ID JQ773424; SV 1; linear; genomic RNA; STD; VRL; 3167 BP. XX AC JQ773424; XX DT 19-SEP-2012 (Rel. 114, Created) DT 19-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus isolate YN-MShi segment S5, DE complete sequence. XX KW . XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3167 RA Hu X.D., Li F.; RT "Identification, characterization and distribution of of Southern rice RT black-streaked dwarf virus in Yunnan"; RL Unpublished. XX RN [2] RP 1-3167 RA Li F.; RT ; RL Submitted (13-MAR-2012) to the INSDC. RL Yunnan Agricultural University, Key Laboratory of Agricultural Biodiversity RL for Pest Management of Ministry of Education, Kuming, Yunnan 650201, China XX DR MD5; 0cdc4fd5c1fe060616133d9ef6e31f98. XX FH Key Location/Qualifiers FH FT source 1..3167 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="S5" FT /lab_host="rice" FT /isolate="YN-MShi" FT /mol_type="genomic RNA" FT /country="China:Yunnan Mangshi" FT /db_xref="taxon:519497" FT gene 16..2835 FT /locus_tag="SRBSDVs5_gp1" FT CDS 16..2835 FT /codon_start=1 FT /locus_tag="SRBSDVs5_gp1" FT /product="P5" FT /note="ORF5" FT /db_xref="GOA:J9UM56" FT /db_xref="UniProtKB/TrEMBL:J9UM56" FT /protein_id="AFR68775.1" FT /translation="MTYLKVKMTTDPSEMSLKKVLFNPTNEIRILNHEQADNTLLTTLM FT IIHDFEDTHTRDSILPQIVNEEKAEFDRTIESILEEVSDAFVANYHKILEENAKLGNPL FT APNYKNVVSVETCIPGLEKLFVDRERWELFTRLYRLDRKMSQKYPLEKMLKGNFLNISI FT SDETYYEYVSAMIIVFEVFLCVITVNSVYGGLIFSALNLMSGGHNYIPILGLLLHAIVQ FT AVKIYLDKSVANQIEEKTTSYVDKVTNNDVKBVMIDDTMFIFVDKPKEPIFQNFDISLK FT VHTHKSSTFQPFKNGFNALLTKIIRIHKIKGEILKVGYIDGISRDELIGASGKKLSYSE FT RHAIGIKYDQETKTLFISHPILRDAFERLNKLSLLHDNLLLKDDFANIPSDFFTVDFNE FT PDSVSDYVVPFLNNADLKFSTQMSYNWRSINTEKRPYCFLKEGTSMNFYDPIFECFFPN FT HFIKIVKKDAITIDPTKVVTEDDMIHFARLVERHEDLTYNKTTAYSILKFLNENCHSCG FT CSEYFANFVSDYLTSIDVLNHMKDSKLSKVEYHLKQEYENLFKKTKRQELSKTPIAEHS FT DFLSQCAYNESFFDIDFCFLEDGDCHSLVIRFAKRKPYFRFKDEKLEKLNVLSLYDLVV FT NCNHGELSSSSRVGWNLVDIDNMGSDDNLNRTIRRTNSKPRHFTYDLMMITFTGSVTQY FT LIPEWLGESLTVYEEKHEGARLFEKSSLFSTLSCIQATFLANHILIECLEKSSNKLISF FT MDGVISAMSTSIEFSTFKNTMLNNLKRCTQASEMNVAKQSPIAGTSRNKSFRSYLRSSR FT PNHVYDALSYCISKKQNGLFTSEEMCMSYNLRSFGKVGVDYSNGELSYDISSREELYNN FT HPCALRLRNLGHFVFGKHFRCKVCRNNYGTSFELSLCQLGHQETAIEAVRSNTITSQIR FT AKLQPTTAR" XX SQ Sequence 3167 BP; 997 A; 635 C; 567 G; 967 T; 1 other; aagttttttt cactcatgac atatttgaaa gtgaagatga ccacagatcc ttccgaaatg 60 tctctgaaaa aagtgctttt caacccaacg aacgaaatcc gaattctcaa ccacgaacaa 120 gcagacaaca ctcttttgac cacactgatg attattcacg actttgaaga cacccacact 180 cgtgactcaa ttctgcccca aattgtcaat gaagaaaaag ccgaattcga ccgaactatt 240 gaatccattc ttgaagaagt tagcgatgcc tttgttgcta attatcacaa aattctcgaa 300 gaaaacgcga aattgggtaa ccctcttgct ccaaattaca aaaacgtcgt gtctgtagaa 360 acatgtattc caggtcttga aaaacttttt gttgatcgcg aaagatggga actgtttacc 420 cgtttgtatc ggctagatcg aaaaatgagt caaaaatatc ctctagagaa gatgctaaaa 480 ggcaatttcc ttaacatttc catttccgac gaaacttatt atgagtacgt ttccgctatg 540 atcatagttt ttgaagtgtt tctttgcgtt ataactgtca acagtgttta cggtggcttg 600 atctttagtg ctttgaactt gatgagcggc ggacataact acattcctat tcttggccta 660 cttttacacg ctattgttca agctgtaaaa atttatttgg ataaatcagt tgcgaatcaa 720 attgaagaaa agactacttc ctacgtagac aaagtgacaa acaacgacgt taaaracgtt 780 atgattgatg acaccatgtt tatttttgtt gataaaccga aagaaccaat attccaaaat 840 ttcgacatca gtctaaaagt tcatactcac aaatcatcta cttttcaacc ttttaaaaac 900 ggtttcaatg ctctcttaac taaaatcatt cgtattcaca aaatcaaagg tgaaattctc 960 aaagttggtt acattgatgg aatcagtcgt gacgaattga ttggcgcatc aggaaagaaa 1020 ctctcgtatt ctgaaagaca tgccattgga attaagtatg atcaggaaac caagacattg 1080 ttcatcagtc accccattct gcgagatgct tttgagcgtt tgaacaagct ttcgctattg 1140 catgataacc ttctgctgaa agacgacttc gctaacattc cgtctgattt tttcactgtt 1200 gattttaatg agccagattc tgtcagtgat tacgtagtcc ccttcttgaa taatgctgat 1260 ttgaagtttt ccactcaaat gtcttacaac tggagaagca ttaacacgga aaaaagacct 1320 tactgcttct tgaaagaagg aactagcatg aacttttacg atccaatttt tgaatgcttt 1380 tttccaaacc atttcatcaa aattgtcaaa aaagacgcaa ttaccattga tcctacgaaa 1440 gttgtaactg aagatgacat gatccatttt gcacggttgg ttgaaagaca tgaagatttg 1500 acgtacaaca agactactgc ttattccatc ttgaaatttt tgaatgaaaa ttgccacagt 1560 tgtggttgtt ctgaatattt cgccaatttc gtttctgatt acttaacatc aatcgacgtt 1620 cttaatcaca tgaaggattc aaaattatca aaggtcgaat atcatctcaa gcaggaatac 1680 gaaaacttgt tcaagaagac aaaaagacaa gagctttcaa aaacgccgat tgctgaacat 1740 tcagatttcc tctctcaatg cgcatataac gagtctttct tcgatatcga tttttgcttc 1800 ctggaagatg gtgactgtca ttcactcgtt attcgattcg ctaaacgcaa accttatttt 1860 cgcttcaaag acgaaaaatt ggaaaagctc aacgttctgt ccctgtacga tcttgttgtg 1920 aattgtaatc acggagaact ttcttcatct agcagagttg gatggaattt ggttgacatt 1980 gacaacatgg gatcagatga taacctcaat cgtaccattc gtcgtactaa cagcaaacca 2040 cgccatttta cttacgatct aatgatgatt accttcactg gctcagttac gcaatacctc 2100 atacctgaat ggcttggtga aagtttgacg gtttacgaag aaaaacatga aggcgctcgt 2160 ctttttgaaa aatctagctt gttttcaact ttaagctgca ttcaggcaac gtttttagca 2220 aatcacatac taatcgaatg tttagaaaaa agctcgaaca aactgatttc tttcatggat 2280 ggtgtgatca gtgccatgtc cactagcatc gaattctcga ctttcaaaaa taccatgctc 2340 aacaacttga aaaggtgtac acaggcttct gagatgaacg ttgcgaaaca gtctccgatc 2400 gcaggaacta gcagaaacaa gtcttttcgt tcctatttac gatcttctcg accaaaccat 2460 gtctatgacg cgttgtccta ttgtatctcc aagaaacaga acgggttgtt cacatcagaa 2520 gaaatgtgca tgtcttataa tctcagatca tttggaaaag tgggagttga ctatagcaac 2580 ggtgaattgt catatgatat ctcgtcaaga gaagagctgt acaacaatca tccctgtgcg 2640 cttcgactta gaaatctcgg acattttgtc tttggaaaac attttagatg caaagtatgt 2700 cgcaacaatt acggaactag ctttgaactt tccctgtgtc aattgggaca tcaagaaact 2760 gcaattgaag cagttcgatc caacacaatc actagtcaaa ttagagcaaa acttcaacca 2820 actacagcgc gatgataagc ttcattttaa ttgttgttat aattatccta ctttacacat 2880 attaaaccgt attttaaatg tttctaaaga cgtaattcca tttttatttg atcacaatca 2940 caacgctaac aataaaacga tgtctgactt atcttccacg cttaacaatt gtcgtgatat 3000 aaaagtttct gagagacatc acttacttag aactttactt ttcggaagca cgctaggagt 3060 tatacttcat gtttgagggt gtgttatccc tggctgcaag cgggaggcgc gtgaacaggt 3120 gttccacgtc ttcttagatg cgggggggag tgaatacagc tgatgtc 3167 //