ID JQ773420; SV 1; linear; genomic RNA; STD; VRL; 4500 BP. XX AC JQ773420; XX DT 19-SEP-2012 (Rel. 114, Created) DT 19-SEP-2012 (Rel. 114, Last updated, Version 1) XX DE Southern rice black-streaked dwarf virus isolate YN-MShi segment S1, DE complete sequence. XX KW . XX OS Southern rice black-streaked dwarf virus OC Viruses; Riboviria; Reoviridae; Spinareovirinae; Fijivirus. XX RN [1] RP 1-4500 RA Hu X.D., Li F.; RT "Identification, characterization and distribution of of Southern rice RT black-streaked dwarf virus in Yunnan"; RL Unpublished. XX RN [2] RP 1-4500 RA Li F.; RT ; RL Submitted (13-MAR-2012) to the INSDC. RL Yunnan Agricultural University, Key Laboratory of Agricultural Biodiversity RL for Pest Management of Ministry of Education, Kuming, Yunnan 650201, China XX DR MD5; 2b031fd210beea36401577473e11f150. XX FH Key Location/Qualifiers FH FT source 1..4500 FT /organism="Southern rice black-streaked dwarf virus" FT /segment="S1" FT /lab_host="rice" FT /isolate="YN-MShi" FT /mol_type="genomic RNA" FT /country="China:Yunnan Mangshi" FT /db_xref="taxon:519497" FT gene 37..4431 FT /locus_tag="SRBSDVs1_gp1" FT CDS 37..4431 FT /codon_start=1 FT /locus_tag="SRBSDVs1_gp1" FT /product="P1" FT /note="RNA-dependent RNA polymerase; ORF1" FT /db_xref="UniProtKB/TrEMBL:J9UKI2" FT /protein_id="AFR68771.1" FT /translation="MVERKFSRSAEICLKKFNSIQKFRQNKQQQKTNRDRTISQKEKKI FT KDRAPPPSKKEDIPTVSTPISIESQSNLDEQRTSYIHLLHQKDSILDAIIEDAENIRNV FT FIGEVPLTKEIIKNRLDDISTVLNNASDLILKLFESDNGILNECVIPNDVIQKDIYSIL FT HPSEIFDYNGFGIDEVNNLAISPKIRYLPNWNIQKIRSTIDLLKNDNSPLKPVKLAHDY FT GLISNNLKRKLLIGVDRMFNKLSIQHRFGTFESQIFSCFLMKQLLTEEQCYVNLPNCVL FT KSKFQKRGIDTVCWQYLRQIILHYNGFPFYHHTHSARFGVLDSTKISIHTDLPVSCVLP FT SVLHGLLNGIVSELLCDLNSETALIYAKHLMFCSQQSTYQRQLDFKDSFRSWPKLCYDS FT IGYVLAVLYSSDMKPLEQRIEHIDSEFWMDEKEKEILETSVSQLPDYVKKFVSSSIAHC FT TDLGNIVKSRMALNNNISLSRELTNDEVTSVRLLASKNTEFLRWLTMTSTIISNFGIYN FT KTSLLLEYEKSVGTKQDVMVSKPECKISIVTEQGMNIPLINDWSKVPILNEMSELFDQN FT WKSDLIKEFEHIDDFEKRFVTFLTNKSGGQKSEEPTLSKELKGISNARVIAFALNRNDY FT HDELKFIKMLMAYGKCAIRFQIDRRARVIVIVPNAIQSSELFLLLGFNVLKTNKKHNDK FT IAVGKQIGNLLDARVQMCNTGDVSSVKNSGDMKGMDAHTIPNLTLFLRNKMIEVLFELD FT PSKSCSNFFFSEDKEYTLKEKHPKFEEIYNRNLRGVVIHAAKCLFYMFSMNMYLEDHFF FT ADSQTVSDQTFQTGFFATSAQHTLFLSLFLLNLERKFFAKLDNKMISVMHSVMGDDVLE FT VIKNGVKFPDKVRSWLSLRKNDLAKLNYEEELSLSRMYGVFLQQAALLGVYVPYPSRMS FT LFCDERSDTTKRHTLDMIKIVMDVISAKAQRSYGIDNGLGIGYSIWSCHRSSRYIYSDF FT DKSKVSQLLEMDKTFDFNFIVSHDETEKSIRFIYPFVTVMCSPISWPMLTFVMNDISDP FT NKFITYKSKAFTSLNGDGAYMLINQMFFTSNEQHMFQFVDYVKHQSKIVELKLNSNFLN FT WEARHHWGFTFGEHLLRFKRLRHLTESRKNELGLGDIEVMVHNLNKYLDGNRVLLSFNS FT ISVLKAHKIEVPYGLMYANHNRSKIDQSLTVRTESLEERVYLDSIFLKHMLDYKTVPKD FT LEVLKTHALCSVRLRIYGDFDYACEKDGVIEPSSDAQFNIILPFLPGYHLNSAYGKLFL FT YSTLPTVHDRDISGTLGEITGSLGASFDVDAAIEFGAHVFNINPSLVDAAGTAIGIPQG FT LLNHYKNLVNAFVTNNFNLKYHSIFLNVKYFGLNGSLKHFSTFGDYSSRLVRFDLIHKL FT DRYHNVFVRDFIFAYIHELNGRRVYLDYSLHSLLLVMSRGSIKYFTSHLSQLFNPMLTL FT EFD" XX SQ Sequence 4500 BP; 1470 A; 673 C; 789 G; 1568 T; 0 other; aagttttttt cgccgaccta cgtatctcat agacaaatgg tggaacgaaa gttcagtaga 60 tctgcagaaa tttgcttaaa aaaattcaac tcaatccaaa aatttagaca aaacaagcaa 120 cagcaaaaaa ccaacagaga ccgaacaatt tctcaaaaag aaaagaaaat aaaggacagg 180 gcccctcccc cttcaaagaa agaagacatt cccacagttt ctacccctat ttcaattgaa 240 tctcaatcaa atttggatga acaaagaaca tcttacattc atcttttaca tcaaaaagat 300 tccattttag acgcaattat tgaagatgct gaaaacattc gaaacgtttt tattggtgaa 360 gtgcctttaa ccaaagaaat cattaaaaat cgactagatg acatttcgac agtgttaaat 420 aatgctagcg atttgattct caaattattc gaatctgata atgggatttt gaatgaatgt 480 gttattccga atgacgttat acaaaaagat atttattcca ttttgcatcc ctctgaaatt 540 tttgattata atggttttgg cattgatgaa gttaataact tagcgattag tccaaagatc 600 agatatttac ctaattggaa cattcagaaa attagaagta ctattgatct tttgaaaaac 660 gataattctc ctttgaaacc agtcaaattg gctcatgatt atggtttgat tagtaataac 720 ttaaaacgta aattattaat tggtgttgat agaatgttta ataaattaag tattcaacat 780 agatttggta cttttgaaag tcaaatattc agttgttttc ttatgaaaca attgctaaca 840 gaagaacagt gttacgtcaa tcttccaaat tgcgttttaa aatcaaaatt tcaaaaaaga 900 ggaattgaca ctgtatgctg gcaatatttg cgacaaatca tccttcatta caatggtttt 960 cctttttatc atcacactca tagtgcgaga tttggtgtgc ttgatagtac aaaaatttct 1020 attcataccg atttaccagt ttcctgtgta cttccaagtg ttttacatgg attgttaaac 1080 ggcatagttt cagaattatt atgtgacttg aactcagaga cagctttaat ttatgccaaa 1140 catttgatgt tttgctctca acaatcaact tatcaacgtc aactcgattt taaagatagt 1200 tttcgttctt ggcctaaatt gtgttatgat agtattggtt atgtgttagc tgtattatac 1260 tcttcagaca tgaaaccttt ggaacaaaga attgaacata ttgattcaga attttggatg 1320 gatgaaaaag agaaagaaat tttagaaacg agtgtttctc aattaccgga ttacgttaaa 1380 aaattcgttt cttcttctat tgcgcattgt actgaccttg gtaacattgt taaatcaaga 1440 atggctttaa ataacaacat ttctttatcc agagagctaa ctaatgatga agtaacttct 1500 gtacgtcttt tagcaagtaa aaatactgaa tttttaaggt ggttgaccat gaccagcact 1560 attatttcta attttgggat atataacaaa acttctctat tgctcgaata cgaaaaatca 1620 gttggaacaa aacaagacgt tatggtgtcg aaacctgagt gcaaaatcag cattgttaca 1680 gaacaaggta tgaatattcc attaattaat gattggtcta aagttcctat actaaatgag 1740 atgtctgaat tgtttgatca aaattggaag tctgatttga ttaaagaatt tgagcatatt 1800 gacgatttcg aaaaaagatt tgtgactttt ctaactaata aatcaggtgg acagaaaagt 1860 gaggaaccta cattgtcaaa agaattaaaa ggcatttcta acgctagagt gattgctttt 1920 gctcttaata ggaatgatta tcatgacgaa ctaaaattta taaaaatgtt aatggcttat 1980 ggtaaatgtg ctattcgatt tcaaattgat cgtcgtgcta gggtgattgt catcgtacca 2040 aatgcaattc aatcgagtga attattctta cttcttggtt ttaacgtttt aaaaactaac 2100 aaaaaacata atgacaagat cgctgttgga aaacaaattg gtaatttatt agacgcaaga 2160 gttcaaatgt gtaatactgg agatgtcagt tctgttaaaa attctggaga catgaagggc 2220 atggatgccc atactattcc taaccttaca ttatttttaa gaaataaaat gatcgaagtg 2280 ctttttgaat tagatcctag caaaagttgt tctaatttct tttttagtga agataaagaa 2340 tatactttaa aagagaagca tccaaaattt gaggaaattt ataaccgcaa cttaagagga 2400 gttgttatcc atgccgctaa atgcttattc tacatgttct ccatgaatat gtacttagaa 2460 gatcattttt ttgcagatag tcaaactgta tcagaccaaa cttttcaaac cggctttttt 2520 gcaacatcag ctcaacacac tttgttttta agtttgtttt tattaaattt ggaacgtaaa 2580 ttctttgcca agctagacaa taaaatgata tctgttatgc attctgtgat gggtgacgac 2640 gttttagagg ttatcaagaa tggagtgaaa tttcctgaca aggtaagaag ttggttgtct 2700 cttaggaaga atgatttagc taaattaaat tacgaggaag aattgtcgtt atctagaatg 2760 tatggagtct ttcttcagca agctgcttta ttgggagttt atgttcctta tccttcgaga 2820 atgtcattat tttgtgatga acgttctgat actactaaac gtcacactct ggatatgatt 2880 aaaattgtta tggatgtcat ttcagctaaa gctcaacgat catatggaat agataatggt 2940 ttgggaattg gctacagtat ttggagttgt catcgtagtt caagatatat ttattctgat 3000 ttcgataagt ctaaagtttc gcaattatta gagatggaca aaaccttcga ttttaatttc 3060 attgtatcgc acgatgaaac agaaaagtca atccgtttta tttatccttt cgttactgtc 3120 atgtgttctc ctatttcttg gcctatgtta acctttgtaa tgaatgatat ttctgaccct 3180 aataagttta taacatataa aagtaaagct tttacttctc ttaacggtga tggtgcttat 3240 atgctaatta atcaaatgtt ttttaccagc aacgaacaac acatgttcca atttgttgac 3300 tacgtcaaac atcagtcgaa aattgttgaa ctcaaattaa actcaaattt tttgaattgg 3360 gaagctagac atcattgggg ttttacattc ggagagcatt tactgcgttt taaacgtttg 3420 cgtcatctga cagagagcag aaaaaatgaa cttggattgg gagatatcga agttatggtt 3480 cataatttga ataaatattt agatggcaat cgggtgttgt taagttttaa tagtatttca 3540 gttctcaagg ctcataagat tgaagtgcct tacggattaa tgtacgcgaa tcataataga 3600 tcaaaaatcg atcaatcttt gactgttaga acagaatctc ttgaagaaag ggtatatttg 3660 gattcaatat ttttgaagca tatgctagat tataaaactg tgcctaaaga tttagaagta 3720 ctgaagactc atgctctctg ttccgttcgt ttaaggattt atggtgattt tgattatgct 3780 tgtgaaaaag atggtgttat cgaacctagt tctgacgctc agttcaatat cattttacct 3840 tttttacctg gttatcattt aaacagtgct tatggcaaat tatttttgta ttccactttg 3900 cccaccgtgc atgatagaga tatttccggt actttaggag aaataacagg atctttaggc 3960 gcttcttttg atgtagatgc tgcgatagaa tttggtgcac atgtgtttaa tattaatcca 4020 agtttggttg atgccgcagg cactgctatt gggattcctc aaggattatt gaatcattat 4080 aaaaatttgg ttaacgcttt tgttactaat aacttcaatt taaaatatca ttccatattt 4140 ttaaacgtaa aatattttgg tttaaatggc agtttaaaac atttttctac ttttggagac 4200 tattcaagtc gtcttgttcg ttttgactta atacataagt tggatagata tcataatgtt 4260 tttgtacgtg attttatttt tgcttatatt cacgaactta atgggcgcag agtgtatctc 4320 gattacagtt tgcatagtct gctgttagtc atgtctcgag gatctataaa gtattttaca 4380 tctcatctct ctcaattatt taatcctatg cttactctgg agttcgactg ataaggcgtt 4440 cccgattttg aaactatgaa gtgagcgtgg ttagtgtcca tggcgaaaac agcagacgtc 4500 //