ID   JQ773428; SV 1; linear; genomic RNA; STD; VRL; 1900 BP.
XX
AC   JQ773428;
XX
DT   19-SEP-2012 (Rel. 114, Created)
DT   19-SEP-2012 (Rel. 114, Last updated, Version 1)
XX
DE   Southern rice black-streaked dwarf virus isolate YN-MShi segment S9,
DE   complete sequence.
XX
KW   .
XX
OS   Southern rice black-streaked dwarf virus
OC   Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus.
XX
RN   [1]
RP   1-1900
RA   Hu X.D., Li F.;
RT   "Identification, characterization and distribution of of Southern rice
RT   black-streaked dwarf virus in Yunnan";
RL   Unpublished.
XX
RN   [2]
RP   1-1900
RA   Li F.;
RT   ;
RL   Submitted (13-MAR-2012) to the INSDC.
RL   Yunnan Agricultural University, Key Laboratory of Agricultural Biodiversity
RL   for Pest Management of Ministry of Education, Kuming, Yunnan 650201, China
XX
DR   MD5; 980271300a720e6cc9cbe344e1f40536.
DR   EuropePMC; PMC4379580; 25807053.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1900
FT                   /organism="Southern rice black-streaked dwarf virus"
FT                   /segment="S9"
FT                   /lab_host="rice"
FT                   /isolate="YN-MShi"
FT                   /mol_type="genomic RNA"
FT                   /country="China:Yunnan Mangshi"
FT                   /db_xref="taxon:519497"
FT   gene            53..1096
FT                   /locus_tag="SRBSDVs9_gp1"
FT   CDS             53..1096
FT                   /codon_start=1
FT                   /locus_tag="SRBSDVs9_gp1"
FT                   /product="P9-1"
FT                   /note="ORF9a"
FT                   /db_xref="InterPro:IPR009268"
FT                   /db_xref="UniProtKB/TrEMBL:J9UM65"
FT                   /protein_id="AFR68780.1"
FT                   /translation="MADLERRTFGSYKIEELTIRNDQPTRNTNLSLSQSTENRLSTKKI
FT                   PLLDDGIFELLNYLIDGTNFNKTCYCGFNYSHLPNLERDFNIASLYVRENFEICTDQLN
FT                   LANYVRQPNISIKSPDFTVCLEYVLKTVVESESSTKDQKDDESQKPTSTDSTKNEQEKK
FT                   FVEMSLLPLLNRESEESLTEEILEGEGAVVNVLKLFIKGFLMHLGENPNSYDRQLNVEK
FT                   YRPLLVSIVGYEYLVGTTVPEKKINHIYYQLATFDNYPFDLLRFQLSSLISTPTSILER
FT                   ITKEGLFKIITSSTLRGAPRQTVLFRGINGSESFLNIKRYRRFRTRIVGNADSVIKSDF
FT                   SSLKLDV"
FT   gene            1160..1789
FT                   /locus_tag="SRBSDVs9_gp2"
FT   CDS             1160..1789
FT                   /codon_start=1
FT                   /locus_tag="SRBSDVs9_gp2"
FT                   /product="P9-2"
FT                   /note="ORF9b"
FT                   /db_xref="GOA:F5A192"
FT                   /db_xref="InterPro:IPR009650"
FT                   /db_xref="UniProtKB/TrEMBL:F5A192"
FT                   /protein_id="AFR68781.1"
FT                   /translation="MNPQSSVNIDTYTFNCPFELAKIQIESAKPIMQDFSDFDEIFERP
FT                   LSDSELDDRVEKLELDIEAKVDPVVRRKYGKVGHIMLMIFSFLFFGIFKLTLKMFYHLF
FT                   RCVCCNPLIRGIFSVVCTVVFYIVIFTLIYLVYFFFGDQILAVYHSLTEMSDSGLINST
FT                   KIEEKVNNIIHEGSLFFGSVDPNTGHFQEVEKQVFNGGTVNYTLFH"
XX
SQ   Sequence 1900 BP; 590 A; 335 C; 322 G; 653 T; 0 other;
     aagtttttta agcctggaac tgacacattc ctgcaggaac gaacgcaaga gaatggcaga        60
     cctagagcgt agaacgtttg gatcatataa aatagaagaa ttgacaatta gaaacgacca       120
     accaacaaga aatacaaacc tttcactttc tcaatcgacc gagaatcgtc tttcaaccaa       180
     gaaaattccc ctactcgacg acggcatttt tgaacttttg aactacctca ttgatggaac       240
     caatttcaac aaaacgtgtt attgcggatt taattattct catctcccga atctagaacg       300
     tgactttaac atcgcttctt tgtatgtacg tgaaaatttc gaaatttgca cagatcaatt       360
     gaacctggct aactacgttc gacaaccgaa catcagcatt aaatctcctg acttcacagt       420
     ttgtttggaa tacgttttga aaactgtcgt tgaaagcgaa tcctcaacta aagaccaaaa       480
     agatgatgaa tcacagaaac ccacctccac tgattcaact aagaatgagc aagaaaagaa       540
     gtttgttgaa atgtctttgc ttcctctgtt aaaccgcgaa tctgaagaat ctttgactga       600
     agaaatttta gaaggtgaag gcgcagtggt aaacgtactt aaactattca ttaaaggatt       660
     tttgatgcat ttaggtgaga atccaaattc ttatgatcgt caactaaacg ttgaaaaata       720
     tcgtccatta ttggtttcta ttgttggcta tgaatatcta gttggtacta cagttcctga       780
     aaagaaaatc aatcacattt attatcaact tgcaactttt gataattacc cattcgatct       840
     tttaaggttt caactttctt cattaatttc cactccaact tcaatattgg aaagaataac       900
     aaaagaaggt ttgtttaaaa ttattacatc aagcactttg cgaggtgccc cacgtcaaac       960
     tgttttgttc agaggtatca acggtagtga gtcatttttg aacatcaaaa gatatcgtcg      1020
     ttttagaacc agaattgttg gtaatgctga tagcgttatt aagtccgact tttcttcact      1080
     taaattggac gtttgatact ttacttcttg gtcaatttca ttgtatatca atggttgaag      1140
     aatttttctt ttctacatta tgaacccaca gtcttcagtt aatattgata cgtatacctt      1200
     caactgtccc tttgaattag caaaaatcca aattgaatcc gcgaaaccaa ttatgcaaga      1260
     ttttagtgat tttgatgaaa tttttgaacg tcctttgtct gattcggaat tggatgatcg      1320
     agttgaaaaa ttggaattag atattgaagc caaagtcgat cctgtggtaa gaagaaaata      1380
     cggtaaagtt ggtcatataa tgttaatgat ttttagcttt cttttctttg ggatttttaa      1440
     attaacgctt aaaatgtttt atcatctttt tcggtgtgta tgttgtaatc ctttaattcg      1500
     aggaattttt agtgttgttt gtactgtagt tttctacata gtcattttta cgcttattta      1560
     tttagtttat tttttctttg gtgatcaaat ccttgctgta tatcattctt tgaccgagat      1620
     gagcgattct ggtttaatca actccaccaa aatcgaagaa aaggttaaca acatcattca      1680
     cgaaggttct ttattttttg gttccgttga tcctaatact ggccactttc aagaagtcga      1740
     aaaacaagtg ttcaatggag gtactgtaaa ttatactttg tttcactaag tttctatttt      1800
     atgtgactct gaaaatattc acgctcgtaa gtcgattttc ttgcagttgt gtatacgcta      1860
     cccaacaaat tcgttctcaa gccggcttac agctgatgtc                            1900
//