ID JQ776551; SV 1; linear; genomic RNA; STD; VRL; 2347 BP. XX AC JQ776551; XX DT 17-MAY-2012 (Rel. 112, Created) DT 23-MAY-2012 (Rel. 112, Last updated, Version 2) XX DE Otarine picobirnavirus isolate HKG-PF080915 segment 1, complete sequence. XX KW . XX OS Otarine picobirnavirus OC Viruses; Riboviria; Picobirnaviridae; Picobirnavirus; OC unclassified Picobirnavirus. XX RN [1] RP 1-2347 RX PUBMED; 22570247. RA Woo P.C., Lau S.K., Bai R., Teng J.L., Lee P., Martelli P., Hui S.W., RA Yuen K.Y.; RT "Complete genome sequence of a novel picobirnavirus, otarine RT picobirnavirus, discovered in california sea lions"; RL J. Virol. 86(11):6377-6378(2012). XX RN [2] RP 1-2347 RA Woo P.C.Y., Lau S.K.P., Bai R., Teng J.L.L., Lee P., Martelli P., Hui S.W., RA Yuen K.Y.; RT ; RL Submitted (13-MAR-2012) to the INSDC. RL Microbiology, Hong Kong University, Pokflam Road, Hong Kong, Hong Kong 852, RL China XX DR MD5; ef05345c487d0d8927297d01911df883. DR EuropePMC; PMC3372223; 22570247. DR EuropePMC; PMC5841229; 29511159. XX CC GenBank Accession Numbers JQ776551, JQ776552 represent sequences CC from the 2 segments of California sea lion picobirnavirus. XX FH Key Location/Qualifiers FH FT source 1..2347 FT /organism="Otarine picobirnavirus" FT /segment="1" FT /host="Zalophus californianus" FT /strain="PF080915" FT /isolate="HKG-PF080915" FT /mol_type="genomic RNA" FT /country="Hong Kong" FT /collection_date="12-Sep-2008" FT /db_xref="taxon:1187973" FT CDS 89..577 FT /codon_start=1 FT /product="hypothetical protein" FT /note="ORF1" FT /db_xref="UniProtKB/TrEMBL:I2DA76" FT /protein_id="AFJ79069.1" FT /translation="MTTNQINFFRTQNEKLAAERSAQQHERELNEIRRSNLAKEQEMRR FT SNMAKENLGFQQFNESLRHNKATESQASSQLREIERHNRASVGLGYSNLSEQHRHNVAS FT NSLGYANQFEQNRHDVAQELESQRHNTTTEQTSNFGTIGNVLLGVGGLFTKSNKKLKR" FT gene 592..2319 FT /gene="ORF2" FT CDS 592..2319 FT /codon_start=1 FT /gene="ORF2" FT /product="capsid protein" FT /db_xref="UniProtKB/TrEMBL:I2DA77" FT /protein_id="AFJ79070.1" FT /translation="MSKMSTKDRNNDSLNGGTNNNARQKSNNKRRGSKNPNRPSTRNHV FT GEDQHYTLANAPDAGNSIDWYNKSPVLLKDAANITMAHPVGLGMSLVMPQGTSGKVGTY FT SDPGIMALNFIPTIASGSSGTHASDINSATNIAARNIYSFVRHTNSGHANYDAPDLMKY FT LIAMDSIYMVYAHCARIYGVLRLYDGRNRYYPDQILRALGVANVTPQMGINEFRSALNR FT IAYKIGVMNVPNNLSYMQRHMWLCSNLYADEPGNTFQTYCFRPGGAYRYRFSTPKDPTG FT SLEMKVLPTMSLQSWLNTLEELMAPVLSSEDMAIMSGDLLKAYGESSMFKLTTVPEDYQ FT VLPTYNEEVLSQIENATIWYGIDNSVESADKDHHKWDIRENTTQDDANLGALYQNPTLL FT SPYGCQFDSVINLHTEEVNPENVMIATRLMTTAVSAKWMKTKEKLYTMTAMDYGSEIIV FT AAFMYTGLGSANIDDLNCYVDIFSDTTPAQAVSETAVSMIAAGYLQTFNRHPLVFVGTR FT TFKDPASTTTPSEPTIYTPAFMLGVSNMSTVDHRTLESMHNVAMLSMFDVSSNNLNRG" XX SQ Sequence 2347 BP; 716 A; 495 C; 509 G; 627 T; 0 other; caccacggcc agatatacaa tggctgtgta catgtgagta ctgtatgcac aataaccatt 60 cattctacta gaaaggagga tatctagtat gacaacaaac caaattaact tctttaggac 120 tcaaaacgag aagttggcgg ctgaaagatc agcacaacaa catgaacgtg agttgaatga 180 aattcgcaga tcaaacttag ctaaggagca ggaaatgcgt agatctaata tggctaagga 240 aaacctggga tttcagcaat tcaatgaatc actgcgacat aacaaagcaa ccgaaagtca 300 agcatctagt caactacgtg agatagagcg acacaataga gctagtgttg ggctaggtta 360 tagtaatctt agcgaacaac acagacataa cgtggcatct aactccctcg gttatgctaa 420 tcagtttgaa cagaacagac acgatgttgc gcaggaattg gagagccagc gccacaatac 480 gactactgaa caaacttcaa attttggtac tataggtaat gtgcttttag gtgttggtgg 540 tttattcact aagtctaaca agaagttgaa acgataattg gaggtattac aatgagtaaa 600 atgagtacaa aagacaggaa taatgacagt ctaaatggtg gtactaataa taatgcacgt 660 caaaaatcca acaataagag gcgtggatct aagaatccaa atcgcccttc cacccgtaac 720 catgttggtg aagatcagca ttacacttta gctaacgcac cagatgctgg caatagcatc 780 gattggtaca acaagtcacc tgtgttgctt aaagatgcag ctaatattac tatggcgcat 840 cccgtcggat taggcatgag tttggttatg ccacagggta catcaggtaa ggttggtacc 900 tattctgacc ctggtatcat ggctcttaac tttattccta caatcgcgtc tggatcatcc 960 gggacgcacg cttccgacat caactcagca acgaacatcg ctgctcgtaa catctatagc 1020 ttcgtacgtc acaccaactc tggacatgca aattatgatg ctccagatct gatgaaatat 1080 ttgatagcta tggattcaat ctatatggta tacgcgcact gcgctagaat ttacggtgta 1140 ttacgtctgt atgatggaag gaacagatat tacccagacc agattttgag agctcttggt 1200 gtagcgaatg ttacgcctca aatgggaatc aatgaattca gatcagctct caacagaatc 1260 gcatacaaaa tcggagttat gaatgttcca aataatttga gctatatgca gagacacatg 1320 tggctctgtt ccaacttgta tgctgatgaa cctggtaata ctttccagac ctactgcttt 1380 agaccaggag gtgcttacag atacagattc agcactccta aagaccctac tggatctctg 1440 gagatgaaag ttttgcctac aatgagcttg caatcttggc tcaacactct ggaagaacta 1500 atggcgccag tcctctcttc tgaagatatg gctattatga gtggtgatct tcttaaagct 1560 tatggcgaat ctagtatgtt taaattgaca acggtgcctg aagactacca ggtactaccc 1620 acttataatg aggaagtgct atctcagatc gaaaatgcta caatctggta tggcattgat 1680 aattcagttg aatctgcgga caaagatcat cacaagtggg atattcgcga gaacaccaca 1740 caggacgacg ctaatctggg tgctttgtat cagaatccaa cacttctgtc tccctatggt 1800 tgccagttcg atagtgtgat taacctacac actgaagaag ttaatccgga gaatgtcatg 1860 attgctactc gccttatgac tacagcggtc agtgctaaat ggatgaagac taaggagaaa 1920 ttgtatacaa tgacagctat ggactacggc tccgaaatca ttgtggctgc tttcatgtat 1980 actggtttgg gtagcgctaa cattgatgac cttaattgtt acgttgacat tttctcagat 2040 acaacaccag cccaggcagt atcggaaacc gctgtatcaa tgattgcggc ggggtacctg 2100 cagacgttca accgccatcc tttggttttt gttggtacga ggacctttaa agatcccgca 2160 tcaacaacta ctccatctga accgactatt tacactccag ctttcatgct aggagtctct 2220 aatatgtcca cggttgatca tcggactttg gaaagtatgc acaatgttgc tatgctgtcc 2280 atgtttgacg taagttctaa caatctcaat aggggatagt ctaccctggt ggcgcgtgcg 2340 cgtcacc 2347 //