ID JQ773422; SV 1; linear; genomic RNA; STD; VRL; 3618 BP. XX AC JQ773422; XX DT 19-SEP-2012 (Rel. 114, Created) DT 19-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus isolate YN-MShi segment S3, DE complete sequence. XX KW . XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-3618 RA Hu X.D., Li F.; RT "Identification, characterization and distribution of of Southern rice RT black-streaked dwarf virus in Yunnan"; RL Unpublished. XX RN [2] RP 1-3618 RA Li F.; RT ; RL Submitted (13-MAR-2012) to the INSDC. RL Yunnan Agricultural University, Key Laboratory of Agricultural Biodiversity RL for Pest Management of Ministry of Education, Kuming, Yunnan 650201, China XX DR MD5; 639cb03f784fe9c5461fcbe804c96c1b. XX FH Key Location/Qualifiers FH FT source 1..3618 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="S3" FT /lab_host="rice" FT /isolate="YN-MShi" FT /mol_type="genomic RNA" FT /country="China:Yunnan Mangshi" FT /db_xref="taxon:519497" FT gene 34..3543 FT /locus_tag="SRBSDVs3_gp1" FT CDS 34..3543 FT /codon_start=1 FT /locus_tag="SRBSDVs3_gp1" FT /product="P3" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:J9U6L4" FT /protein_id="AFR68773.1" FT /translation="MDPVQVIKYLLSQNYETKLQQLEQWQQQMQAAGFTTEYLHRSSNV FT LNIRRRIEESRRRLFEISAKLWQGSLFTKTISPNNLFLGFSECSGVNKSLFDSKNCDFG FT RFSLNFHCIPKYWILSGIFNDLVCYDHHNVKVTVSKSSNKISFRINDFIYIVPTISNFS FT FLSDNSDIKIDENCVFDVFVRIFQSLSDVVIDVCNFTFNDELLNVEWKNTIIRFAGDAN FT YFSVSSNLIFNSIDDYLGRKCTSMRNYFCYAISMNNLEMINDSLNNWESKQLSHKKNLV FT NSLHQMNLNSMIKISSLEKEVARVKTLKISLSYPRTICLHIPTHKIFINKYSHDLFSSV FT FKTQFVGWNFTYGERDRTVEPFICDVETKLKTNSSIVSMASTSHFQCNDFGSPDNMFLL FT NVLDKDGNVKKVICEAVFSLKYKEFKYLGVKSFDEKTGYQSQVYFFGLSEIRLYTENPK FT LQVLSLVSENEGKLCHVFYATTSLILSFKILAENIEYLGVASPQFTSEFSYNGKPLKLS FT GKLTLSEEFDGAQRRKCLTSEEFVLNEDVKCVFTSFICNGQRSATKTFYNNKPWPGIRS FT RYHDNDSYSSAIQATCHTLILNSPFRAYNNYSDILYSANNNVHYVEADGCFTERKNYLY FT WEVPISKFDMIYDDDPCVKLSNKSILTIPVTYRAFFEEVEGKFHPCLLSEVHYIDDYSV FT TQAGDAPELFLPFNKPVDIIYMEQSDGDEVSGELKIISFDVKDFNAYVLPENLNTTMNI FT VGRLLDYESELELVYQTNNVLSDMMNNFEKRLSDLEKFCAFLEKSYNKKSGDSSSLYHL FT LGDVFTFVGEICVLQFPILGFCFILTGIMVDSIGKITQEDIFDGISEIAFGGLLLCLGK FT RKPKFAYLQELGLDRRRASSNSYISDLASSIGRRRSYSSYHRYESINELSPSLSIKDRI FT FNQIRAHNPSVFDLHHNSGLILELKQRQKDNYSLLNSSYSRMKRSIGNVSHDDNLNYKL FT SCNNPESCELYELIVTTFDYYPILLNDNSFLIIKVQFKMRITSKPIMMKIEDIMFKYFH FT TSDSLGFNVFDESKYNDVKHLYDYFFRFSFDEIFNYLCVLSLLSKTSSFDNILVENFDK FT IYDTLYLTNHNSYIKNDAIHLRQVDSTIYKTMHGHSFSDQVPNESYFKMISTIVSHPEI FT LRF" XX SQ Sequence 3618 BP; 1193 A; 551 C; 599 G; 1275 T; 0 other; aagtttttat ccatgtcttt gaattgaaca gggatggatc cagtacaagt catcaaatac 60 cttttgtctc aaaattatga aaccaaatta caacaactcg aacaatggca acaacaaatg 120 caagcagcag gcttcacaac agaatactta caccggtctt cgaacgtgct aaacatcaga 180 cgcagaattg aagaatctag aagacgttta tttgaaatca gtgctaaact atggcaaggc 240 agtctattta ctaaaaccat ttctcctaat aatttatttc tcggcttcag tgaatgctca 300 ggagtgaaca aatcgctttt tgattctaaa aattgtgatt ttggaagatt cagtttaaac 360 tttcattgca tacctaaata ttggatatta tctggaatat ttaatgattt agtttgttat 420 gatcatcata atgtcaaagt cacagtaagc aaatcgtcaa ataaaatatc gtttagaata 480 aatgacttca tttacatagt tccaaccata agcaacttct catttttatc tgacaattca 540 gatatcaaaa ttgatgaaaa ctgcgtattt gacgtatttg tacgaatttt tcaatcatta 600 agcgatgttg ttatagacgt ttgtaatttc acatttaacg atgaattatt gaatgttgaa 660 tggaaaaaca caatcattcg ttttgccggt gatgctaact atttctcagt ttcttcaaac 720 ctcattttta atagtattga cgattactta ggtagaaaat gcacttcaat gagaaattat 780 ttttgttacg caattagtat gaataacctt gaaatgatca atgactcctt aaataattgg 840 gaatctaaac aattgtcaca taaaaagaat ttagtaaaca gtcttcatca aatgaatctt 900 aattcaatga ttaaaatttc ttctttggaa aaagaagttg cgagagttaa gacgttaaaa 960 atatccttaa gttatcctcg cacgatttgt ttgcatattc cgacgcataa gatttttatt 1020 aataagtatt ctcatgactt attttcttcg gtttttaaaa ctcaatttgt tggttggaat 1080 ttcacatatg gtgaaagaga tagaactgtt gaacctttca tttgtgatgt tgaaacaaaa 1140 cttaaaacga attcttctat agtaagtatg gcatcaactt ctcactttca atgtaatgat 1200 tttggcagtc ctgataacat gtttttgcta aatgttttag ataaagatgg taacgttaaa 1260 aaagtaattt gcgaagctgt gttttcatta aagtacaaag agtttaaata tctaggagtt 1320 aagtctttcg atgaaaaaac aggatatcaa agtcaagttt atttctttgg tttgagtgaa 1380 attaggcttt atactgaaaa tccaaagtta caggttcttt cattagtgag tgaaaatgaa 1440 ggtaaattat gtcatgtatt ttatgcaacc acttctttaa ttttatcttt caaaattctg 1500 gctgaaaata tcgaatattt aggagttgcg tctcctcaat tcacaagtga atttagttat 1560 aatggtaaac cattgaaact tagtgggaaa ttaactttaa gtgaggaatt cgatggagct 1620 caaaggagga aatgcttgac ttctgaagaa tttgttttaa acgaagatgt taaatgtgtg 1680 ttcacctcgt ttatatgcaa cggtcaacgt tcggcaacca aaacattcta taacaacaaa 1740 ccttggcctg gtattcgtag cagatatcac gataatgatt cttattcaag cgccattcag 1800 gcgacctgtc atactttaat cttaaattca cctttccgtg cttataataa ttatagtgat 1860 atattatact cagcgaataa taatgtacat tatgttgaag cggatggttg ttttactgag 1920 aggaaaaatt atctctattg ggaagttcca atttcaaagt tcgacatgat ctacgacgat 1980 gatccttgtg ttaagttgtc aaacaaaagc attctcacca ttccagtaac atatcgcgct 2040 ttctttgaag aagtggaagg taaatttcac ccttgtcttt tatctgaagt acattacata 2100 gatgattatt ctgttacgca agctggtgat gctccagaat tatttcttcc tttcaataaa 2160 ccagttgata ttatttacat ggaacagtct gacggggatg aagtcagtgg agagttaaaa 2220 attatatctt ttgatgtaaa agactttaac gcttatgttt tacccgaaaa tctaaacacc 2280 actatgaata ttgtaggaag gttgttagat tatgaatctg aattagagct agtataccag 2340 actaataatg tcttgtccga tatgatgaat aatttcgaaa aacgattatc tgacttagaa 2400 aaattttgcg ccttcctcga aaaaagttat aacaaaaaat cgggtgactc ttcttctttg 2460 tatcatttgt taggtgacgt tttcaccttt gttggtgaaa tttgtgttct tcaatttcct 2520 attttagggt tttgtttcat tttgactggt ataatggttg attctattgg aaaaattact 2580 caggaggata tattcgatgg gattagcgaa attgcgtttg gaggcttact actttgttta 2640 ggtaaaagga aacctaaatt tgcatatctt caagaacttg gtttagatag acgacgtgct 2700 tcctcgaatt cttacattag tgatcttgca tcttctatcg gacgtagaag aagttattct 2760 agttatcata ggtatgaaag cattaatgaa ttgagtcctt ctctttctat aaaagaccga 2820 atttttaatc aaattcgagc acataatcct agcgtgttcg acttgcatca taactcaggt 2880 ctcattttag aattaaagca aagacaaaaa gataattatt ctctcttaaa ctccagttat 2940 tcgcgtatga agagatctat tggtaatgtg tctcacgatg ataatctcaa ttataagtta 3000 tcatgtaata atccagaatc atgtgaattg tatgaactga tagtcactac ttttgattat 3060 tatccaattc tattaaatga taactctttc ttgatcatca aagtccagtt taaaatgaga 3120 attacttcca aacctattat gatgaaaatt gaagacatta tgttcaaata ttttcacact 3180 agtgattctc ttgggtttaa cgtttttgac gaaagtaaat ataatgatgt taagcatctt 3240 tatgattact tttttagatt tagttttgat gaaatattta attatttgtg tgtcttaagt 3300 ttattatcta aaacaagctc atttgataat atcctagttg agaatttcga taaaatttac 3360 gatacccttt atctcacgaa tcataattca tacataaaga acgatgctat tcatttacgt 3420 caagtcgact ctacgattta taaaaccatg catggacatt cattttcgga tcaagtacct 3480 aatgaaagtt attttaaaat gatttcaact atagtttctc atccagagat tttgagattt 3540 taaggcactt tggttagcac gcggctggtg aaatctacga actgttggaa ttcgacacac 3600 atgggtacag ctaacgtc 3618 //