNSGSPYFTKRRRVVDSTYPCQV
FT                   YANTMTQVLTSGAEYDMAAVLGWRGQEGGPNPDDVKQRVVWMFPFAANIRELQVYQPLI
FT                   ESFQKNDLVPAWVSMDAVDQRITKMFDTKGDDDLVICTDFSKFDQHFNPDMQQCAKTIL
FT                   TAMLTPSQDSRTWLDHVFPVKYNIPLTYDYGKIRCGSHGMGSGSGGTNADETLVHRTLQ
FT                   YEAAQSVNQKLNPFSQCLGDDGVLTYPGIQVEDVVRAYSSHGQEMNTSKQYASKHDCTY
FT                   LRRWHHTGYRVDGVCVGVYSTCRALGRLMYQERFYDPEVWGPKMVALRQLSILENVKWH
FT                   PLRDQFAEFCMKRDKYRLGIDIPGFLVNIEQEAKEAIDLMPDFLGYTKSMQMGDSPRQT
FT                   GIEDWWIVNYLKSKQ"
XX
SQ   Sequence 1688 BP; 462 A; 389 C; 412 G; 425 T; 0 other;
     cgtaaatttt tatagtttac aaatattttg aaaggaggcc tatcacatgc ctaaaaattg        60
     tgaaactaag ttcggtaaaa gctttatttt acccaatcaa ggcttacggt cctattttga       120
     cattgtcaga aatggacagc ctgatgtaat cagagcaccc ttcgctaaga aggaaaatcc       180
     tcagaaagtc ctcaaagagt ggatgatcca tctggaatct ttgtctgaca gatggcctac       240
     tcttgtggac tatgaaaagg acctcgcaaa gaaggtcgga cctatgtcgg ttatgaagcc       300
     gctcgatgac agattaaccg acatcgatca ttactacgaa gacattctcc tgccttcgaa       360
     gcccatcgat gacagagcgg tcaaagctgc cattgctgag tttgcaggtt ctcgcggcct       420
     gcgtgtcaga gatcagaagc gtactatcga tctcatgaag aagtcgacta actctggctc       480
     tccctacttc actaagcgta gacgagtggt agatagtacc tacccctgtc aagtgtatgc       540
     taataccatg actcaagtcc ttactagtgg cgctgagtat gatatggctg cagtgcttgg       600
     ttggagaggc caggaaggtg gacccaatcc cgatgacgtt aagcagagag tggtttggat       660
     gtttccattc gcagccaaca ttcgggaact gcaagtgtac caacccttga tcgaatcttt       720
     ccagaagaac gatctcgtac ctgcttgggt tagcatggat gccgtcgacc agcggatcac       780
     taaaatgttt gataccaaag gcgatgacga cttggtcatt tgtacggatt tctcaaagtt       840
     tgaccagcac ttcaatcctg atatgcagca atgcgcaaaa accatcttaa ccgcaatgct       900
     gacacctagt caggatagcc gtacgtggct tgaccacgta ttccccgtga agtacaacat       960
     acctcttacg tacgactacg gcaaaatccg ttgcggtagt cacgggatgg gttccggttc      1020
     tggtggaacc aacgctgatg aaacactggt gcatcgtact ctccaatacg aagctgcaca      1080
     atcagtgaac cagaaattaa accccttctc ccagtgcctc ggtgatgatg gagtgctcac      1140
     atatcccggg attcaggttg aagatgtagt gcgcgcatac tctagccatg gacaggaaat      1200
     gaatacgtcc aagcagtatg caagcaaaca cgactgcaca tatttaaggc gctggcatca      1260
     tacaggctat cgcgtcgacg gcgtatgtgt aggggtatat tcgacgtgcc gggctctagg      1320
     ccgcctgatg taccaggagc gcttttatga ccctgaggtg tggggtccca agatggtagc      1380
     gttgcgacag ctttccatcc tagagaatgt gaagtggcat cctctacgtg accagttcgc      1440
     agaattttgc atgaaaaggg ataaatatcg ccttggtata gatatcccag gtttccttgt      1500
     caatatcgag caggaggcaa aggaagctat cgatctcatg ccggactttc tcggttacac      1560
     aaagtcaatg cagatgggcg atagtccccg tcagacaggt atcgaggatt ggtggatagt      1620
     taattatcta aagtctaagc aataaatcga gatggtgctt aaaccattgg acctattggt      1680
     ccaactgc                                                               1688
//